VHP636
Library VH
(Link to library)
Clone ID VHP636
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16303-1
Original site URL
Representative seq. ID VHP636P
(Link to Original site)
Representative DNA sequence
>VHP636 (VHP636Q) /CSM/VH/VHP6-B/VHP636Q.Seq.d/
ATCAAAAAAAAAANCTCAAAAAATAATAGAGTATACCCAATTTATTATTATTTGATCATT
GTAATTATATTATAAATTTATACTCATTTATNGGTTTGATTGNGTNCATATAAAAAGTTA
TTAAATAAATAAATAATAATAATAATAATAATANCAATATTAATAATAATAATAAAATAT
ATTTTAAAAAAAAAATAAAANTAAAATAAAAATNTTNGTCCNTAATAAAATCTNCNACAA
TAATAATAGTTAAAATAATAAAANGTCANATCAAATANCAGTTGATGAGTTATGGNCAAA
ANGNGANCAANCTTTCNAANATCTTTTCCTCAATTTGAAAAANGGTTTATCAANAAANCG
TTNTNTGGANATTTATNCCAAAATATNCAATTATXXXXXXXXXXCATGGACACTTACAAA
TAAACAAACAGCAACTCCATTCAAACCACCAAGTGAAATGTTATCAAGTATTACATATTT
CGAATCTTTCTACAAAAAAAGTTACCAAGGTAGAGTTTTAACTTTCCTTTACGATTTTTC
AAGAGCTGATGTTGACTCAAGACAAGCCAAAGGAAAAATATATAAACTTACAACTACAGC
ATACCAAATGGCAATTTTATTAATGTTTAATGGAGCAGATAAGATTACTAGATTCCTTAT
TAATGATACAATTGGTTTAGATGAAACATCAATTCGTCTTCCATTATTAGCTTTAATCAA
AACAGGTATTATTGAGTGTTCAGAACCAAGCTTCAAGAATTGGAACAACGATACTGAATT
CACTGTAAATTCTAAATTCAGTTCAAAGAAGATGAAGGTCAGCTGTAATATTGCTGTTCA
AATTGGTGAAACTAAACAATCAGAAGGTCAACAAACTGTCAGCGAACAAGAAATTGAAAA
AGAACGTTTCTTCAAACTTCAAGCTGCCATTGTACGTATTATGAAATCTAAAAAGACAAT
GACTCACAATGATCTCACTGTGGAAACTACCACTCAAGTCAGCAAATGGTTCACACCAAA
GATCACTGCCATTAAAAAGGCGATCGAATACCTCATCGACCAAGAATACATTAGAAGAAC
TAC
sequence update 2002.10.25
Translated Amino Acid sequence
skkkxqkiieytqfiii*sl*lyykfiliyxfdxvhiksy*ink******xqy*****ni
f*kknkxkikxxvxnkixxnnns*NNKXSXQIXVDELWXKXXQXFXXLFLNLKXGLSXXR
XXXIYXKIXNY---

---WTLTNKQTATPFKPPSEMLSSITYFESFYKKSYQGRVLTFLYDFSRADVDSRQAKGK
IYKLTTTAYQMAILLMFNGADKITRFLINDTIGLDETSIRLPLLALIKTGIIECSEPSFK
NWNNDTEFTVNSKFSSKKMKVSCNIAVQIGETKQSEGQQTVSEQEIEKERFFKLQAAIVR
IMKSKKTMTHNDLTVETTTQVSKWFTPKITAIKKAIEYLIDQEYIRRT


Translated Amino Acid sequence (All Frames)
Frame A:
ikkkxsknnrvypiyyyliiviil*iythlxv*lxxykkllnk*iiiiiiixiliiiiky
ilkkk*x*nknxxp**nlxq***lk**xvxsnxs**vmxkxxxxfxxsfpqfekxfixkx
xxgxlxqnxql---

---hghlqinkqqlhsnhqvkcyqvlhisnlstkkvtkvef*lsftifqelmltqdkpke
kyinlqlqhtkwqfy*clmeqirlldsllmiqlv*mkhqfvfhy*l*skqvllsvqnqas
rigttilnsl*ilnsvqrr*rsavillfklvklnnqkvnklsankklkknvssnfklply
vl*nlkrq*ltmislwklplksangshqrslplkrrsntsstkntleel

Frame B:
skkkxqkiieytqfiii*sl*lyykfiliyxfdxvhiksy*ink******xqy*****ni
f*kknkxkikxxvxnkixxnnns*NNKXSXQIXVDELWXKXXQXFXXLFLNLKXGLSXXR
XXXIYXKIXNY---

---mdtyk*tnsnsiqttk*nvikyyifriflqkklpr*sfnfplrffks*c*lktsqrk
ni*tynysipngnfinv*wsr*dy*ipy**ynwfr*ninsssiisfnqnryy*vfrtklq
eleqry*ihckf*iqfkedegql*yccsnw*n*tirrstncqrtrn*krtflqtsschct
yyei*kdndsq*shcgnyhssqqmvhtkdhch*kgdriphrprih*kny

Frame C:
qkkxlkk**sipnlllfdhcnyiinlysfxglixxi*kvik*innnnnnnxninnnnkiy
fkkkikxk*kxxsxiksxtiiivkiikxxikxqlmsygqxxxxlsxifssi*kxvyqxxv
xwxfxpkyxi---

---WTLTNKQTATPFKPPSEMLSSITYFESFYKKSYQGRVLTFLYDFSRADVDSRQAKGK
IYKLTTTAYQMAILLMFNGADKITRFLINDTIGLDETSIRLPLLALIKTGIIECSEPSFK
NWNNDTEFTVNSKFSSKKMKVSCNIAVQIGETKQSEGQQTVSEQEIEKERFFKLQAAIVR
IMKSKKTMTHNDLTVETTTQVSKWFTPKITAIKKAIEYLIDQEYIRRT

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP636 (VHP636Q) /CSM/VH/VHP6-B/VHP636Q.Seq.d/ 1421 0.0
VHP488 (VHP488Q) /CSM/VH/VHP4-D/VHP488Q.Seq.d/ 1304 0.0
VHK869 (VHK869Q) /CSM/VH/VHK8-C/VHK869Q.Seq.d/ 1304 0.0
VHC569 (VHC569Q) /CSM/VH/VHC5-C/VHC569Q.Seq.d/ 1304 0.0
CFK127 (CFK127Q) /CSM/CF/CFK1-B/CFK127Q.Seq.d/ 1304 0.0
AHO435 (AHO435Q) /CSM/AH/AHO4-B/AHO435Q.Seq.d/ 1304 0.0
AHE458 (AHE458Q) /CSM/AH/AHE4-C/AHE458Q.Seq.d/ 1304 0.0
AHE133 (AHE133Q) /CSM/AH/AHE1-B/AHE133Q.Seq.d/ 1302 0.0
VHK368 (VHK368Q) /CSM/VH/VHK3-C/VHK368Q.Seq.d/ 1300 0.0
VHP693 (VHP693Q) /CSM/VH/VHP6-D/VHP693Q.Seq.d/ 1298 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446482) Dictyostelium discoideum cDNA clone:ddv62i24, 3' ... 1156 0.0 2
(BJ446309) Dictyostelium discoideum cDNA clone:ddv62g10, 3' ... 1156 0.0 2
(BJ446195) Dictyostelium discoideum cDNA clone:ddv61p22, 3' ... 1156 0.0 2
(BJ443341) Dictyostelium discoideum cDNA clone:ddv52j18, 3' ... 1156 0.0 2
(BJ438177) Dictyostelium discoideum cDNA clone:ddv36i17, 3' ... 1156 0.0 2
(BJ381701) Dictyostelium discoideum cDNA clone:ddc42j12, 3' ... 1156 0.0 1
(BJ376127) Dictyostelium discoideum cDNA clone:ddc21e07, 3' ... 1156 0.0 2
(BJ356119) Dictyostelium discoideum cDNA clone:dda59f10, 3' ... 1156 0.0 2
(BJ350344) Dictyostelium discoideum cDNA clone:dda39d16, 3' ... 1156 0.0 2
(BJ350246) Dictyostelium discoideum cDNA clone:dda39a09, 3' ... 1156 0.0 2
dna update 2008.12.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CU633897_277(CU633897|pid:none) Podospora anserina genomic DNA c... 132 3e-29
AE017356_115(AE017356|pid:none) Cryptococcus neoformans var. neo... 127 7e-28
FB802359_1(FB802359|pid:none) Sequence 21632 from Patent WO20080... 127 9e-28
AK072402_1(AK072402|pid:none) Oryza sativa Japonica Group cDNA c... 126 1e-27
AL606454_2(AL606454|pid:none) Oryza sativa genomic DNA, chromoso... 126 1e-27
FB802423_1(FB802423|pid:none) Sequence 21696 from Patent WO20080... 124 6e-27
BT069454_1(BT069454|pid:none) Zea mays full-length cDNA clone ZM... 123 1e-26
FB802477_1(FB802477|pid:none) Sequence 21750 from Patent WO20080... 123 1e-26
U83410_1(U83410|pid:none) Human CUL-2 (cul-2) mRNA, complete cds. 122 2e-26
AC146568_18(AC146568|pid:none) Medicago truncatula clone mth2-10... 122 2e-26
protein update 2009. 7.21
PSORT

psg: 0.58 gvh: 0.57 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
20.0 %: mitochondrial
20.0 %: nuclear
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHP636 is cyt

5' end seq. ID VHP636F
5' end seq.
>VHP636F.Seq
ATCAAAAAAAAAANCTCAAAAAATAATAGAGTATACCCAATTTATTATTATTTGATCATT
GTAATTATATTATAAATTTATACTCATTTATNGGTTTGATTGNGTNCATATAAAAAGTTA
TTAAATAAATAAATAATAATAATAATAATAATANCAATATTAATAATAATAATAAAATAT
ATTTTAAAAAAAAAATAAAANTAAAATAAAAATNTTNGTCCNTAATAAAATCTNCNACAA
TAATAATAGTTAAAATAATAAAANGTCANATCAAATANCAGTTGATGAGTTATGGNCAAA
ANGNGANCAANCTTTCNAANATCTTTTCCTCAATTTGAAAAANGGTTTATCAANAAANCG
TTNTNTGGANATTTATNCCAAAATATNCAATTATNNNNNNNNNN
Length of 5' end seq. 404
3' end seq. ID VHP636Z
3' end seq.
>VHP636Z.Seq
NNNNNNNNNNCATGGACACTTACAAATAAACAAACAGCAACTCCATTCAAACCACCAAGT
GAAATGTTATCAAGTATTACATATTTCGAATCTTTCTACAAAAAAAGTTACCAAGGTAGA
GTTTTAACTTTCCTTTACGATTTTTCAAGAGCTGATGTTGACTCAAGACAAGCCAAAGGA
AAAATATATAAACTTACAACTACAGCATACCAAATGGCAATTTTATTAATGTTTAATGGA
GCAGATAAGATTACTAGATTCCTTATTAATGATACAATTGGTTTAGATGAAACATCAATT
CGTCTTCCATTATTAGCTTTAATCAAAACAGGTATTATTGAGTGTTCAGAACCAAGCTTC
AAGAATTGGAACAACGATACTGAATTCACTGTAAATTCTAAATTCAGTTCAAAGAAGATG
AAGGTCAGCTGTAATATTGCTGTTCAAATTGGTGAAACTAAACAATCAGAAGGTCAACAA
ACTGTCAGCGAACAAGAAATTGAAAAAGAACGTTTCTTCAAACTTCAAGCTGCCATTGTA
CGTATTATGAAATCTAAAAAGACAATGACTCACAATGATCTCACTGTGGAAACTACCACT
CAAGTCAGCAAATGGTTCACACCAAAGATCACTGCCATTAAAAAGGCGATCGAATACCTC
ATCGACCAAGAATACATTAGAAGAACTAC
Length of 3' end seq. 689
Connected seq. ID VHP636P
Connected seq.
>VHP636P.Seq
ATCAAAAAAAAAANCTCAAAAAATAATAGAGTATACCCAATTTATTATTATTTGATCATT
GTAATTATATTATAAATTTATACTCATTTATNGGTTTGATTGNGTNCATATAAAAAGTTA
TTAAATAAATAAATAATAATAATAATAATAATANCAATATTAATAATAATAATAAAATAT
ATTTTAAAAAAAAAATAAAANTAAAATAAAAATNTTNGTCCNTAATAAAATCTNCNACAA
TAATAATAGTTAAAATAATAAAANGTCANATCAAATANCAGTTGATGAGTTATGGNCAAA
ANGNGANCAANCTTTCNAANATCTTTTCCTCAATTTGAAAAANGGTTTATCAANAAANCG
TTNTNTGGANATTTATNCCAAAATATNCAATTAT----------CATGGACACTTACAAA
TAAACAAACAGCAACTCCATTCAAACCACCAAGTGAAATGTTATCAAGTATTACATATTT
CGAATCTTTCTACAAAAAAAGTTACCAAGGTAGAGTTTTAACTTTCCTTTACGATTTTTC
AAGAGCTGATGTTGACTCAAGACAAGCCAAAGGAAAAATATATAAACTTACAACTACAGC
ATACCAAATGGCAATTTTATTAATGTTTAATGGAGCAGATAAGATTACTAGATTCCTTAT
TAATGATACAATTGGTTTAGATGAAACATCAATTCGTCTTCCATTATTAGCTTTAATCAA
AACAGGTATTATTGAGTGTTCAGAACCAAGCTTCAAGAATTGGAACAACGATACTGAATT
CACTGTAAATTCTAAATTCAGTTCAAAGAAGATGAAGGTCAGCTGTAATATTGCTGTTCA
AATTGGTGAAACTAAACAATCAGAAGGTCAACAAACTGTCAGCGAACAAGAAATTGAAAA
AGAACGTTTCTTCAAACTTCAAGCTGCCATTGTACGTATTATGAAATCTAAAAAGACAAT
GACTCACAATGATCTCACTGTGGAAACTACCACTCAAGTCAGCAAATGGTTCACACCAAA
GATCACTGCCATTAAAAAGGCGATCGAATACCTCATCGACCAAGAATACATTAGAAGAAC
TAC
Length of connected seq. 1073
Full length Seq ID -
Full length Seq. -
Length of full length seq. -