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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP564
Library VH
(Link to library)
Clone ID VHP564
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11242-1
Original site URL
Representative seq. ID VHP564P
(Link to Original site)
Representative DNA sequence 
>VHP564 (VHP564Q) /CSM/VH/VHP5-C/VHP564Q.Seq.d/
ATTAAAAATTTAAAGATTACTACATCACCAATGGTTATTGCTTCACCAAAAGGCAAAGAG
AAATTAATTGAATCTTTAGTTCAATCTGATGATAATAATAATAATAATAATTCTTCAGGT
GGTAGTAGTTCAACATTAATTTCGCCATTATCACCAAATAATAATAATATTCCAACTATA
ACATGTTCAAATCCAACAACAACAATAATTATTAATAAATCAATTAAAAGTACAAATTAT
ATAAATATTTCAAATAAATTAATTGTTCAATTATCAAAGAATCCAGAAATGTTAGCATCA
TTATTTGATGATACAACCAATACATTTTGGGAAGCACCATCGAATAGTTCAATAACAATT
AAAATGGAACCAGTTAGATCTATTTATGAAGTTTGTGTTTATATTGATAATAGTGCACCA
GCTAATACTGTCTCTTTTATTAATTGGAAAGCTGAAGATGAACAAAACATTTCAACCGTT
GGTAAATTTTATCTTACAATGACTTCAAGTTGGTTCACAATTCCATTCAATGGTAAACAA
TTAAAATCGGTTCAAATGAGTTTTATTXXXXXXXXXXTAAAAAGAAGTTAACTCAAGATG
TCGATGATATGTGTATGATTTGCTGGACTGAATCCATTGGTTGAATCACCNTCAATTCAA
TTGGAATGTGGCCACGTATTTCACCATGATTGTACCAAGAAATTGATTGAATCACGTTGG
AATGGTCGTATCGTTTTCAATTGTTTACAATGTCCAATCTGTAAACAAGCCATTAAACAT
CCATCATTGAAAACTTTAACCAATGAAATTGAACATATTCGTGATGAAATCATTCGTAAG
GGTAAACTTCGTATAGAATATCAAAATCTTAATAACGACCCATTGTTATTGGCTGGTGGT
AGATTCGAAGGTCGTCCAGATGATTATGTTTTGGATCAATTCTCTTATTACCTTTGTTTC
AAATGTAAACAACCTTATTTCGGTGGTCTAAATCAGTGTGCTGCTGCTGCCGCTTTACCT
TCAAACTTTAATCCTGAAGAATTGATTTGTGGTGGTTGTTCCTCTGGTGATGATCCTCAA
TCCATTTGTCCAAAACATGGTAAAGATTACCTCGAATTCAAATGTAGATACTGTTGTTCT
GTGGCAGTTTGGTTCTGTTTTGGTACCACTCACTTTTGTGATACTTGTCATGATAACAAT
GGTAGACTCACTGCTCAAACAAAGTTTGGTCAATGTCCTTTAGGTCCTGGTTCTGTAGAA
TTACCAAAAGGTCCTTGTCCTTTAGGTTTAAAGAATCATTATGAAGCTGGTAAAGAGCAA
GNCTTTAGGTTGTGGTGTTTGTCGTAATGTTAAAGAC
sequence update 2002.10.25
Translated Amino Acid sequence 
IKNLKITTSPMVIASPKGKEKLIESLVQSDDNNNNNNSSGGSSSTLISPLSPNNNNIPTI
TCSNPTTTIIINKSIKSTNYINISNKLIVQLSKNPEMLASLFDDTTNTFWEAPSNSSITI
KMEPVRSIYEVCVYIDNSAPANTVSFINWKAEDEQNISTVGKFYLTMTSSWFTIPFNGKQ
LKSVQMSFI---

---KKKLTQDVDDMCMICWTESIG*itxnsigmwprisp*lyqeid*itlewsyrfqlft
msnl*tsh*tsiienfnq*n*tys**nhs*g*tsyrisks**rpivigww*irrssr*lc
fgsilllplfqm*ttlfrwsksvccccrftfkl*s*ridlwwlflw**ssihlsktw*rl
priqm*illfcgslvlfwyhsll*yls**qw*thcsnkvwsmsfrswfcritkrslsfrf
kesl*sw*raxl*vvvfvvmlk
Translated Amino Acid sequence (All Frames) 
Frame A:
IKNLKITTSPMVIASPKGKEKLIESLVQSDDNNNNNNSSGGSSSTLISPLSPNNNNIPTI
TCSNPTTTIIINKSIKSTNYINISNKLIVQLSKNPEMLASLFDDTTNTFWEAPSNSSITI
KMEPVRSIYEVCVYIDNSAPANTVSFINWKAEDEQNISTVGKFYLTMTSSWFTIPFNGKQ
LKSVQMSFI---

---*kevnsrcr*yvydlld*ihwlnhxqfnwnvatyftmivprn*lnhvgmvvsfsivy
nvqsvnkplnihh*kl*pmklnifvmksfvrvnfv*nikilitthcywlvvdskvvqmim
fwinslitfvsnvnnlisvv*isvlllplylqtlilkn*fvvvvplvmilnpfvqnmvki
tsnsnvdtvvlwqfgsvlvpltfvilvmitmvdsllkqslvnvl*vlvl*nyqkvlvl*v
*riimklvkskxlgcgvcrnvkd

Frame B:
lki*rllhhqwlllhqkakrn*lnl*fnlmiiiiiiilqvvvvqh*frhyhqiiiifql*
hvqiqqqq*llinqlkvqii*ifqin*lfnyqriqkc*hhylmiqpihfgkhhrivq*ql
kwnqldlfmkfvfiliivhqlilsllligklkmnktfqplvnfilq*lqvgsqfhsmvnn
*nrfk*vl---

---KKKLTQDVDDMCMICWTESIG*itxnsigmwprisp*lyqeid*itlewsyrfqlft
msnl*tsh*tsiienfnq*n*tys**nhs*g*tsyrisks**rpivigww*irrssr*lc
fgsilllplfqm*ttlfrwsksvccccrftfkl*s*ridlwwlflw**ssihlsktw*rl
priqm*illfcgslvlfwyhsll*yls**qw*thcsnkvwsmsfrswfcritkrslsfrf
kesl*sw*raxl*vvvfvvmlk

Frame C:
*kfkdyyitngycftkrqrein*ifssi********ffrw**fninfaiitk***ysnyn
mfksnnnnny**in*kyklykyfk*incsiikesrnvsiii**ynqyilgstie*fnnn*
ngts*iyl*slcly***cts*yclfy*les*r*tkhfnrw*ilsyndfklvhnsiqw*ti
kigsnefy---

---krs*lkmsmicv*faglnplvespsiqlecghvfhhdctkkliesrwngrivfnclq
cpickqaikhpslktltneiehirdeiirkgklrieyqnlnndplllaggrfegrpddyv
ldqfsyylcfkckqpyfgglnqcaaaaalpsnfnpeelicggcssgddpqsicpkhgkdy
lefkcryccsvavwfcfgtthfcdtchdnngrltaqtkfgqcplgpgsvelpkgpcplgl
knhyeagkeqxfrlwcls*c*r
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP564 (VHP564Q) /CSM/VH/VHP5-C/VHP564Q.Seq.d/                       2399   0.0
AHC617 (AHC617Q) /CSM/AH/AHC6-A/AHC617Q.Seq.d/                       1497   0.0
AHG533 (AHG533Q) /CSM/AH/AHG5-B/AHG533Q.Seq.d/                       1152   0.0
AHP730 (AHP730Q) /CSM/AH/AHP7-B/AHP730Q.Seq.d/                       1140   0.0
VFM692 (VFM692Q) /CSM/VF/VFM6-D/VFM692Q.Seq.d/                       1080   0.0
VSI819 (VSI819Q) /CSM/VS/VSI8-A/VSI819Q.Seq.d/                         46   0.001
SSC552 (SSC552Q) /CSM/SS/SSC5-C/SSC552Q.Seq.d/                         44   0.006
SSA440 (SSA440Q) /CSM/SS/SSA4-B/SSA440Q.Seq.d/                         44   0.006
CHR835 (CHR835Q) /CSM/CH/CHR8-B/CHR835Q.Seq.d/                         44   0.006
AHG750 (AHG750Q) /CSM/AH/AHG7-C/AHG750Q.Seq.d/                         44   0.006
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446430) Dictyostelium discoideum cDNA clone:ddv62o15, 3' ...  1534   0.0    1
(BJ349280) Dictyostelium discoideum cDNA clone:dda36a06, 3' ...  1441   0.0    2
(BJ351667) Dictyostelium discoideum cDNA clone:dda44a09, 3' ...  1096   0.0    2
(BJ357082) Dictyostelium discoideum cDNA clone:dda62l07, 3' ...  1084   0.0    2
(BJ435340) Dictyostelium discoideum cDNA clone:ddv26g24, 3' ...  1025   0.0    2
(BJ427526) Dictyostelium discoideum cDNA clone:ddv62o15, 5' ...   581   0.0    3
(BJ338639) Dictyostelium discoideum cDNA clone:dda62l07, 5' ...   519   e-143  1
(BJ333844) Dictyostelium discoideum cDNA clone:dda44a09, 5' ...   194   6e-45  1
(BJ331762) Dictyostelium discoideum cDNA clone:dda36a06, 5' ...   113   2e-20  1
(BI073929) kt36h02.y1 Strongyloides ratti L2 pAMP1 v1 Chiape...    54   8e-05  3
dna update 2008.12.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q17551) RecName: Full=E3 ubiquitin-protein ligase rpm-1;       ...   234   1e-62
AB172863_1(AB172863|pid:none) Macaca fascicularis brain cDNA clo...   226   5e-58
AF075587_1(AF075587|pid:none) Homo sapiens protein associated wi...   226   6e-58
(O75592) RecName: Full=Probable E3 ubiquitin-protein ligase MYCB...   226   6e-58
AL359257_2(AL359257|pid:none) Human DNA sequence from clone RP11...   226   6e-58
BC037971_1(BC037971|pid:none) Homo sapiens MYC binding protein 2...   226   6e-58
AB172733_1(AB172733|pid:none) Macaca fascicularis brain cDNA clo...   224   2e-57
AF083244_1(AF083244|pid:none) Homo sapiens HSPC026 mRNA, complet...   226   2e-57
AY325887_1(AY325887|pid:none) Mus musculus highwire (Phr1) mRNA,...   223   3e-57
BC059257_1(BC059257|pid:none) Mus musculus MYC binding protein 2...   223   4e-57
protein update 2009. 7.21
PSORT 

 psg: 0.91  gvh: 0.43  alm: 0.47  top: 0.27  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHP564 is cyt
5' end seq. ID VHP564F
5' end seq. 
>VHP564F.Seq
ATTAAAAATTTAAAGATTACTACATCACCAATGGTTATTGCTTCACCAAAAGGCAAAGAG
AAATTAATTGAATCTTTAGTTCAATCTGATGATAATAATAATAATAATAATTCTTCAGGT
GGTAGTAGTTCAACATTAATTTCGCCATTATCACCAAATAATAATAATATTCCAACTATA
ACATGTTCAAATCCAACAACAACAATAATTATTAATAAATCAATTAAAAGTACAAATTAT
ATAAATATTTCAAATAAATTAATTGTTCAATTATCAAAGAATCCAGAAATGTTAGCATCA
TTATTTGATGATACAACCAATACATTTTGGGAAGCACCATCGAATAGTTCAATAACAATT
AAAATGGAACCAGTTAGATCTATTTATGAAGTTTGTGTTTATATTGATAATAGTGCACCA
GCTAATACTGTCTCTTTTATTAATTGGAAAGCTGAAGATGAACAAAACATTTCAACCGTT
GGTAAATTTTATCTTACAATGACTTCAAGTTGGTTCACAATTCCATTCAATGGTAAACAA
TTAAAATCGGTTCAAATGAGTTTTATTNNNNNNNNNN
Length of 5' end seq. 577
3' end seq. ID VHP564Z
3' end seq. 
>VHP564Z.Seq
NNNNNNNNNNTAAAAAGAAGTTAACTCAAGATGTCGATGATATGTGTATGATTTGCTGGA
CTGAATCCATTGGTTGAATCACCNTCAATTCAATTGGAATGTGGCCACGTATTTCACCAT
GATTGTACCAAGAAATTGATTGAATCACGTTGGAATGGTCGTATCGTTTTCAATTGTTTA
CAATGTCCAATCTGTAAACAAGCCATTAAACATCCATCATTGAAAACTTTAACCAATGAA
ATTGAACATATTCGTGATGAAATCATTCGTAAGGGTAAACTTCGTATAGAATATCAAAAT
CTTAATAACGACCCATTGTTATTGGCTGGTGGTAGATTCGAAGGTCGTCCAGATGATTAT
GTTTTGGATCAATTCTCTTATTACCTTTGTTTCAAATGTAAACAACCTTATTTCGGTGGT
CTAAATCAGTGTGCTGCTGCTGCCGCTTTACCTTCAAACTTTAATCCTGAAGAATTGATT
TGTGGTGGTTGTTCCTCTGGTGATGATCCTCAATCCATTTGTCCAAAACATGGTAAAGAT
TACCTCGAATTCAAATGTAGATACTGTTGTTCTGTGGCAGTTTGGTTCTGTTTTGGTACC
ACTCACTTTTGTGATACTTGTCATGATAACAATGGTAGACTCACTGCTCAAACAAAGTTT
GGTCAATGTCCTTTAGGTCCTGGTTCTGTAGAATTACCAAAAGGTCCTTGTCCTTTAGGT
TTAAAGAATCATTATGAAGCTGGTAAAGAGCAAGNCTTTAGGTTGTGGTGTTTGTCGTAA
TGTTAAAGAC
Length of 3' end seq. 790
Connected seq. ID VHP564P
Connected seq. 
>VHP564P.Seq
ATTAAAAATTTAAAGATTACTACATCACCAATGGTTATTGCTTCACCAAAAGGCAAAGAG
AAATTAATTGAATCTTTAGTTCAATCTGATGATAATAATAATAATAATAATTCTTCAGGT
GGTAGTAGTTCAACATTAATTTCGCCATTATCACCAAATAATAATAATATTCCAACTATA
ACATGTTCAAATCCAACAACAACAATAATTATTAATAAATCAATTAAAAGTACAAATTAT
ATAAATATTTCAAATAAATTAATTGTTCAATTATCAAAGAATCCAGAAATGTTAGCATCA
TTATTTGATGATACAACCAATACATTTTGGGAAGCACCATCGAATAGTTCAATAACAATT
AAAATGGAACCAGTTAGATCTATTTATGAAGTTTGTGTTTATATTGATAATAGTGCACCA
GCTAATACTGTCTCTTTTATTAATTGGAAAGCTGAAGATGAACAAAACATTTCAACCGTT
GGTAAATTTTATCTTACAATGACTTCAAGTTGGTTCACAATTCCATTCAATGGTAAACAA
TTAAAATCGGTTCAAATGAGTTTTATT----------TAAAAAGAAGTTAACTCAAGATG
TCGATGATATGTGTATGATTTGCTGGACTGAATCCATTGGTTGAATCACCNTCAATTCAA
TTGGAATGTGGCCACGTATTTCACCATGATTGTACCAAGAAATTGATTGAATCACGTTGG
AATGGTCGTATCGTTTTCAATTGTTTACAATGTCCAATCTGTAAACAAGCCATTAAACAT
CCATCATTGAAAACTTTAACCAATGAAATTGAACATATTCGTGATGAAATCATTCGTAAG
GGTAAACTTCGTATAGAATATCAAAATCTTAATAACGACCCATTGTTATTGGCTGGTGGT
AGATTCGAAGGTCGTCCAGATGATTATGTTTTGGATCAATTCTCTTATTACCTTTGTTTC
AAATGTAAACAACCTTATTTCGGTGGTCTAAATCAGTGTGCTGCTGCTGCCGCTTTACCT
TCAAACTTTAATCCTGAAGAATTGATTTGTGGTGGTTGTTCCTCTGGTGATGATCCTCAA
TCCATTTGTCCAAAACATGGTAAAGATTACCTCGAATTCAAATGTAGATACTGTTGTTCT
GTGGCAGTTTGGTTCTGTTTTGGTACCACTCACTTTTGTGATACTTGTCATGATAACAAT
GGTAGACTCACTGCTCAAACAAAGTTTGGTCAATGTCCTTTAGGTCCTGGTTCTGTAGAA
TTACCAAAAGGTCCTTGTCCTTTAGGTTTAAAGAATCATTATGAAGCTGGTAAAGAGCAA
GNCTTTAGGTTGTGGTGTTTGTCGTAATGTTAAAGAC
Length of connected seq. 1347
Full length Seq ID -
Full length Seq. -
Length of full length seq. -