>VHP635 (VHP635Q) /CSM/VH/VHP6-B/VHP635Q.Seq.d/
XXXXXXXXXXCTAAAGATCGTGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTC
GAAGTATTCACTATGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTC
TTTGCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACC
GATAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATT
TTCGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTT
GCTTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTAT
CCACGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTG
TGGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCAATGGA
TTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAGA
TGCACTCCGTAAAATCTATGGTTGGTTTGGTAAAGAAATCCCAAAGGAAGCAACTCAAGT
CTCTCATAAAGTTGCTGAACAACAAGCTAAAAGAGATGCTTTACATGCACAAGAAACCCA

---KDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFAIIHDGTWFHDAINLRILTD
NELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYP
RFLFR*srlsstwykfprlwlglgclcldlvfplvhsngfh*irchlyspw*d*tnq*rc
tp*nlwlvw*rnpkgsnssls*sc*tts*krcftctrnp

Frame A:
---*rscks*k*trsmesfrsihygtllwflfsrfnhcilcnhs*wylvp*cyqssylnr
**tswshlssslylwscnyfrit*srflll*tsr*scnlcfryvsnccylywclwfpwls
tipfpiiqiiqymvqiskvvvgvglfvlgfgvsfgtfqwisln*vspifsvvrlnqsikm
hsvksmvglvkksqrkqlkslikllnnklkemlymhkkp


Frame B:
---KDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFAIIHDGTWFHDAINLRILTD
NELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYP
RFLFR*srlsstwykfprlwlglgclcldlvfplvhsngfh*irchlyspw*d*tnq*rc
tp*nlwlvw*rnpkgsnssls*sc*tts*krcftctrnp


Frame C:
---kiv*elemnqingifskyslwhfvmvsi**vqplyslqsfmmvlgsmmlsifvs*pi
mnfvvssifkslslvlqlfsyhvvkvsltlnvqvil*sllslclklllpllvsmvsvvih
dsfsdnpdypvhgtnfqgcgwgwavcawiwcflwyipmdfiklgvtyilrgkiepinkda
lrkiygwfgkeipkeatqvshkvaeqqakrdalhaqet

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP635 (VHP635Q) /CSM/VH/VHP6-B/VHP635Q.Seq.d/                       1289   0.0
VHP712 (VHP712Q) /CSM/VH/VHP7-A/VHP712Q.Seq.d/                       1271   0.0
VHN640 (VHN640Q) /CSM/VH/VHN6-B/VHN640Q.Seq.d/                       1271   0.0
VHN420 (VHN420Q) /CSM/VH/VHN4-A/VHN420Q.Seq.d/                       1271   0.0
VHJ167 (VHJ167Q) /CSM/VH/VHJ1-C/VHJ167Q.Seq.d/                       1271   0.0
VHD413 (VHD413Q) /CSM/VH/VHD4-A/VHD413Q.Seq.d/                       1271   0.0
VHC544 (VHC544Q) /CSM/VH/VHC5-B/VHC544Q.Seq.d/                       1271   0.0
VHB587 (VHB587Q) /CSM/VH/VHB5-D/VHB587Q.Seq.d/                       1271   0.0
VHA802 (VHA802Q) /CSM/VH/VHA8-A/VHA802Q.Seq.d/                       1271   0.0
VHA582 (VHA582Q) /CSM/VH/VHA5-D/VHA582Q.Seq.d/                       1271   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X98286|X98286.1 D.discoideum mRNA for P-type ATPase.              702   0.0    2
CB980117|CB980117.1 CAB70001_IaR_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaR_H03 3', mRNA sequence.    44   2.2    1
BZ885667|BZ885667.1 CH240_269M12.TJ CHORI-240 Bos taurus genomic clone CH240_269M12, DNA sequence.    44   2.2    1
CA508248|CA508248.1 UI-R-FS0-cqn-c-13-0-UI.s1 UI-R-FS0 Rattus norvegicus cDNA clone UI-R-FS0-cqn-c-13-0-UI 3', mRNA sequence.    44   2.2    1
AC094849|AC094849.4 Rattus norvegicus clone CH230-6A10, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44   2.2    1
AL136440|AL136440.2 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-185I24.    44   2.2    1
CB980047|CB980047.1 CAB70001_IaF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaF_H03 5', mRNA sequence.    44   2.2    1
CB979848|CB979848.1 CAB70001_IIcF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IIcF_H03 5', mRNA sequence.    44   2.2    1
BG168127|BG168127.1 602341508F1 NIH_MGC_89 Homo sapiens cDNA clone IMAGE:4449625 5', mRNA sequence.    44   2.2    1
AC121675|AC121675.4 Rattus norvegicus clone CH230-59I6, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44   2.2    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T30580(T30580) P-type ATPase - slime mold (Dictyostelium discoid...   241   e-122
(P54679) RecName: Full=Probable plasma membrane ATPase;         ...   241   e-122
D88424_1(D88424|pid:none) Cyanidium caldarium mRNA for plasma me...    94   6e-30
DQ103594_5(DQ103594|pid:none) Capsella rubella clone BAC 8F1, co...   101   7e-29
(Q03194) RecName: Full=Plasma membrane ATPase 4;          EC=3.6...    98   9e-29
DQ103595_5(DQ103595|pid:none) Arabidopsis arenosa clone BAC 28N1...   100   2e-28
AB022442_1(AB022442|pid:none) Vicia faba VHA2 mRNA for p-type H+...    99   2e-28
AM487422_1(AM487422|pid:none) Vitis vinifera contig VV78X258876....    97   3e-28
AC155282_39(AC155282|pid:none) Medicago truncatula chromosome 2 ...   100   3e-28
AB177650_1(AB177650|pid:none) Daucus carota DcPA 4 mRNA for plas...    96   3e-28

 psg: 0.73  gvh: 0.51  alm: 0.25  top: 0.53  tms: 0.20  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear
	  4.0 %: peroxisomal
	  4.0 %: cytoplasmic

>> prediction for VHP635 is end

>VHP635Z.Seq
NNNNNNNNNNCTAAAGATCGTGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTC
GAAGTATTCACTATGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTC
TTTGCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACC
GATAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATT
TTCGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTT
GCTTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTAT
CCACGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTG
TGGTTGGGGTTGGGCTGTTTGTGCTTGGATTTGGTGTTTCCTTTGGTACATTCCAATGGA
TTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAATCAATAAAGA
TGCACTCCGTAAAATCTATGGTTGGTTTGGTAAAGAAATCCCAAAGGAAGCAACTCAAGT
CTCTCATAAAGTTGCTGAACAACAAGCTAAAAGAGATGCTTTACATGCACAAGAAACCCA