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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP634
Library VH
(Link to library)
Clone ID VHP634
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16379-1
Original site URL
Representative seq. ID VHP634P
(Link to Original site)
Representative DNA sequence 
>VHP634 (VHP634Q) /CSM/VH/VHP6-B/VHP634Q.Seq.d/
ATTATTTTTATAATTTCACTTGTTTATTTTAATTTTATACATATAAATAATAATATAGTT
GAAAAAATGTGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGAT
AATATCGTACCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTC
AGCGGCAAAGTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCAT
TCAATTGACATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACC
TACTATGAACCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAA
AATACAATTCTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTAT
CGTTCAAAATATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCC
ACTGATGCTCGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAAT
ATTAAAATCACTATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGTA
ATTGAAAATAATGATGGTACTAAAACCTTTATTTTTGAACAAACTCCAAAGATGAGTACT
TATATTXXXXXXXXXXGAGATAAAGTAAACACTAAATTGGGTATGTTGGGTGATGCTGAT
ATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTTCAAGTTTACCA
TCAGATATTCGTTNTACAGTACTTGCTACAATCGTAAAGAATGGTGGTGAAGCTGATCAA
CAAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGAATTCTTACCTT
TTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCAATTTCGCTTTA
TCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCCCAAATCGTATT
CGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAACGAAACATTTAAA
AACTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAATGGATGATTCT
CAATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTGCTGATCGTTCA
ATTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAGCTTTTAATCAA
GATTTATCAAATTGGATTCAATCAAAATAAAAATAAAATCTCTTACAATGAAAGATCTTT
GTTTTAATAATTGATAGNATAAAAAAAAATAGACGAAAACTAAAATAAACATCAAATTAT
sequence update 2002.10.25
Translated Amino Acid sequence 
IIFIISLVYFNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKDFVF
SGKVDITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELPVTE
NTILSIDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKSFFN
IKITISSHLTALSNMDTTSVIENNDGTKTFIFEQTPKMSTYI---

---DKVNTKLGMLGDADIVAECKKRFEAFKADSSSLPSDIRXTVLATIVKNGGEADQQII
IDQYLKSSLVAEKNSYLLVLALAPKEELVEKALNFALSPSVRSQDSYMVFFTLPNRIRQF
AWAYLTKNFNQINETFKNSPLFGRIIGSCLTSKMDDSQYNEVVNFFKDHPVPIADRSIKQ
DLEMVTINSNWFKAFNQDLSNWIQSK*k*nllq*kifvliidxikknrrklk*tsny
Translated Amino Acid sequence (All Frames) 
Frame A:
IIFIISLVYFNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKDFVF
SGKVDITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELPVTE
NTILSIDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKSFFN
IKITISSHLTALSNMDTTSVIENNDGTKTFIFEQTPKMSTYI---

---eik*tlnwvcwvmlisllnvrkdsklskqtlqvyhqifvxqyllqs*rmvvklinks
slinilnll*slkriltfwyllwlqkrnwlkkpsislylhplevkiviwfslpsqivfvn
slgltspktlikstkhlktllclvvslvvvsplkwmilntmksstfskiiqfqllivqln
ki*kwlqliqigskllikiyqigfnqnknkisynerslf**lix*kkiden*nkhqi

Frame B:
lfl*fhlfililyi*iii*lkkcviini*ltk*id*yyqiisyqvntiyildqi*rilys
aakltlqsillnqpkkslsiqltlkfnq*rs*inkllplptmnqkklqf*nskmnyqlqk
iqfsplislvf*mtn*kvsivqnmlsmvkivilvplnskplmlvvlshvlmnll*nlsli
lkslfhli*llfqiwiqll*lkimmvlkplflnklqr*vli---

---r*skh*igyvg*c*yrc*m*ekirsfqsrlfkftirysxystcynrkeww*s*stnh
h*sis*iffsr*keflpfgtcfgskrgig*kspqfrfisir*ksr*lygflyppksyssi
rlglphqkl*snqrni*klsfvwsyhw*lshl*ng*fsiq*srqlfqrssssnc*sfn*t
rfrngyn*fklvqsf*srfikldsikikiksltmkdlcfnn**xkkk*tktkinikl

Frame C:
yfynftclf*fytyk**ys*knv*s*tfs*qsr*isitr*yrtk*irfts*tkfkgfciq
rqs*hynqyc*tnqknhypfn*h*nsiskdlkstsyfryll*trrscnfripr*itsyrk
ynslh*fhwyfk*qikrflsfkiccqw*rslywyhsirsh*csscfpmf**tcfkifl*y
*nhyfisfncsfkygynfcn*k**wy*nlyf*tnskdeyly---

---DKVNTKLGMLGDADIVAECKKRFEAFKADSSSLPSDIRXTVLATIVKNGGEADQQII
IDQYLKSSLVAEKNSYLLVLALAPKEELVEKALNFALSPSVRSQDSYMVFFTLPNRIRQF
AWAYLTKNFNQINETFKNSPLFGRIIGSCLTSKMDDSQYNEVVNFFKDHPVPIADRSIKQ
DLEMVTINSNWFKAFNQDLSNWIQSK*k*nllq*kifvliidxikknrrklk*tsny
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP634 (VHP634Q) /CSM/VH/VHP6-B/VHP634Q.Seq.d/                       2456   0.0
VHJ836 (VHJ836Q) /CSM/VH/VHJ8-B/VHJ836Q.Seq.d/                       1322   0.0
VHJ747 (VHJ747Q) /CSM/VH/VHJ7-B/VHJ747Q.Seq.d/                       1316   0.0
VHQ164 (VHQ164Q) /CSM/VH/VHQ1-C/VHQ164Q.Seq.d/                       1314   0.0
VHP622 (VHP622Q) /CSM/VH/VHP6-A/VHP622Q.Seq.d/                       1314   0.0
VHP237 (VHP237Q) /CSM/VH/VHP2-B/VHP237Q.Seq.d/                       1314   0.0
VHP192 (VHP192Q) /CSM/VH/VHP1-D/VHP192Q.Seq.d/                       1314   0.0
VHO691 (VHO691Q) /CSM/VH/VHO6-D/VHO691Q.Seq.d/                       1314   0.0
VHO418 (VHO418Q) /CSM/VH/VHO4-A/VHO418Q.Seq.d/                       1314   0.0
VHO346 (VHO346Q) /CSM/VH/VHO3-B/VHO346Q.Seq.d/                       1314   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446288) Dictyostelium discoideum cDNA clone:ddv62c10, 3' ...  1302   0.0    2
(BJ446740) Dictyostelium discoideum cDNA clone:ddv63o15, 3' ...  1294   0.0    2
(BJ446256) Dictyostelium discoideum cDNA clone:ddv62k06, 3' ...  1294   0.0    2
(BJ446156) Dictyostelium discoideum cDNA clone:ddv61g23, 3' ...  1294   0.0    2
(BJ446069) Dictyostelium discoideum cDNA clone:ddv61e17, 3' ...  1294   0.0    2
(BJ446012) Dictyostelium discoideum cDNA clone:ddv61i10, 3' ...  1294   0.0    2
(BJ445838) Dictyostelium discoideum cDNA clone:ddv60e24, 3' ...  1294   0.0    2
(BJ445826) Dictyostelium discoideum cDNA clone:ddv60c23, 3' ...  1294   0.0    2
(BJ445715) Dictyostelium discoideum cDNA clone:ddv60l12, 3' ...  1294   0.0    2
(BJ445586) Dictyostelium discoideum cDNA clone:ddv59o23, 3' ...  1294   0.0    2
dna update 2008.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY631393_1(AY631393|pid:none) Dictyostelium discoideum puromycin...   209   2e-52
AF327435_1(AF327435|pid:none) Drosophila melanogaster puromycin-...   162   2e-38
AE014296_282(AE014296|pid:none) Drosophila melanogaster chromoso...   162   3e-38
AE014296_281(AE014296|pid:none) Drosophila melanogaster chromoso...   162   3e-38
AM270075_67(AM270075|pid:none) Aspergillus niger contig An04c014...   145   3e-33
AP007157_574(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...   143   2e-32
EF678434_1(EF678434|pid:none) Picea sitchensis clone WS02921_A14...   140   1e-31
(P32454) RecName: Full=Aminopeptidase 2, mitochondrial;         ...   139   2e-31
S37794(S37794;S37987;S44571;S19642) aminopeptidase yscII (EC 3.4...   139   2e-31
EF676179_1(EF676179|pid:none) Picea sitchensis clone WS02717_G19...   139   2e-31
protein update 2009. 7.21
PSORT 

 psg: 0.98  gvh: 0.36  alm: 0.35  top: 0.57  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for VHP634 is cyt
5' end seq. ID VHP634F
5' end seq. 
>VHP634F.Seq
ATTATTTTTATAATTTCACTTGTTTATTTTAATTTTATACATATAAATAATAATATAGTT
GAAAAAATGTGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGAT
AATATCGTACCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTC
AGCGGCAAAGTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCAT
TCAATTGACATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACC
TACTATGAACCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAA
AATACAATTCTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTAT
CGTTCAAAATATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCC
ACTGATGCTCGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAAT
ATTAAAATCACTATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGTA
ATTGAAAATAATGATGGTACTAAAACCTTTATTTTTGAACAAACTCCAAAGATGAGTACT
TATATTNNNNNNNNNN
Length of 5' end seq. 676
3' end seq. ID VHP634Z
3' end seq. 
>VHP634Z.Seq
NNNNNNNNNNGAGATAAAGTAAACACTAAATTGGGTATGTTGGGTGATGCTGATATCGTT
GCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTTCAAGTTTACCATCAGAT
ATTCGTTNTACAGTACTTGCTACAATCGTAAAGAATGGTGGTGAAGCTGATCAACAAATC
ATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGAATTCTTACCTTTTGGTA
CTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCAATTTCGCTTTATCTCCA
TCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCCCAAATCGTATTCGTCAA
TTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAACGAAACATTTAAAAACTCT
CCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAATGGATGATTCTCAATAC
AATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTGCTGATCGTTCAATTAAA
CAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAGCTTTTAATCAAGATTTA
TCAAATTGGATTCAATCAAAATAAAAATAAAATCTCTTACAATGAAAGATCTTTGTTTTA
ATAATTGATAGNATAAAAAAAAATAGACGAAAACTAAAATAAACATCAAATTAT
Length of 3' end seq. 714
Connected seq. ID VHP634P
Connected seq. 
>VHP634P.Seq
ATTATTTTTATAATTTCACTTGTTTATTTTAATTTTATACATATAAATAATAATATAGTT
GAAAAAATGTGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGAT
AATATCGTACCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATTC
AGCGGCAAAGTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCAT
TCAATTGACATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTACC
TACTATGAACCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGAA
AATACAATTCTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTAT
CGTTCAAAATATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGCC
ACTGATGCTCGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAAT
ATTAAAATCACTATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGTA
ATTGAAAATAATGATGGTACTAAAACCTTTATTTTTGAACAAACTCCAAAGATGAGTACT
TATATT----------GAGATAAAGTAAACACTAAATTGGGTATGTTGGGTGATGCTGAT
ATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTTCAAGTTTACCA
TCAGATATTCGTTNTACAGTACTTGCTACAATCGTAAAGAATGGTGGTGAAGCTGATCAA
CAAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGAATTCTTACCTT
TTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCAATTTCGCTTTA
TCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCCCAAATCGTATT
CGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAACGAAACATTTAAA
AACTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAATGGATGATTCT
CAATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTGCTGATCGTTCA
ATTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAGCTTTTAATCAA
GATTTATCAAATTGGATTCAATCAAAATAAAAATAAAATCTCTTACAATGAAAGATCTTT
GTTTTAATAATTGATAGNATAAAAAAAAATAGACGAAAACTAAAATAAACATCAAATTAT
Length of connected seq. 1370
Full length Seq ID -
Full length Seq. -
Length of full length seq. -