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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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VHP556
Library VH
(Link to library)
Clone ID VHP556
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15761-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHP556 (VHP556Q) /CSM/VH/VHP5-C/VHP556Q.Seq.d/
AATTTTTTATTTAATTTAAACAATATATAAATCAATTAAAATAAACACTCACTCGATAGT
GTAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNTTTT
TNAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
nflfnlnni*in*NKHSLDSVKEKKKKKKKKKKKKKKKXFXKK---
Translated Amino Acid sequence (All Frames) 
Frame A:
nflfnlnni*in*NKHSLDSVKEKKKKKKKKKKKKKKKXFXKK---


Frame B:
ifyli*tiyksikinthsiv*kkkkkkkkkkkkkkkkxxfxkk---


Frame C:
ffi*fkqyinqlk*tltr*ckrkkkkkkkkkkkkkkkxfxkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD874 (VHD874Q) /CSM/VH/VHD8-D/VHD874Q.Seq.d/                        133   7e-31
VHP556 (VHP556Q) /CSM/VH/VHP5-C/VHP556Q.Seq.d/                        133   7e-31
VHO156 (VHO156Q) /CSM/VH/VHO1-C/VHO156Q.Seq.d/                        133   7e-31
VHK354 (VHK354Q) /CSM/VH/VHK3-C/VHK354Q.Seq.d/                        133   7e-31
VHJ713 (VHJ713Q) /CSM/VH/VHJ7-A/VHJ713Q.Seq.d/                        133   7e-31
VHJ609 (VHJ609Q) /CSM/VH/VHJ6-A/VHJ609Q.Seq.d/                        133   7e-31
VHJ248 (VHJ248Q) /CSM/VH/VHJ2-B/VHJ248Q.Seq.d/                        133   7e-31
VHH509 (VHH509Q) /CSM/VH/VHH5-A/VHH509Q.Seq.d/                        133   7e-31
VHG842 (VHG842Q) /CSM/VH/VHG8-B/VHG842Q.Seq.d/                        133   7e-31
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AJ430522) Dictyostelium discoideum partial pfk gene for ATP...   133   2e-27  1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...   133   2e-27  1
(BJ427525) Dictyostelium discoideum cDNA clone:ddv62o13, 5' ...   133   2e-27  1
(BJ426634) Dictyostelium discoideum cDNA clone:ddv59o13, 5' ...   133   2e-27  1
(BJ424181) Dictyostelium discoideum cDNA clone:ddv51l13, 5' ...   133   2e-27  1
(BJ423702) Dictyostelium discoideum cDNA clone:ddv50j03, 5' ...   133   2e-27  1
(BJ423663) Dictyostelium discoideum cDNA clone:ddv50a04, 5' ...   133   2e-27  1
(BJ423512) Dictyostelium discoideum cDNA clone:ddv49o12, 5' ...   133   2e-27  1
(BJ422458) Dictyostelium discoideum cDNA clone:ddv46a03, 5' ...   133   2e-27  1
(BJ421927) Dictyostelium discoideum cDNA clone:ddv44d12, 5' ...   133   2e-27  1
dna update 2008.12.19
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.306    0.119    0.313

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 69,803,946
protein update 2009. 7.21
PSORT 

 psg: 0.03  gvh: -0.29  alm: 0.99  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 1.16  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for VHP556 is nuc
5' end seq. ID VHP556F
5' end seq. 
>VHP556F.Seq
AATTTTTTATTTAATTTAAACAATATATAAATCAATTAAAATAAACACTCACTCGATAGT
GTAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNTTTT
TNAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 141
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -