VHP638
Library VH
(Link to library)
Clone ID VHP638
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15567-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHP638 (VHP638Q) /CSM/VH/VHP6-B/VHP638Q.Seq.d/
XXXXXXXXXXGAATTCAAGTGAATCACCAGTGTTGGTAGATCTTAGTTCCGATCATAGAT
TCAATGAAAAATGGACCTATGGTCAACCAGAAACCAATCGTGCAGCAATTAAAGAATCCA
AATTAATCGCCAATCCAGGTTGTTATGCAACTGGTATGTTTTTAACATTGAAGCCATTTG
TCAATGATTTAGTAACACCACCATCTTGTTTTGGTATTTCAGGTTATTCCGGTGCTGGTA
GTAAACCATNTGAAAAGAATGATCCAACACGTNTAAGTGATAATATNTTACCTTACAAAT
TGGTTCAACATACTCATGAACTTGAGGTTAGTCATCAATTGGGTAGTCCAATNTATTTCA
TGCCACATGTTGGTCAATTCTTTCAAGGTATTACCCTTACAATNTCAATGGAACTCAAAT
ATCCAATGACCAAAGAACAAGTGGTCGAACGTTATCAAAAATTCTATCAAAATGAACCGT
TAATTAAAATCGATAAAGATGGTATTCCAGAGGTTAAATCAAATAGTGGTAAACATT
sequence update 2002. 9.10
Translated Amino Acid sequence
---NSSESPVLVDLSSDHRFNEKWTYGQPETNRAAIKESKLIANPGCYATGMFLTLKPFV
NDLVTPPSCFGISGYSGAGSKPXEKNDPTRXSDNXLPYKLVQHTHELEVSHQLGSPXYFM
PHVGQFFQGITLTXSMELKYPMTKEQVVERYQKFYQNEPLIKIDKDGIPEVKSNSGKH


Translated Amino Acid sequence (All Frames)
Frame A:
---NSSESPVLVDLSSDHRFNEKWTYGQPETNRAAIKESKLIANPGCYATGMFLTLKPFV
NDLVTPPSCFGISGYSGAGSKPXEKNDPTRXSDNXLPYKLVQHTHELEVSHQLGSPXYFM
PHVGQFFQGITLTXSMELKYPMTKEQVVERYQKFYQNEPLIKIDKDGIPEVKSNSGKH


Frame B:
---iqvnhqcw*ilvpiidsmkngpmvnqkpivqqlknpn*spiqvvmqlvcf*h*shls
mi**hhhlvlvfqvipvlvvnhxkrmiqhv*viixyltnwfnilmnlrlvinwvvqxisc
hmlvnsfkvlplqxqwnsniq*pknkwsnviknsikmnr*lksikmvfqrlnqivvni


Frame C:
---fk*itsvgrs*frs*iq*kmdlwstrnqscsn*riqinrqsrllcnwyvfnieaicq
*fsnttilfwyfrlfrcw**tx*ke*sntxk**yxtlqigstys*t*g*ssig*snxfha
tcwsilsryypynxngtqisndqrtsgrtlskilsk*tvn*nr*rwysrg*ik*w*t


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP638 (VHP638Q) /CSM/VH/VHP6-B/VHP638Q.Seq.d/ 1015 0.0
VHK445 (VHK445Q) /CSM/VH/VHK4-B/VHK445Q.Seq.d/ 1013 0.0
VHJ741 (VHJ741Q) /CSM/VH/VHJ7-B/VHJ741Q.Seq.d/ 1013 0.0
VHJ479 (VHJ479Q) /CSM/VH/VHJ4-D/VHJ479Q.Seq.d/ 1013 0.0
VHI108 (VHI108Q) /CSM/VH/VHI1-A/VHI108Q.Seq.d/ 1013 0.0
VHC503 (VHC503Q) /CSM/VH/VHC5-A/VHC503Q.Seq.d/ 1013 0.0
SHK272 (SHK272Q) /CSM/SH/SHK2-C/SHK272Q.Seq.d/ 1013 0.0
CHM268 (CHM268Q) /CSM/CH/CHM2-C/CHM268Q.Seq.d/ 1013 0.0
AHN867 (AHN867Q) /CSM/AH/AHN8-C/AHN867Q.Seq.d/ 1013 0.0
AHE809 (AHE809Q) /CSM/AH/AHE8-A/AHE809Q.Seq.d/ 1013 0.0

own update 2003. 1. 7
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL425928|AL425928.1 clone BA0AB008G09 of library BA0AB from strain CLIB 210 of Kluyveromyces lactis. 54 0.002 1
AC138190|AC138190.1 Mus musculus clone RP23-224G5, LOW-PASS SEQUENCE SAMPLING. 36 0.44 4
AC120816|AC120816.4 Rattus norvegicus clone CH230-347G6, WORKING DRAFT SEQUENCE, 4 unordered pieces. 38 0.72 7
AC108850|AC108850.2 Mus musculus clone RP24-85N11, WORKING DRAFT SEQUENCE, 7 unordered pieces. 44 1.8 1
AC107834|AC107834.5 Mus musculus clone RP23-251L12, WORKING DRAFT SEQUENCE, 10 unordered pieces. 44 1.8 1
AC100895|AC100895.2 Mus musculus clone RP23-69G5, LOW-PASS SEQUENCE SAMPLING. 44 1.8 1
AC100561|AC100561.6 Mus musculus chromosome 1 clone RP23-154C4 map 1, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces. 44 1.8 1
AC125310|AC125310.2 Mus musculus chromosome UNK clone RP24-548E5, WORKING DRAFT SEQUENCE, 10 unordered pieces. 44 1.8 1
AC107800|AC107800.4 Mus musculus clone RP23-28K16, WORKING DRAFT SEQUENCE, 14 unordered pieces. 44 1.8 1
BZ235549|BZ235549.1 CH230-251O21.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-251O21, DNA sequence. 40 2.5 2
dna update 2003.10.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE013598_2615(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 184 9e-46
CP000967_1954(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 182 6e-45
(Q2P2F6) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta... 182 6e-45
(Q3BSI7) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta... 181 8e-45
(B0RS54) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta... 174 1e-42
(B2FMD7) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta... 173 3e-42
CP001111_2719(CP001111|pid:none) Stenotrophomonas maltophilia R5... 172 6e-42
(Q4UVI5) RecName: Full=N-acetyl-gamma-glutamyl-phosphate reducta... 171 8e-42
CP000941_285(CP000941|pid:none) Xylella fastidiosa M12, complete... 164 2e-39
CU928175_343(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 162 4e-39
protein update 2009. 7.21
PSORT

psg: 0.75 gvh: 0.36 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
20.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for VHP638 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHP638Z
3' end seq.
>VHP638Z.Seq
NNNNNNNNNNGAATTCAAGTGAATCACCAGTGTTGGTAGATCTTAGTTCCGATCATAGAT
TCAATGAAAAATGGACCTATGGTCAACCAGAAACCAATCGTGCAGCAATTAAAGAATCCA
AATTAATCGCCAATCCAGGTTGTTATGCAACTGGTATGTTTTTAACATTGAAGCCATTTG
TCAATGATTTAGTAACACCACCATCTTGTTTTGGTATTTCAGGTTATTCCGGTGCTGGTA
GTAAACCATNTGAAAAGAATGATCCAACACGTNTAAGTGATAATATNTTACCTTACAAAT
TGGTTCAACATACTCATGAACTTGAGGTTAGTCATCAATTGGGTAGTCCAATNTATTTCA
TGCCACATGTTGGTCAATTCTTTCAAGGTATTACCCTTACAATNTCAATGGAACTCAAAT
ATCCAATGACCAAAGAACAAGTGGTCGAACGTTATCAAAAATTCTATCAAAATGAACCGT
TAATTAAAATCGATAAAGATGGTATTCCAGAGGTTAAATCAAATAGTGGTAAACATT
Length of 3' end seq. 537
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -