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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP637
Library VH
(Link to library)
Clone ID VHP637
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16441-1
Original site URL
Representative seq. ID VHP637P
(Link to Original site)
Representative DNA sequence 
>VHP637 (VHP637Q) /CSM/VH/VHP6-B/VHP637Q.Seq.d/
ATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAG
ATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAAT
ACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACA
AATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCA
ACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTAT
GGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTAT
GGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTT
TTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCA
CGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCA
TCCAATGGGTGATGTTTTATTCACACCAGGTGGTTCAAGCTTTCCAACCGACCCATTATG
GGATCCATCAGAGAAATCTGCAGTGTTTTTCGCAATTTTAGCATCAAAAACAXXXXXXXX
XXGCGATGATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAGGTGAAAAAACAAC
TTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCCAACAAGCACAAATTTCAAA
TAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTACGAAAGTGCAGA
CGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGGATCTTCAGAACA
ATTGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAATCACTGAAGAAAATTGTAC
ACCAGGTCAAACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGCCACACAATGTGT
AGGTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATGTGTCCATCAAAAAATTCTTC
AAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGCTTTAGCTGGTCT
TGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCAGATTTCAAACAAAAATTATTAAAAAT
GGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAAACCAAACTCATT
AGCTGATGATGAATTTGGTATTGAAGATGATGATGCTCAAATTTTAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
yyfsslsvyinkleeiik*rfhlfylfl*rllla*hfhkilfqlisktaligsnfnhyiq
ikmimy*l*iqdqrmf*kdqqmvvlighqmylinkeilfmvmqdiikemiilwl*ishlm
ekpkfqyqmmqvkhfqpqqffhiklyqfhhi*ilrv**lhvpiisf*lvkilv*HGTMHH
PMGDVLFTPGGSSFPTDPLWDPSEKSAVFFAILASKT---

---DDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQAQISNKYCECTVEDFECDIGYES
ADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITEENCTPGQTYIKSKGFRRVAATQ
CVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILALAGLGGFGFYVFKNPDFKQKLL
KMVGFSKVGPKYSVIGIKPNSLADDEFGIEDDDAQILN
Translated Amino Acid sequence (All Frames) 
Frame A:
ilfffticlykqiggnykmkissilfifiaiivglalsqntiptykqnsinwkqfqplyt
nkddyvlivdtrsknvlkrstnggidwssnvldkqgniiygnagyyqrddnimvvnfpsy
gktqisvsndagqtfstsavfphkvvsvsphldieglviarsdnfilisedfgltwnnas
sng*cfihtrwfklsnrpimgsireicsvfrnfsikn---

---amipqcnliplvvf*vkkqliellnqipivi*pnkhkfqinivnvqskilnvilvtk
vqtiavpimmvlplvfhldlqnn*ivvnqllhnmfqslkkivhqvkpisnqkvseeslph
nv*vvlmqlihqrlscvhqkilqvvakvgslvllllfll*lvlvvlvstflriqisnkny
*kwlvfqrsvqnivlsvlnqth*lmmnlvlkmmmlkf*

Frame B:
yyfsslsvyinkleeiik*rfhlfylfl*rllla*hfhkilfqlisktaligsnfnhyiq
ikmimy*l*iqdqrmf*kdqqmvvlighqmylinkeilfmvmqdiikemiilwl*ishlm
ekpkfqyqmmqvkhfqpqqffhiklyqfhhi*ilrv**lhvpiisf*lvkilv*HGTMHH
PMGDVLFTPGGSSFPTDPLWDPSEKSAVFFAILASKT---

---r*flnailyhslyfr*knnl*nc*tkyqllydptstnfk*il*mysrrf*m*ywlrk
crr*qfr**wfylwysiwifrtiels*incfticsnh*rklytrsnlyqikrfqksrcht
mcrwc*cnlftrdchvsikkffkwwqrldrwccycyscfswswwfwflrf*esrfqtkii
kngwffkgrski*cyry*tklis***iwy*r**csnfk

Frame C:
iiflhylfi*tnwrkl*nedfiyfiyfysdycwlstftkyysnl*akqh*leaistiiyk
*r*lcincrykikecfkkinkwwy*lvikct**trkyylw*crilskr**yygckfpilw
knpnfsik*crsnifnlssfst*scisfttfry*gfsdctfr*fhfn**rfwfnmeqcii
qwvmfyshqvvqafqpthygihqrnlqcfsqf*hqk---

---DDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQQAQISNKYCECTVEDFECDIGYES
ADDSSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPITEENCTPGQTYIKSKGFRRVAATQ
CVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILALAGLGGFGFYVFKNPDFKQKLL
KMVGFSKVGPKYSVIGIKPNSLADDEFGIEDDDAQILN
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP637 (VHP637Q) /CSM/VH/VHP6-B/VHP637Q.Seq.d/                       2535   0.0
VHK602 (VHK602Q) /CSM/VH/VHK6-A/VHK602Q.Seq.d/                       1292   0.0
VHQ426 (VHQ426Q) /CSM/VH/VHQ4-B/VHQ426Q.Seq.d/                       1283   0.0
VHI424 (VHI424Q) /CSM/VH/VHI4-A/VHI424Q.Seq.d/                       1283   0.0
VHI416 (VHI416Q) /CSM/VH/VHI4-A/VHI416Q.Seq.d/                       1283   0.0
VHI195 (VHI195Q) /CSM/VH/VHI1-D/VHI195Q.Seq.d/                       1283   0.0
VHH854 (VHH854Q) /CSM/VH/VHH8-C/VHH854Q.Seq.d/                       1283   0.0
VHH536 (VHH536Q) /CSM/VH/VHH5-B/VHH536Q.Seq.d/                       1283   0.0
VHB724 (VHB724Q) /CSM/VH/VHB7-A/VHB724Q.Seq.d/                       1283   0.0
VHA273 (VHA273Q) /CSM/VH/VHA2-D/VHA273Q.Seq.d/                       1283   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ427416) Dictyostelium discoideum cDNA clone:ddv62i10, 5' ...  1292   0.0    1
(BJ424303) Dictyostelium discoideum cDNA clone:ddv52c02, 5' ...  1292   0.0    1
(BJ446610) Dictyostelium discoideum cDNA clone:ddv63d08, 3' ...  1281   0.0    1
(BJ446319) Dictyostelium discoideum cDNA clone:ddv62i10, 3' ...  1281   0.0    1
(BJ441803) Dictyostelium discoideum cDNA clone:ddv47m23, 3' ...  1281   0.0    1
(BJ441599) Dictyostelium discoideum cDNA clone:ddv47p06, 3' ...  1281   0.0    1
(BJ441597) Dictyostelium discoideum cDNA clone:ddv47p04, 3' ...  1281   0.0    1
(BJ441421) Dictyostelium discoideum cDNA clone:ddv46l14, 3' ...  1281   0.0    1
(BJ441312) Dictyostelium discoideum cDNA clone:ddv46g09, 3' ...  1281   0.0    1
(BJ437424) Dictyostelium discoideum cDNA clone:ddv34p05, 3' ...  1281   0.0    1
dna update 2008.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159157_1(AF159157|pid:none) Hydra vulgaris head-activator bind...    75   7e-12
AB093294_1(AB093294|pid:none) Mus musculus mRNA for mKIAA1329 pr...    65   4e-09
(Q9EPR5) RecName: Full=VPS10 domain-containing receptor SorCS2; ...    65   4e-09
(Q9UPU3) RecName: Full=VPS10 domain-containing receptor SorCS3; ...    64   1e-08
BC156053_1(BC156053|pid:none) Synthetic construct Homo sapiens c...    64   2e-08
AB037750_1(AB037750|pid:none) Homo sapiens mRNA for KIAA1329 pro...    63   3e-08
AF284755_1(AF284755|pid:none) Mus musculus VPS10 domain receptor...    62   3e-08
(Q9JLC4) RecName: Full=VPS10 domain-containing receptor SorCS1; ...    62   3e-08
(Q95209) RecName: Full=Sortilin-related receptor; AltName: Full=...    62   6e-08
AY099453_1(AY099453|pid:none) Homo sapiens VPS10 domain receptor...    60   2e-07
protein update 2009. 7.21
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.22  top: 0.67  tms: 0.07  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.07  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VHP637 is nuc
5' end seq. ID VHP637F
5' end seq. 
>VHP637F.Seq
ATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAG
ATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAAT
ACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACA
AATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCA
ACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTAT
GGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTAT
GGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTT
TTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCA
CGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCA
TCCAATGGGTGATGTTTTATTCACACCAGGTGGTTCAAGCTTTCCAACCGACCCATTATG
GGATCCATCAGAGAAATCTGCAGTGTTTTTCGCAATTTTAGCATCAAAAACANNNNNNNN
NN
Length of 5' end seq. 662
3' end seq. ID VHP637Z
3' end seq. 
>VHP637Z.Seq
NNNNNNNNNNGCGATGATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAGGTGAA
AAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCCAACAAGCACAA
ATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTACGAA
AGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGGATCT
TCAGAACAATTGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAATCACTGAAGAA
AATTGTACACCAGGTCAAACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGCCACA
CAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATGTGTCCATCAAAA
AATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGCTTTA
GCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCAGATTTCAAACAAAAATTA
TTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAAACCA
AACTCATTAGCTGATGATGAATTTGGTATTGAAGATGATGATGCTCAAATTTTAAAT
Length of 3' end seq. 657
Connected seq. ID VHP637P
Connected seq. 
>VHP637P.Seq
ATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAATGAAG
ATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACAAAAT
ACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATATACA
AATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAGATCA
ACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTATTTAT
GGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATCTTAT
GGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGCAGTT
TTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGATTGCA
CGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGCATCA
TCCAATGGGTGATGTTTTATTCACACCAGGTGGTTCAAGCTTTCCAACCGACCCATTATG
GGATCCATCAGAGAAATCTGCAGTGTTTTTCGCAATTTTAGCATCAAAAACA--------
--GCGATGATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAGGTGAAAAAACAAC
TTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCCAACAAGCACAAATTTCAAA
TAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTACGAAAGTGCAGA
CGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGGATCTTCAGAACA
ATTGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAATCACTGAAGAAAATTGTAC
ACCAGGTCAAACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGCCACACAATGTGT
AGGTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATGTGTCCATCAAAAAATTCTTC
AAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGCTTTAGCTGGTCT
TGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCAGATTTCAAACAAAAATTATTAAAAAT
GGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAAACCAAACTCATT
AGCTGATGATGAATTTGGTATTGAAGATGATGATGCTCAAATTTTAAAT
Length of connected seq. 1299
Full length Seq ID -
Full length Seq. -
Length of full length seq. -