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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP592
Library VH
(Link to library)
Clone ID VHP592
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16315-1
Original site URL
Representative seq. ID VHP592P
(Link to Original site)
Representative DNA sequence 
>VHP592 (VHP592Q) /CSM/VH/VHP5-D/VHP592Q.Seq.d/
AATAAAAAACTGTTATCACAAAAGTTATATTATATTTTTATTTATTTCAATACCTTTGTA
TAAGCACTCCATATATATATATATAATACATAATCATATTTGTAATTAGTGCTATTATTA
TTACTATCGAAATAGTTATTCAATTTTTGGGATTTTAAAATTAAAATAAAAAAAATAACT
ATAAAAATTGTAAAATAGATTAACAAACGCAAAAGGAATATTTTAAAAATTAACCTCTTT
TTTATTCAAATATAATAAATCACCCATATATAGGCAAATATGTATAACATGAGTTTTTGG
CGTAATTTTGGATTTCAACCAATATCACATATTGAAAGTATTTTGGATAGAGATTTCTTC
ACATTAGAAGACTTATTCGATGAAGATGAACTCTTGCAAGAATGTAAAACACAAAACAAA
AGATTAATCGAATTTTTAATTAAGCCAGAATCATTAAATGGAATGTTTGAATTTATCACA
AAAGAAGCCCCAGAAGAGGCTGAAAGAAAGAGAAAAGAAAACTACCCATTTTTAGCATCA
GAAATCTTATGTATGGATATTCAACCTCTCATTGAGGCAGTGTACAGAGATGATTTATAT
TTACAACAATTATATGAATTTTTAAATAAAXXXXXXXXXXCAAATCCATCAAATTTGTCA
AATTATTTTATATAGTGAAAATGATGAACTTAAAATGTCACTTTTAAAGGATGCCAAACT
CCTTGATAGAATCATTGAAGCCGATCAAGCCAACACCAACGAATTAAAACAAGTTAAAGG
TATTAGATATGGTTTTATGGGTTTCTTAAATAGTATTGCCCAATCTATTTGTGATGTTTC
AAAGAATTCACCAGAAATCAAACAAATTGTTGATGAAAATCCAAAATGGGGAGTATTTGT
TACTGAATCGTTAGAACCTGTTTTAAATATTGAAAATGAACCATTAGGTGAATTTAAACC
AAGTTTAATGACTGCACCAGAAAGTGCTGAAGAAGATGACGATCAATATGATAATGATGA
TAATGGTTATGATAACTACGATAGTGTTGGCGATTATGTTAGTGCCGACCAATATCAAGA
TCAAATGGATTATAGCGATGAAGGTGATTATGAAGGTGGTCAAAAACCTATCAATTATAT
TGAAGAGGAAGATGATGAAGAGGAAGATGATGACATACGATTTCAACAACAACAACAACA
ACAACAACAATTAAATCACCACGACAATCAAGATGAATTAAATGAACAACCACAACAACC
ACAACCACAACAAGACGACAAAACTACTCAAGACACTGAAGCAGTTGTAGAAACTCCAAA
AGAATCATCTGTTGACCAAGAATCAACAGAAGCAAAAACTGAATCTTCATAAACTTTAAA
ATAATACCAATAACAACAACAAAATCAC
sequence update 2002.10.25
Translated Amino Acid sequence 
nkkllsqklyyifiyfntfv*alhiyiynt*syl*lvlllllsk*lfnfwdfkikikkit
ikivk*inkrkrnilkinlffiqi**ithi*ANMYNMSFWRNFGFQPISHIESILDRDFF
TLEDLFDEDELLQECKTQNKRLIEFLIKPESLNGMFEFITKEAPEEAERKRKENYPFLAS
EILCMDIQPLIEAVYRDDLYLQQLYEFLNK---

---QIHQICQIILYSENDELKMSLLKDAKLLDRIIEADQANTNELKQVKGIRYGFMGFLN
SIAQSICDVSKNSPEIKQIVDENPKWGVFVTESLEPVLNIENEPLGEFKPSLMTAPESAE
EDDDQYDNDDNGYDNYDSVGDYVSADQYQDQMDYSDEGDYEGGQKPINYIEEEDDEEEDD
DIRFQQQQQQQQQLNHHDNQDELNEQPQQPQPQQDDKTTQDTEAVVETPKESSVDQESTE
AKTESS*tlk*yq*qqqnh
Translated Amino Acid sequence (All Frames) 
Frame A:
nkkllsqklyyifiyfntfv*alhiyiynt*syl*lvlllllsk*lfnfwdfkikikkit
ikivk*inkrkrnilkinlffiqi**ithi*ANMYNMSFWRNFGFQPISHIESILDRDFF
TLEDLFDEDELLQECKTQNKRLIEFLIKPESLNGMFEFITKEAPEEAERKRKENYPFLAS
EILCMDIQPLIEAVYRDDLYLQQLYEFLNK---

---QIHQICQIILYSENDELKMSLLKDAKLLDRIIEADQANTNELKQVKGIRYGFMGFLN
SIAQSICDVSKNSPEIKQIVDENPKWGVFVTESLEPVLNIENEPLGEFKPSLMTAPESAE
EDDDQYDNDDNGYDNYDSVGDYVSADQYQDQMDYSDEGDYEGGQKPINYIEEEDDEEEDD
DIRFQQQQQQQQQLNHHDNQDELNEQPQQPQPQQDDKTTQDTEAVVETPKESSVDQESTE
AKTESS*tlk*yq*qqqnh

Frame B:
ikncyhksyiiflfisiplykhsiyiyiihnhicn*cyyyyyrnsysifgilklk*kk*l
*kl*nrltnakgif*kltsflfkynkspiyrqicit*vfgvildfnqyhilkvfwieiss
h*ktysmkmnscknvkhktkd*snf*lsqnh*meclnlsqkkpqkrlkerekktthf*hq
ksyvwifnlslrqctemiyiynnymnf*i---

---ksikfvklfyivkmmnlkchf*rmpnslieslkpikptptn*nklkvldmvlwvs*i
vlpnlfvmfqrihqksnkllmkiqngeylllnr*nlf*ilkmnh*vnlnqv**lhqkvlk
kmtinmimmimvmittivlaimlvptnikikwiiamkvimkvvknlsiilkrkmmkrkmm
tydfnnnnnnnnn*itttikmn*mnnhnnhnhnkttkllktlkql*klqknhlltknqqk
qklnlhkl*nntnnnnki

Frame C:
*ktvitkvilyfylfqylcistpyiyi*yiiifvisaiiitieiviqflgf*n*nkknny
knckid*qtqkeyfkn*plfysniinhpyigkyv*hefla*fwistnity*kyfg*rflh
irrlir*r*tlarm*ntkqkinrifn*ariikwnv*iyhkrsprrg*kkekrklpifsir
nlmygystsh*gsvqr*fifttii*ifk*---

---npsnlsnyfi**k**t*nvtfkgcqtp**nh*srssqhqrikts*ry*iwfygflk*
ycpiyl*cfkeftrnqtnc**kskmgsicy*ivrtcfky*k*tir*i*tkfndctrkc*r
r*rsi*****wl**lr*cwrlc*crpisrsngl*r*r*l*rwsktyqly*rgr**rgr**
htisttttttttiksprqsr*ik*tttttttttrrqnysrh*sscrnskriic*prinrs
kn*ifinfkiipitttks
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP592 (VHP592Q) /CSM/VH/VHP5-D/VHP592Q.Seq.d/                       1899   0.0
VHP518 (VHP518Q) /CSM/VH/VHP5-A/VHP518Q.Seq.d/                       1873   0.0
VHB170 (VHB170Q) /CSM/VH/VHB1-C/VHB170Q.Seq.d/                       1068   0.0
VHA160 (VHA160Q) /CSM/VH/VHA1-C/VHA160Q.Seq.d/                       1068   0.0
SFE787 (SFE787Q) /CSM/SF/SFE7-D/SFE787Q.Seq.d/                       1068   0.0
AHD563 (AHD563Q) /CSM/AH/AHD5-C/AHD563Q.Seq.d/                       1068   0.0
AHM222 (AHM222Q) /CSM/AH/AHM2-A/AHM222Q.Seq.d/                       1066   0.0
VHJ164 (VHJ164Q) /CSM/VH/VHJ1-C/VHJ164Q.Seq.d/                       1063   0.0
AFL457 (AFL457Q) /CSM/AF/AFL4-C/AFL457Q.Seq.d/                       1063   0.0
AHH323 (AHH323Q) /CSM/AH/AHH3-A/AHH323Q.Seq.d/                       1057   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446471) Dictyostelium discoideum cDNA clone:ddv62g23, 3' ...  1076   0.0    1
(BJ446213) Dictyostelium discoideum cDNA clone:ddv62c05, 3' ...  1068   0.0    1
(BJ437243) Dictyostelium discoideum cDNA clone:ddv33k17, 3' ...  1068   0.0    1
(BJ436574) Dictyostelium discoideum cDNA clone:ddv31g15, 3' ...  1068   0.0    1
(BJ398091) Dictyostelium discoideum cDNA clone:dds10n21, 3' ...  1068   0.0    1
(BJ350094) Dictyostelium discoideum cDNA clone:dda38m15, 3' ...  1068   0.0    1
(BJ354911) Dictyostelium discoideum cDNA clone:dda55k06, 3' ...  1066   0.0    1
(BJ442383) Dictyostelium discoideum cDNA clone:ddv49o15, 3' ...  1063   0.0    1
(BJ345374) Dictyostelium discoideum cDNA clone:dda23b16, 3' ...  1063   0.0    1
(BJ351967) Dictyostelium discoideum cDNA clone:dda45n05, 3' ...  1057   0.0    1
dna update 2008.12.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC121957_1(BC121957|pid:none) Xenopus tropicalis hypothetical pr...    65   6e-09
(Q6NRI0) RecName: Full=Serine/threonine-protein phosphatase 6 re...    65   8e-09
CR749815_1(CR749815|pid:none) Homo sapiens mRNA; cDNA DKFZp781E1...    62   4e-08
(Q922D4) RecName: Full=Serine/threonine-protein phosphatase 6 re...    62   4e-08
AF264780_1(AF264780|pid:none) Homo sapiens sporulation-induced t...    62   4e-08
AK018652_1(AK018652|pid:none) Mus musculus adult male cecum cDNA...    62   4e-08
BC107599_1(BC107599|pid:none) Homo sapiens SAPS domain family, m...    62   4e-08
CR933658_1(CR933658|pid:none) Homo sapiens mRNA; cDNA DKFZp781E2...    62   4e-08
AB385481_1(AB385481|pid:none) Synthetic construct DNA, clone: pF...    62   4e-08
AB371897_1(AB371897|pid:none) Equus caballus SAPS3 mRNA for spor...    62   5e-08
protein update 2009. 7.21
PSORT 

 psg: 0.80  gvh: 0.33  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.03
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VHP592 is cyt
5' end seq. ID VHP592F
5' end seq. 
>VHP592F.Seq
AATAAAAAACTGTTATCACAAAAGTTATATTATATTTTTATTTATTTCAATACCTTTGTA
TAAGCACTCCATATATATATATATAATACATAATCATATTTGTAATTAGTGCTATTATTA
TTACTATCGAAATAGTTATTCAATTTTTGGGATTTTAAAATTAAAATAAAAAAAATAACT
ATAAAAATTGTAAAATAGATTAACAAACGCAAAAGGAATATTTTAAAAATTAACCTCTTT
TTTATTCAAATATAATAAATCACCCATATATAGGCAAATATGTATAACATGAGTTTTTGG
CGTAATTTTGGATTTCAACCAATATCACATATTGAAAGTATTTTGGATAGAGATTTCTTC
ACATTAGAAGACTTATTCGATGAAGATGAACTCTTGCAAGAATGTAAAACACAAAACAAA
AGATTAATCGAATTTTTAATTAAGCCAGAATCATTAAATGGAATGTTTGAATTTATCACA
AAAGAAGCCCCAGAAGAGGCTGAAAGAAAGAGAAAAGAAAACTACCCATTTTTAGCATCA
GAAATCTTATGTATGGATATTCAACCTCTCATTGAGGCAGTGTACAGAGATGATTTATAT
TTACAACAATTATATGAATTTTTAAATAAANNNNNNNNNN
Length of 5' end seq. 640
3' end seq. ID VHP592Z
3' end seq. 
>VHP592Z.Seq
NNNNNNNNNNCAAATCCATCAAATTTGTCAAATTATTTTATATAGTGAAAATGATGAACT
TAAAATGTCACTTTTAAAGGATGCCAAACTCCTTGATAGAATCATTGAAGCCGATCAAGC
CAACACCAACGAATTAAAACAAGTTAAAGGTATTAGATATGGTTTTATGGGTTTCTTAAA
TAGTATTGCCCAATCTATTTGTGATGTTTCAAAGAATTCACCAGAAATCAAACAAATTGT
TGATGAAAATCCAAAATGGGGAGTATTTGTTACTGAATCGTTAGAACCTGTTTTAAATAT
TGAAAATGAACCATTAGGTGAATTTAAACCAAGTTTAATGACTGCACCAGAAAGTGCTGA
AGAAGATGACGATCAATATGATAATGATGATAATGGTTATGATAACTACGATAGTGTTGG
CGATTATGTTAGTGCCGACCAATATCAAGATCAAATGGATTATAGCGATGAAGGTGATTA
TGAAGGTGGTCAAAAACCTATCAATTATATTGAAGAGGAAGATGATGAAGAGGAAGATGA
TGACATACGATTTCAACAACAACAACAACAACAACAACAATTAAATCACCACGACAATCA
AGATGAATTAAATGAACAACCACAACAACCACAACCACAACAAGACGACAAAACTACTCA
AGACACTGAAGCAGTTGTAGAAACTCCAAAAGAATCATCTGTTGACCAAGAATCAACAGA
AGCAAAAACTGAATCTTCATAAACTTTAAAATAATACCAATAACAACAACAAAATCAC
Length of 3' end seq. 778
Connected seq. ID VHP592P
Connected seq. 
>VHP592P.Seq
AATAAAAAACTGTTATCACAAAAGTTATATTATATTTTTATTTATTTCAATACCTTTGTA
TAAGCACTCCATATATATATATATAATACATAATCATATTTGTAATTAGTGCTATTATTA
TTACTATCGAAATAGTTATTCAATTTTTGGGATTTTAAAATTAAAATAAAAAAAATAACT
ATAAAAATTGTAAAATAGATTAACAAACGCAAAAGGAATATTTTAAAAATTAACCTCTTT
TTTATTCAAATATAATAAATCACCCATATATAGGCAAATATGTATAACATGAGTTTTTGG
CGTAATTTTGGATTTCAACCAATATCACATATTGAAAGTATTTTGGATAGAGATTTCTTC
ACATTAGAAGACTTATTCGATGAAGATGAACTCTTGCAAGAATGTAAAACACAAAACAAA
AGATTAATCGAATTTTTAATTAAGCCAGAATCATTAAATGGAATGTTTGAATTTATCACA
AAAGAAGCCCCAGAAGAGGCTGAAAGAAAGAGAAAAGAAAACTACCCATTTTTAGCATCA
GAAATCTTATGTATGGATATTCAACCTCTCATTGAGGCAGTGTACAGAGATGATTTATAT
TTACAACAATTATATGAATTTTTAAATAAA----------CAAATCCATCAAATTTGTCA
AATTATTTTATATAGTGAAAATGATGAACTTAAAATGTCACTTTTAAAGGATGCCAAACT
CCTTGATAGAATCATTGAAGCCGATCAAGCCAACACCAACGAATTAAAACAAGTTAAAGG
TATTAGATATGGTTTTATGGGTTTCTTAAATAGTATTGCCCAATCTATTTGTGATGTTTC
AAAGAATTCACCAGAAATCAAACAAATTGTTGATGAAAATCCAAAATGGGGAGTATTTGT
TACTGAATCGTTAGAACCTGTTTTAAATATTGAAAATGAACCATTAGGTGAATTTAAACC
AAGTTTAATGACTGCACCAGAAAGTGCTGAAGAAGATGACGATCAATATGATAATGATGA
TAATGGTTATGATAACTACGATAGTGTTGGCGATTATGTTAGTGCCGACCAATATCAAGA
TCAAATGGATTATAGCGATGAAGGTGATTATGAAGGTGGTCAAAAACCTATCAATTATAT
TGAAGAGGAAGATGATGAAGAGGAAGATGATGACATACGATTTCAACAACAACAACAACA
ACAACAACAATTAAATCACCACGACAATCAAGATGAATTAAATGAACAACCACAACAACC
ACAACCACAACAAGACGACAAAACTACTCAAGACACTGAAGCAGTTGTAGAAACTCCAAA
AGAATCATCTGTTGACCAAGAATCAACAGAAGCAAAAACTGAATCTTCATAAACTTTAAA
ATAATACCAATAACAACAACAAAATCAC
Length of connected seq. 1398
Full length Seq ID -
Full length Seq. -
Length of full length seq. -