VHP622 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHP622
Library	VH (Link to library)
Clone ID	VHP622 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16379-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHP6-A/VHP622Q.Seq.d/
Representative seq. ID	VHP622P (Link to Original site)
Representative DNA sequence	>VHP622 (VHP622Q) /CSM/VH/VHP6-A/VHP622Q.Seq.d/ AATTTCGATTATTATTTTTATAATTTCACTTGTTTATTTTAATTTTATACATATAAATAA TAATATAGTTGAAAAAATGTGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGT ATTACCAGATAATATCGTACCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGA TTTTGTATTCAGCGGCAAAGTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAAT CATTATCCATTCAATTGACATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTAC TTCCGTTACCTACTATGAACCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACC AGTTACAGAAAATACAATTCTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAA AGGTTTCTATCGTTCAAAATATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCA ATTCGAAGCCACTGATGCTCGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATC TTTCTTTAATATTAAAATCACTATTTCATCTCATTTAACTGCTCTTTCAAATATGGATAC AACTTCTGTAATTGAAAATAATGATGGTACXXXXXXXXXXTTCGAGCCAACCAAAGGTGA ACCATCTTCAGATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGTATGTTGGGTGA TGCTGATATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTTCAAG TTTACCATCAGATATTCGTTCTACAGTACTTGCTACAATCGTAAAGAATGGTGGTGAAGC TGATCAACAAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGAATTC TTACCTTTTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCAATTT CGCTTTATCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCCCAAA TCGTGTTCGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAACGAAAC ATTTAAAAACTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAATGGA TGATTCTCAATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTGCTGA TCGTTCAATTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAGCTTT TAATCAAGATTTATCAAATTGGATTCAATCAAAATAAAAATAAAATCTCTTACAATGAAA GATCTTTGTTTTAATAATTGATAGGATAAAAAAAAAGAGACGAAAACTAAAATAAACATC AAATTATTGTTTTCCTTTTAAAACA
sequence update	2002.10.25
Translated Amino Acid sequence	ISIIIFIISLVYFNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKD FVFSGKVDITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELP VTENTILSIDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKS FFNIKITISSHLTALSNMDTTSVIENNDG--- ---FEPTKGEPSSDTLLRDKVNTKLGMLGDADIVAECKKRFEAFKADSSSLPSDIRSTVL ATIVKNGGEADQQIIIDQYLKSSLVAEKNSYLLVLALAPKEELVEKALNFALSPSVRSQD SYMVFFTLPNRVRQFAWAYLTKNFNQINETFKNSPLFGRIIGSCLTSKMDDSQYNEVVNF FKDHPVPIADRSIKQDLEMVTINSNWFKAFNQDLSNWIQSKknllqkifvliidrik kkrrklktsnycfpfkt
Translated Amino Acid sequence (All Frames)	Frame A: nfdyyfynftclffytykysknvstfsqsrisitryrtkirftstkfkg fciqrqshynqyctnqknhypfnhnsiskdlkstsyfrylltrrscnfriprit syrkynslhfhwyfkqikrflsfkiccqwrslywyhsirshcsscfpmftcfki flynhyfisfncsfkygynfcnk*wy--- ---FEPTKGEPSSDTLLRDKVNTKLGMLGDADIVAECKKRFEAFKADSSSLPSDIRSTVL ATIVKNGGEADQQIIIDQYLKSSLVAEKNSYLLVLALAPKEELVEKALNFALSPSVRSQD SYMVFFTLPNRVRQFAWAYLTKNFNQINETFKNSPLFGRIIGSCLTSKMDDSQYNEVVNF FKDHPVPIADRSIKQDLEMVTINSNWFKAFNQDLSNWIQSKknllqkifvliidrik kkrrklktsnycfpfkt Frame B: ISIIIFIISLVYFNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKD FVFSGKVDITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELP VTENTILSIDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKS FFNIKITISSHLTALSNMDTTSVIENNDG--- ---ssqpkvnhlqipceiktlnwvcwvmlisllnvrkdsklskqtlqvyhqifvlqyl lqsrmvvklinksslinilnllslkriltfwyllwlqkrnwlkkpsislylhplevki viwfslpsqivfvnslgltspktlikstkhlktllclvvslvvvsplkwmilntmksstf skiiqfqllivqlnkikwlqliqigskllikiyqigfnqnknkisynerslf*ligk krdennkhqiivfllk Frame C: frllflfhlfililyiiiilkkcviiniltkidyyqiisyqvntiyildqiri lysaakltlqsillnqpkkslsiqltlkfnqrsinkllplptmnqkklqfnskmnyq lqkiqfsplislvfmtnkvsivqnmlsmvkivilvplnskplmlvvlshvlmnllnl slilkslfhlillfqiwiqlllkimmv--- ---ranqrtifrylvkrskhigyvgcyrcmekirsfqsrlfkftirysfystc ynrkewwsstnhhsisiffsrkeflpfgtcfgskrgigkspqfrfisirksr* lygflyppkscssirlglphqklsnqrniklsfvwsyhwlshlngfsiqsrqlf qrssssncsfntrfrngynfklvqsfsrfikldsikikiksltmkdlcfnn*dkk ketktkinikllfsfn
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHP622 (VHP622Q) /CSM/VH/VHP6-A/VHP622Q.Seq.d/ 2506 0.0 VHK144 (VHK144Q) /CSM/VH/VHK1-B/VHK144Q.Seq.d/ 1463 0.0 VHH648 (VHH648Q) /CSM/VH/VHH6-B/VHH648Q.Seq.d/ 1463 0.0 AHL571 (AHL571Q) /CSM/AH/AHL5-C/AHL571Q.Seq.d/ 1459 0.0 VHP237 (VHP237Q) /CSM/VH/VHP2-B/VHP237Q.Seq.d/ 1457 0.0 VHE494 (VHE494Q) /CSM/VH/VHE4-D/VHE494Q.Seq.d/ 1449 0.0 AHO229 (AHO229Q) /CSM/AH/AHO2-B/AHO229Q.Seq.d/ 1449 0.0 AHF246 (AHF246Q) /CSM/AH/AHF2-B/AHF246Q.Seq.d/ 1449 0.0 VHP192 (VHP192Q) /CSM/VH/VHP1-D/VHP192Q.Seq.d/ 1447 0.0 VHB463 (VHB463Q) /CSM/VH/VHB4-C/VHB463Q.Seq.d/ 1447 0.0
own update	2009. 4. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446256) Dictyostelium discoideum cDNA clone:ddv62k06, 3' ... 1402 0.0 2 (BJ446156) Dictyostelium discoideum cDNA clone:ddv61g23, 3' ... 1402 0.0 3 (BJ446012) Dictyostelium discoideum cDNA clone:ddv61i10, 3' ... 1402 0.0 2 (BJ445715) Dictyostelium discoideum cDNA clone:ddv60l12, 3' ... 1402 0.0 2 (BJ442912) Dictyostelium discoideum cDNA clone:ddv51g11, 3' ... 1402 0.0 2 (BJ442621) Dictyostelium discoideum cDNA clone:ddv50p09, 3' ... 1402 0.0 2 (BJ441539) Dictyostelium discoideum cDNA clone:ddv47c05, 3' ... 1402 0.0 1 (BJ441354) Dictyostelium discoideum cDNA clone:ddv46o12, 3' ... 1402 0.0 2 (BJ439263) Dictyostelium discoideum cDNA clone:ddv39l24, 3' ... 1402 0.0 2 (BJ437257) Dictyostelium discoideum cDNA clone:ddv33n16, 3' ... 1402 0.0 2
dna update	2008.12.20
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AY631393_1(AY631393\|pid:none) Dictyostelium discoideum puromycin... 230 1e-58 AF327435_1(AF327435\|pid:none) Drosophila melanogaster puromycin-... 148 4e-34 AE014296_282(AE014296\|pid:none) Drosophila melanogaster chromoso... 148 5e-34 AE014296_281(AE014296\|pid:none) Drosophila melanogaster chromoso... 148 5e-34 AM270075_67(AM270075\|pid:none) Aspergillus niger contig An04c014... 132 2e-29 AP007157_574(AP007157\|pid:none) Aspergillus oryzae RIB40 genomic... 130 2e-28 EF678434_1(EF678434\|pid:none) Picea sitchensis clone WS02921_A14... 129 3e-28 EF676179_1(EF676179\|pid:none) Picea sitchensis clone WS02717_G19... 128 4e-28 AP005572_11(AP005572\|pid:none) Oryza sativa Japonica Group genom... 127 7e-28 AM920433_347(AM920433\|pid:none) Penicillium chrysogenum Wisconsi... 126 2e-27
protein update	2009. 7.21
PSORT	psg: 0.99 gvh: 0.36 alm: 0.25 top: 0.57 tms: 0.07 mit: 0.25 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.02 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 52.0 %: nuclear 28.0 %: cytoplasmic 8.0 %: Golgi 8.0 %: mitochondrial 4.0 %: vesicles of secretory system >> prediction for VHP622 is nuc
5' end seq. ID	VHP622F
5' end seq.	>VHP622F.Seq AATTTCGATTATTATTTTTATAATTTCACTTGTTTATTTTAATTTTATACATATAAATAA TAATATAGTTGAAAAAATGTGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGT ATTACCAGATAATATCGTACCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGA TTTTGTATTCAGCGGCAAAGTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAAT CATTATCCATTCAATTGACATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTAC TTCCGTTACCTACTATGAACCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACC AGTTACAGAAAATACAATTCTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAA AGGTTTCTATCGTTCAAAATATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCA ATTCGAAGCCACTGATGCTCGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATC TTTCTTTAATATTAAAATCACTATTTCATCTCATTTAACTGCTCTTTCAAATATGGATAC AACTTCTGTAATTGAAAATAATGATGGTACNNNNNNNNNN
Length of 5' end seq.	640
3' end seq. ID	VHP622Z
3' end seq.	>VHP622Z.Seq NNNNNNNNNNTTCGAGCCAACCAAAGGTGAACCATCTTCAGATACCTTGTTAAGAGATAA AGTAAACACTAAATTGGGTATGTTGGGTGATGCTGATATCGTTGCTGAATGTAAGAAAAG ATTCGAAGCTTTCAAAGCAGACTCTTCAAGTTTACCATCAGATATTCGTTCTACAGTACT TGCTACAATCGTAAAGAATGGTGGTGAAGCTGATCAACAAATCATCATTGATCAATATCT TAAATCTTCTTTAGTCGCTGAAAAGAATTCTTACCTTTTGGTACTTGCTTTGGCTCCAAA AGAGGAATTGGTTGAAAAAGCCCTCAATTTCGCTTTATCTCCATCCGTTAGAAGTCAAGA TAGTTATATGGTTTTCTTTACCCTCCCAAATCGTGTTCGTCAATTCGCTTGGGCTTACCT CACCAAAAACTTTAATCAAATCAACGAAACATTTAAAAACTCTCCTTTGTTTGGTCGTAT CATTGGTAGTTGTCTCACCTCTAAAATGGATGATTCTCAATACAATGAAGTCGTCAACTT TTTCAAAGATCATCCAGTTCCAATTGCTGATCGTTCAATTAAACAAGATTTAGAAATGGT TACAATTAATTCAAATTGGTTCAAAGCTTTTAATCAAGATTTATCAAATTGGATTCAATC AAAATAAAAATAAAATCTCTTACAATGAAAGATCTTTGTTTTAATAATTGATAGGATAAA AAAAAAGAGACGAAAACTAAAATAAACATCAAATTATTGTTTTCCTTTTAAAACA
Length of 3' end seq.	775
Connected seq. ID	VHP622P
Connected seq.	>VHP622P.Seq AATTTCGATTATTATTTTTATAATTTCACTTGTTTATTTTAATTTTATACATATAAATAA TAATATAGTTGAAAAAATGTGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGT ATTACCAGATAATATCGTACCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGA TTTTGTATTCAGCGGCAAAGTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAAT CATTATCCATTCAATTGACATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTAC TTCCGTTACCTACTATGAACCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACC AGTTACAGAAAATACAATTCTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAA AGGTTTCTATCGTTCAAAATATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCA ATTCGAAGCCACTGATGCTCGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATC TTTCTTTAATATTAAAATCACTATTTCATCTCATTTAACTGCTCTTTCAAATATGGATAC AACTTCTGTAATTGAAAATAATGATGGTAC----------TTCGAGCCAACCAAAGGTGA ACCATCTTCAGATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGTATGTTGGGTGA TGCTGATATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTTCAAG TTTACCATCAGATATTCGTTCTACAGTACTTGCTACAATCGTAAAGAATGGTGGTGAAGC TGATCAACAAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGAATTC TTACCTTTTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCAATTT CGCTTTATCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCCCAAA TCGTGTTCGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAACGAAAC ATTTAAAAACTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAATGGA TGATTCTCAATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTGCTGA TCGTTCAATTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAGCTTT TAATCAAGATTTATCAAATTGGATTCAATCAAAATAAAAATAAAATCTCTTACAATGAAA GATCTTTGTTTTAATAATTGATAGGATAAAAAAAAAGAGACGAAAACTAAAATAAACATC AAATTATTGTTTTCCTTTTAAAACA
Length of connected seq.	1395
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas