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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP571
Library VH
(Link to library)
Clone ID VHP571
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16441-1
Original site URL
Representative seq. ID VHP571P
(Link to Original site)
Representative DNA sequence 
>VHP571 (VHP571Q) /CSM/VH/VHP5-C/VHP571Q.Seq.d/
ATTTATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAAT
GAAGATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACA
AAATACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATA
TACAAATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAG
ATCAACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTAT
TTATGGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATC
TTATGGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGC
AGTTTTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGAT
TGCACGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGC
ATCATCCAATGGTGATGTTTTATTCACACCAGXXXXXXXXXXTTTAGTAGAGGATGAATA
TGATATCGGTCAAATGATTGGTGTTGATTTAACAAATGTATTGCCATCTCCTTGCGATGA
TTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAGGTGAAAAAACAACTTATAGAAC
TGTTAAACCAAATACCAATTGTTATATGACCCAACAAGCACAAATTTCAAATAAATATTG
TGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTACGAAAGTGCAGACGATAACAG
TTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTG
TCGTAAATCAATTGCTTCACAATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCA
AACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGT
TAATGCAACTTATTCACCAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGG
CAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGCTTTAGCTGGTCTTGGTGGTTT
TGGTTTCTACGTTTTTAAGAATCCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTTT
TTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGA
TGAATTTGGTATTGAAGATGATGATGCTCAAATTTTAAAGATAANATTTACAAGATAACG
AAGATTTTTAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
FILFFFTICLYKQIGGNYKMKISSILFIFIAIIVGLALSQNTIPTYKQNSINWKQFQPLY
TNKDDYVLIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFPS
YGKTQISVSNDAGQTFSTSAVFPHKVVSVSPHLDIEGLVIARSDNFILISEDFGLTWNNA
SSNGDVLFTP---

---LVEDEYDIGQMIGVDLTNVLPSPCDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQ
QAQISNKYCECTVEDFECDIGYESADDNSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPI
TEENCTPGQTYIKSKGFRRVAATQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAI
LALAGLGGFGFYVFKNPDFKQKLLKMVGFSKVGPKYSVIGIKPNSLADDEFGIEDDDAQI
LKIXFTR*rrflkk
Translated Amino Acid sequence (All Frames) 
Frame A:
iyiiflhylfi*tnwrkl*nedfiyfiyfysdycwlstftkyysnl*akqh*leaistii
yk*r*lcincrykikecfkkinkwwy*lvikct**trkyylw*crilskr**yygckfpi
lwknpnfsik*crsnifnlssfst*scisfttfry*gfsdctfr*fhfn**rfwfnmeqc
iiqw*cfiht---

---fsrg*i*yrsndwc*fnkciaislr*flnailyhslyfr*knnl*nc*tkyqllydp
tstnfk*il*mysrrf*m*ywlrkcrr*qfr**wfylwysiwifrtiels*incfticsn
h*rklytrsnlyqikrfqksrchtmcrwc*cnlftrdchvsikkffkwwqrldrwccycy
scfswswwfwflrf*esrfqtkiikngwffkgrski*cyry*tklis***iwy*r**csn
fkdxiykitkifkk

Frame B:
FILFFFTICLYKQIGGNYKMKISSILFIFIAIIVGLALSQNTIPTYKQNSINWKQFQPLY
TNKDDYVLIVDTRSKNVLKRSTNGGIDWSSNVLDKQGNIIYGNAGYYQRDDNIMVVNFPS
YGKTQISVSNDAGQTFSTSAVFPHKVVSVSPHLDIEGLVIARSDNFILISEDFGLTWNNA
SSNGDVLFTP---

---LVEDEYDIGQMIGVDLTNVLPSPCDDSSMQSYTTRCILGEKTTYRTVKPNTNCYMTQ
QAQISNKYCECTVEDFECDIGYESADDNSSDNDGSTSGIPSGSSEQLNCRKSIASQYVPI
TEENCTPGQTYIKSKGFRRVAATQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAI
LALAGLGGFGFYVFKNPDFKQKLLKMVGFSKVGPKYSVIGIKPNSLADDEFGIEDDDAQI
LKIXFTR*rrflkk

Frame C:
lyyfsslsvyinkleeiik*rfhlfylfl*rllla*hfhkilfqlisktaligsnfnhyi
qikmimy*l*iqdqrmf*kdqqmvvlighqmylinkeilfmvmqdiikemiilwl*ishl
mekpkfqyqmmqvkhfqpqqffhiklyqfhhi*ilrv**lhvpiisf*lvkilv*hgtmh
hpmvmfyshq---

---**rmnmisvk*lvli*qmychllamipqcnliplvvf*vkkqliellnqipivi*pn
khkfqinivnvqskilnvilvtkvqtitvpimmvlplvfhldlqnn*ivvnqllhnmfqs
lkkivhqvkpisnqkvseeslphnv*vvlmqlihqrlscvhqkilqvvakvgslvllllf
ll*lvlvvlvstflriqisnkny*kwlvfqrsvqnivlsvlnqth*lmmnlvlkmmmlkf
*r*xlqdnedf*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP571 (VHP571Q) /CSM/VH/VHP5-C/VHP571Q.Seq.d/                       2569   0.0
VHB825 (VHB825Q) /CSM/VH/VHB8-B/VHB825Q.Seq.d/                       1459   0.0
VFI623 (VFI623Q) /CSM/VF/VFI6-A/VFI623Q.Seq.d/                       1459   0.0
VHJ788 (VHJ788Q) /CSM/VH/VHJ7-D/VHJ788Q.Seq.d/                       1453   0.0
VHC469 (VHC469Q) /CSM/VH/VHC4-C/VHC469Q.Seq.d/                       1453   0.0
VHD665 (VHD665Q) /CSM/VH/VHD6-C/VHD665Q.Seq.d/                       1451   0.0
VHQ426 (VHQ426Q) /CSM/VH/VHQ4-B/VHQ426Q.Seq.d/                       1447   0.0
VHO888 (VHO888Q) /CSM/VH/VHO8-D/VHO888Q.Seq.d/                       1447   0.0
VHI195 (VHI195Q) /CSM/VH/VHI1-D/VHI195Q.Seq.d/                       1447   0.0
VHQ202 (VHQ202Q) /CSM/VH/VHQ2-A/VHQ202Q.Seq.d/                       1445   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446424) Dictyostelium discoideum cDNA clone:ddv62m17, 3' ...  1475   0.0    1
(BJ437433) Dictyostelium discoideum cDNA clone:ddv34b08, 3' ...  1459   0.0    1
(BJ432261) Dictyostelium discoideum cDNA clone:ddv18m06, 3' ...  1459   0.0    1
(BJ442787) Dictyostelium discoideum cDNA clone:ddv50p21, 3' ...  1453   0.0    1
(BJ437871) Dictyostelium discoideum cDNA clone:ddv35j18, 3' ...  1453   0.0    1
(BJ438791) Dictyostelium discoideum cDNA clone:ddv38a18, 3' ...  1451   0.0    1
(BJ445893) Dictyostelium discoideum cDNA clone:ddv60p22, 3' ...  1447   0.0    1
(BJ446532) Dictyostelium discoideum cDNA clone:ddv63c02, 3' ...  1445   0.0    1
(BJ438731) Dictyostelium discoideum cDNA clone:ddv38e11, 3' ...  1445   0.0    1
(BJ382707) Dictyostelium discoideum cDNA clone:ddc45k14, 3' ...  1445   0.0    1
dna update 2008.12.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159157_1(AF159157|pid:none) Hydra vulgaris head-activator bind...    77   1e-12
AB093294_1(AB093294|pid:none) Mus musculus mRNA for mKIAA1329 pr...    77   2e-12
(Q9EPR5) RecName: Full=VPS10 domain-containing receptor SorCS2; ...    77   2e-12
BC156053_1(BC156053|pid:none) Synthetic construct Homo sapiens c...    75   4e-12
AB037750_1(AB037750|pid:none) Homo sapiens mRNA for KIAA1329 pro...    75   5e-12
AF284755_1(AF284755|pid:none) Mus musculus VPS10 domain receptor...    72   6e-11
(Q9JLC4) RecName: Full=VPS10 domain-containing receptor SorCS1; ...    72   6e-11
AY099453_1(AY099453|pid:none) Homo sapiens VPS10 domain receptor...    69   3e-10
AB209142_1(AB209142|pid:none) Homo sapiens mRNA for VPS10 domain...    69   3e-10
AF284756_1(AF284756|pid:none) Homo sapiens VPS10 domain receptor...    69   3e-10
protein update 2009. 7.21
PSORT 

 psg: 1.01  gvh: 0.69  alm: 0.22  top: 0.47  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for VHP571 is pla
5' end seq. ID VHP571F
5' end seq. 
>VHP571F.Seq
ATTTATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAAT
GAAGATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACA
AAATACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATA
TACAAATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAG
ATCAACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTAT
TTATGGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATC
TTATGGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGC
AGTTTTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGAT
TGCACGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGC
ATCATCCAATGGTGATGTTTTATTCACACCAGNNNNNNNNNN
Length of 5' end seq. 582
3' end seq. ID VHP571Z
3' end seq. 
>VHP571Z.Seq
NNNNNNNNNNTTTAGTAGAGGATGAATATGATATCGGTCAAATGATTGGTGTTGATTTAA
CAAATGTATTGCCATCTCCTTGCGATGATTCCTCAATGCAATCTTATACCACTCGTTGTA
TTTTAGGTGAAAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCC
AACAAGCACAAATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATA
TTGGTTACGAAAGTGCAGACGATAACAGTTCCGATAATGATGGTTCTACCTCTGGTATTC
CATCTGGATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAA
TCACTGAAGAAAATTGTACACCAGGTCAAACCTATATCAAATCAAAAGGTTTCAGAAGAG
TCGCTGCCACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATGT
GTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCTA
TTCTTGCTTTAGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCAGATTTCA
AACAAAAATTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGTGTTATCG
GTATTAAACCAAACTCATTAGCTGATGATGAATTTGGTATTGAAGATGATGATGCTCAAA
TTTTAAAGATAANATTTACAAGATAACGAAGATTTTTAAAAAAAA
Length of 3' end seq. 765
Connected seq. ID VHP571P
Connected seq. 
>VHP571P.Seq
ATTTATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAAT
GAAGATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACA
AAATACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATA
TACAAATAAAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAG
ATCAACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTAT
TTATGGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATC
TTATGGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGC
AGTTTTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGAT
TGCACGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGC
ATCATCCAATGGTGATGTTTTATTCACACCAG----------TTTAGTAGAGGATGAATA
TGATATCGGTCAAATGATTGGTGTTGATTTAACAAATGTATTGCCATCTCCTTGCGATGA
TTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAGGTGAAAAAACAACTTATAGAAC
TGTTAAACCAAATACCAATTGTTATATGACCCAACAAGCACAAATTTCAAATAAATATTG
TGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTACGAAAGTGCAGACGATAACAG
TTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTG
TCGTAAATCAATTGCTTCACAATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCA
AACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGT
TAATGCAACTTATTCACCAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGG
CAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGCTTTAGCTGGTCTTGGTGGTTT
TGGTTTCTACGTTTTTAAGAATCCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTTT
TTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGA
TGAATTTGGTATTGAAGATGATGATGCTCAAATTTTAAAGATAANATTTACAAGATAACG
AAGATTTTTAAAAAAAA
Length of connected seq. 1327
Full length Seq ID -
Full length Seq. -
Length of full length seq. -