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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP605
Library VH
(Link to library)
Clone ID VHP605
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11264-1
Original site URL
Representative seq. ID VHP605P
(Link to Original site)
Representative DNA sequence 
>VHP605 (VHP605Q) /CSM/VH/VHP6-A/VHP605Q.Seq.d/
GTTTACTATCACTTGAAGATCCAGTAACTAAATATATACCTGATTTTCATCCAAAAAATC
CACAATCAACAACTTATTCAAATAAAAAAGAATTTGAACCTGATCTTTATAAGAAAATTA
CAGTTTTTAATTTAATTAGACATACATCTGGATTAATTAGAGAACCAATTGAAGGTAATT
ATTTTAATGAAATTCAAAGTGATTTAATTACATTAGTTAAAACAATGAATGAATCATCAT
TGGTTAGTGAACCATGGACAGAACATAAATATTCAAATGCAGCAGTCGCAATTGCAGGTT
ATATTGTTGAAGTTGTTAGTGGTGAAACATTTCCAGATTATGTTGAAAAGAATATTTTAA
AACCATTGGGTATGTTAAATTCTACATTTAAGAATGAATATGCTTATACAGAAGTAAAAG
ATGAAAATCAATTAAGAACAGCCACTGGACATATGTGGAGATATTGGGATGAGACTACAA
CCGATTTATCAGTTTATAAAGAAGCACCATTAACTTATTTTGGTATGTTTCCAGCCCGCT
GGTCTTGCAACAACTGTTGATGATATTTCCAAGTTTTTACAATTCTTTTTACAAGAXXXX
XXXXXXCAACTGCAATGTATAATAATGAAATCATTTCATTCCATATGAAAAATGGTGTAC
CACTATTCTTATCACTTAGTGGTATTAAATTTAAATTTCAATCAATGTCAACTCAACAAC
AACCAACAACAACCAGGTGTTTATCCAAAAGATATATGTTCAAAAGCATTAGCTGAATCA
TTTAATACTCCATTCCCATTTGAGGATGAAAATGCAAGAATCAATCATAATTTAGTAGAT
TTATCAAGCATATCACCAACTCTTAAATTTGATATTAAATATGCAACCACTGATAACTTT
ACAGGTATTCAACTTTATAAACAAGCAAAAGCATTTTTAAATAAAGATGCTGCTAAATGT
TTATTATCAGCTCATAATTGGTTAGTAGAGAATTGGAATGTTGGTATTATAGTTTTCGAT
TCCTATAGACCATGGAATATCACATGGACAATGGCAGAATCGGTTATACCAGAATTTAGA
GGTCTATATGTTGCACCACCAACCAAAGGTTCAGTTCATAATCGTGGTGGTGCACTTGAT
ATCTCATTATATGATTTATCAAATGGTAAAGTAATTGAAATGGTTGGTGATTTCGATGAA
TTTAGTATTCGTTCTCATCGTTCTTATTTTGGTGGTTCAGAACTTCAACGTTGGTATAGA
AAACTTTTAACAATTGCATTAATCAATAATAATTTCAGACCAAATGAACACGAATGGTGG
CATTTTGATATAATTGTTGATAAACCATTAGCAGTTTTAAATTTACAATTNATCAAATTA
ATTAAAATATAAAATAAAATAAAATAAATAATTAATTTTTTT
sequence update 2002.10.25
Translated Amino Acid sequence 
ftit*rssn*iyt*fsskkstinnlfk*kri*t*sl*enysf*fn*tyiwin*rtn*r*l
f**nsk*fnyis*nne*iiig**tmdrt*ifkcssrncrlyc*sc*w*nisrlc*keyfk
tigyvkfyi*e*iclyrskr*ksiknshwtyveilg*dynrfisl*RSTINLFWYVSSPL
VLQQLLMIFPSFYNSFYK---

---TAMYNNEIISFHMKNGVPLFLSLSGIKFKFQSMSTQQQPTTTRCLSKRYMFKSIS*i
i*ysipi*g*kcknqs*fsrfikhitns*i*y*icnh**lyrystl*tsksifk*rcc*m
fiiss*lvsrelecwyysfrfl*tmeyhmdngrigytri*rsiccttnqrfss*swwct*
ylii*fikw*sn*ngw*fr*i*ysfssflfwwfrtstlv*ktfnncinq**fqtk*trmv
af*ync**tissfkftixqin*nik*nkinn*ff
Translated Amino Acid sequence (All Frames) 
Frame A:
vyyhlkiq*lniylifiqkihnqqliqikknlnlifirklqfli*ldihld*lenqlkvi
ilmkfkvi*lh*lkq*mnhhwlvnhgqniniqmqqsqlqvillkllvvkhfqimlkrif*
nhwvc*ilhlrmnmliqk*kmkin*eqpldicgdigmrlqpiyqfikkhh*lilvcfqpa
glattvddiskflqfflq---

---qlqciimksfhsi*kmvyhysyhlvvlnlnfnqcqlnnnqqqpgvypkdicskalae
sfntpfpfedenarinhnlvdlssisptlkfdikyattdnftgiqlykqakaflnkdaak
cllsahnwlvenwnvgiivfdsyrpwnitwtmaesvipefrglyvapptkgsvhnrggal
dislydlsngkviemvgdfdefsirshrsyfggselqrwyrklltialinnnfrpnehew
whfdiivdkplavlnlqxikliki*nkik*iinff

Frame B:
ftit*rssn*iyt*fsskkstinnlfk*kri*t*sl*enysf*fn*tyiwin*rtn*r*l
f**nsk*fnyis*nne*iiig**tmdrt*ifkcssrncrlyc*sc*w*nisrlc*keyfk
tigyvkfyi*e*iclyrskr*ksiknshwtyveilg*dynrfisl*RSTINLFWYVSSPL
VLQQLLMIFPSFYNSFYK---

---ncnv***nhfipyekwcttilit*wy*i*isinvnstttnnnqvfiqkiyvqkh*ln
hlilhshlrmkmqesiii**iyqayhqllnlilnmqplitlqvfnfinkqkhf*ikmlln
vyyqliig**rigmlvl*fsipidhgishgqwqnrlyqnlevymlhhqpkvqfiivvvhl
ishymiyqmvk*lkwlvismnlvfvlivlilvvqnfnvgienf*qlh*siiisdqmntng
gili*llinh*qf*iynxsn*lkykik*nk*lif

Frame C:
llsledpvtkyipdfhpknpqsttysnkkefepdlykkitvfnlirhtsglirepiegny
fneiqsdlitlvktmnesslvsepwtehkysnaavaiagyivevvsgetfpdyveknilk
plgmlnstfkneyaytevkdenqlrtatghmwrywdetttdlsvykeapltyfgmfparw
scnnc**yfqvftilftr---

---TAMYNNEIISFHMKNGVPLFLSLSGIKFKFQSMSTQQQPTTTRCLSKRYMFKSIS*i
i*ysipi*g*kcknqs*fsrfikhitns*i*y*icnh**lyrystl*tsksifk*rcc*m
fiiss*lvsrelecwyysfrfl*tmeyhmdngrigytri*rsiccttnqrfss*swwct*
ylii*fikw*sn*ngw*fr*i*ysfssflfwwfrtstlv*ktfnncinq**fqtk*trmv
af*ync**tissfkftixqin*nik*nkinn*ff
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP605 (VHP605Q) /CSM/VH/VHP6-A/VHP605Q.Seq.d/                       1322   0.0
VHQ465 (VHQ465Q) /CSM/VH/VHQ4-C/VHQ465Q.Seq.d/                       1229   0.0
AHD309 (AHD309Q) /CSM/AH/AHD3-A/AHD309Q.Seq.d/                       1229   0.0
VHP717 (VHP717Q) /CSM/VH/VHP7-A/VHP717Q.Seq.d/                       1213   0.0
CHF614 (CHF614Q) /CSM/CH/CHF6-A/CHF614Q.Seq.d/                       1172   0.0
AHO103 (AHO103Q) /CSM/AH/AHO1-A/AHO103Q.Seq.d/                       1148   0.0
CHL552 (CHL552Q) /CSM/CH/CHL5-C/CHL552Q.Seq.d/                       1122   0.0
AHO651 (AHO651Q) /CSM/AH/AHO6-C/AHO651Q.Seq.d/                       1122   0.0
SHE619 (SHE619Q) /CSM/SH/SHE6-A/SHE619Q.Seq.d/                       1116   0.0
AHH690 (AHH690Q) /CSM/AH/AHH6-D/AHH690Q.Seq.d/                       1110   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446241) Dictyostelium discoideum cDNA clone:ddv62i02, 3' ...  1265   0.0    2
(BJ349593) Dictyostelium discoideum cDNA clone:dda37b03, 3' ...  1265   0.0    2
(BJ446680) Dictyostelium discoideum cDNA clone:ddv63b18, 3' ...  1263   0.0    1
(BJ446208) Dictyostelium discoideum cDNA clone:ddv62b05, 3' ...  1247   0.0    1
(BJ427340) Dictyostelium discoideum cDNA clone:ddv62i02, 5' ...  1181   0.0    1
(BJ378882) Dictyostelium discoideum cDNA clone:ddc33k04, 3' ...  1172   0.0    2
(BJ356038) Dictyostelium discoideum cDNA clone:dda59e01, 3' ...  1148   0.0    2
(BJ382688) Dictyostelium discoideum cDNA clone:ddc45g13, 3' ...  1122   0.0    2
(BJ356509) Dictyostelium discoideum cDNA clone:dda60e14, 3' ...  1122   0.0    2
(BJ405803) Dictyostelium discoideum cDNA clone:dds33e06, 3' ...  1116   0.0    1
dna update 2008.12.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000473_7444(CP000473|pid:none) Solibacter usitatus Ellin6076, ...   149   2e-34
CP001340_2354(CP001340|pid:none) Caulobacter crescentus NA1000, ...   148   4e-34
AE005673_2256(AE005673|pid:none) Caulobacter crescentus CB15, co...   148   4e-34
CP000360_2741(CP000360|pid:none) Acidobacteria bacterium Ellin34...   145   4e-33
CP000927_1402(CP000927|pid:none) Caulobacter sp. K31, complete g...   143   2e-32
CP001097_1231(CP001097|pid:none) Chlorobium limicola DSM 245, co...   115   5e-24
AP010904_500(AP010904|pid:none) Desulfovibrio magneticus RS-1 DN...   108   5e-22
CP000113_6254(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   105   4e-21
CP000685_4562(CP000685|pid:none) Flavobacterium johnsoniae UW101...   103   2e-20
CU928163_1716(CU928163|pid:none) Escherichia coli UMN026 chromos...    96   2e-18
protein update 2009. 7.21
PSORT 

 psg: 0.96  gvh: 0.50  alm: 0.38  top: 0.50  tms: 0.00  mit: 0.45  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 12.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: peroxisomal
	  4.0 %: vacuolar

>> prediction for VHP605 is mit
5' end seq. ID VHP605F
5' end seq. 
>VHP605F.Seq
GTTTACTATCACTTGAAGATCCAGTAACTAAATATATACCTGATTTTCATCCAAAAAATC
CACAATCAACAACTTATTCAAATAAAAAAGAATTTGAACCTGATCTTTATAAGAAAATTA
CAGTTTTTAATTTAATTAGACATACATCTGGATTAATTAGAGAACCAATTGAAGGTAATT
ATTTTAATGAAATTCAAAGTGATTTAATTACATTAGTTAAAACAATGAATGAATCATCAT
TGGTTAGTGAACCATGGACAGAACATAAATATTCAAATGCAGCAGTCGCAATTGCAGGTT
ATATTGTTGAAGTTGTTAGTGGTGAAACATTTCCAGATTATGTTGAAAAGAATATTTTAA
AACCATTGGGTATGTTAAATTCTACATTTAAGAATGAATATGCTTATACAGAAGTAAAAG
ATGAAAATCAATTAAGAACAGCCACTGGACATATGTGGAGATATTGGGATGAGACTACAA
CCGATTTATCAGTTTATAAAGAAGCACCATTAACTTATTTTGGTATGTTTCCAGCCCGCT
GGTCTTGCAACAACTGTTGATGATATTTCCAAGTTTTTACAATTCTTTTTACAAGANNNN
NNNNNN
Length of 5' end seq. 606
3' end seq. ID VHP605Z
3' end seq. 
>VHP605Z.Seq
NNNNNNNNNNCAACTGCAATGTATAATAATGAAATCATTTCATTCCATATGAAAAATGGT
GTACCACTATTCTTATCACTTAGTGGTATTAAATTTAAATTTCAATCAATGTCAACTCAA
CAACAACCAACAACAACCAGGTGTTTATCCAAAAGATATATGTTCAAAAGCATTAGCTGA
ATCATTTAATACTCCATTCCCATTTGAGGATGAAAATGCAAGAATCAATCATAATTTAGT
AGATTTATCAAGCATATCACCAACTCTTAAATTTGATATTAAATATGCAACCACTGATAA
CTTTACAGGTATTCAACTTTATAAACAAGCAAAAGCATTTTTAAATAAAGATGCTGCTAA
ATGTTTATTATCAGCTCATAATTGGTTAGTAGAGAATTGGAATGTTGGTATTATAGTTTT
CGATTCCTATAGACCATGGAATATCACATGGACAATGGCAGAATCGGTTATACCAGAATT
TAGAGGTCTATATGTTGCACCACCAACCAAAGGTTCAGTTCATAATCGTGGTGGTGCACT
TGATATCTCATTATATGATTTATCAAATGGTAAAGTAATTGAAATGGTTGGTGATTTCGA
TGAATTTAGTATTCGTTCTCATCGTTCTTATTTTGGTGGTTCAGAACTTCAACGTTGGTA
TAGAAAACTTTTAACAATTGCATTAATCAATAATAATTTCAGACCAAATGAACACGAATG
GTGGCATTTTGATATAATTGTTGATAAACCATTAGCAGTTTTAAATTTACAATTNATCAA
ATTAATTAAAATATAAAATAAAATAAAATAAATAATTAATTTTTTT
Length of 3' end seq. 826
Connected seq. ID VHP605P
Connected seq. 
>VHP605P.Seq
GTTTACTATCACTTGAAGATCCAGTAACTAAATATATACCTGATTTTCATCCAAAAAATC
CACAATCAACAACTTATTCAAATAAAAAAGAATTTGAACCTGATCTTTATAAGAAAATTA
CAGTTTTTAATTTAATTAGACATACATCTGGATTAATTAGAGAACCAATTGAAGGTAATT
ATTTTAATGAAATTCAAAGTGATTTAATTACATTAGTTAAAACAATGAATGAATCATCAT
TGGTTAGTGAACCATGGACAGAACATAAATATTCAAATGCAGCAGTCGCAATTGCAGGTT
ATATTGTTGAAGTTGTTAGTGGTGAAACATTTCCAGATTATGTTGAAAAGAATATTTTAA
AACCATTGGGTATGTTAAATTCTACATTTAAGAATGAATATGCTTATACAGAAGTAAAAG
ATGAAAATCAATTAAGAACAGCCACTGGACATATGTGGAGATATTGGGATGAGACTACAA
CCGATTTATCAGTTTATAAAGAAGCACCATTAACTTATTTTGGTATGTTTCCAGCCCGCT
GGTCTTGCAACAACTGTTGATGATATTTCCAAGTTTTTACAATTCTTTTTACAAGA----
------CAACTGCAATGTATAATAATGAAATCATTTCATTCCATATGAAAAATGGTGTAC
CACTATTCTTATCACTTAGTGGTATTAAATTTAAATTTCAATCAATGTCAACTCAACAAC
AACCAACAACAACCAGGTGTTTATCCAAAAGATATATGTTCAAAAGCATTAGCTGAATCA
TTTAATACTCCATTCCCATTTGAGGATGAAAATGCAAGAATCAATCATAATTTAGTAGAT
TTATCAAGCATATCACCAACTCTTAAATTTGATATTAAATATGCAACCACTGATAACTTT
ACAGGTATTCAACTTTATAAACAAGCAAAAGCATTTTTAAATAAAGATGCTGCTAAATGT
TTATTATCAGCTCATAATTGGTTAGTAGAGAATTGGAATGTTGGTATTATAGTTTTCGAT
TCCTATAGACCATGGAATATCACATGGACAATGGCAGAATCGGTTATACCAGAATTTAGA
GGTCTATATGTTGCACCACCAACCAAAGGTTCAGTTCATAATCGTGGTGGTGCACTTGAT
ATCTCATTATATGATTTATCAAATGGTAAAGTAATTGAAATGGTTGGTGATTTCGATGAA
TTTAGTATTCGTTCTCATCGTTCTTATTTTGGTGGTTCAGAACTTCAACGTTGGTATAGA
AAACTTTTAACAATTGCATTAATCAATAATAATTTCAGACCAAATGAACACGAATGGTGG
CATTTTGATATAATTGTTGATAAACCATTAGCAGTTTTAAATTTACAATTNATCAAATTA
ATTAAAATATAAAATAAAATAAAATAAATAATTAATTTTTTT
Length of connected seq. 1412
Full length Seq ID -
Full length Seq. -
Length of full length seq. -