NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP548
Library VH
(Link to library)
Clone ID VHP548
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15722-1
Original site URL
Representative seq. ID VHP548P
(Link to Original site)
Representative DNA sequence 
>VHP548 (VHP548Q) /CSM/VH/VHP5-B/VHP548Q.Seq.d/
AATTTAAAAAAAATAAAGGAAAAAACACACCAAAATTAAATAAGTAAGAATAAAAATGAA
ATATTTATTAGTATATTTACACATATTACTATTTTGTTTATTAAAGATCAATAGCCAAAA
GTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATCAAATTTGATGTCTTACAAAC
AAATGGTGGTATTGGTTTTCTATACTCATATTTAAGTGTTATTTTTACAACTTGTAATTA
TACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGATCATATCATTCAACTGT
TCCACGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACATAGTTATAGCAAAGA
CGGACTAATGATAACATATATATCACAGGATACAACAAATGATAATGATTGCAAAAGATA
TACAACAAATGTGATTTTTCAATGTAGACCAGATGGTGATGTATCCGATTCATTAGATGT
TGGCATCGACAATATACTTATTGATTCATGTATTGTTGAATTCACACTCTATTTACGTAC
AGTGTGTCAAACATGTCCAAACTGTTTAAAAACACATCAAACATCATGTAATGTGAAAAG
TGGTTGGTGTACTTGTGATGGTAAXXXXXXXXXXATTGTTCGACCCCCCAATGGTACTTG
GTAATAATAATACTGGTAATTGNACCATGCCAATAATGAACATTTTGGGTAATGGTTGTG
AATTTACTCGATGTCCACTCGATTGTTCGACACCAAATGGTACTTGTGATAATAATACTG
GTAATTGTACATGCCATAATGAACATTTTGGTAATTCTTGTGAATTTACTCGATGTCCAC
TCGATTGTTCGACACCAAATGGTACTTGTGATAATAATACTGGTAATTGTACATGCCATA
ATGAACATTTTGGTAATGGTTGTGAATTCACTCAATGCCCACTCTATTGTTCAACACCAA
ATGGTACTTGTGATATTAATAGTGGTATTTGTACATGTGATAATGAACATATTGGTAATG
GTTGCGAAATTAAATTTATTGAATGTAAACATAAATGTTCAACCAAACATGGAATATGTG
ATAATGATAGTGGTAATTGTAAATGTGATACTCAAACAAAAGGATTAACGTGTGAAGAAT
CAAGATTATTAATTGAATCATTAGACTCAATCAATTCAAAAGGTGGTACAATAAATATAA
TTGGTTATTTTGGAAATACAACATCATTATTAACAATTAAAATTGGTGAATCACAATGTA
AAAATATCAAAGTATTCAATGAAACAACATTAAAATGTGATATTGGTGAAGGTAAAGGTA
TTCATAATATTACAATCATTGATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCAAT
ATCTCGATGAAAAAACAAAAATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTG
TTGGTTGTGTTGTTGCTGTTTCATTAATTGGTTCTATTGCTTTTTATTATCATCACAAAA
ATAAAAAGGTTAATCTTTTCTTCTAAAAACTAAAATAAAATTTAACCATTAGGGTTTTTT
A
sequence update 2002.10.25
Translated Amino Acid sequence 
i*kk*rkkhtkik*VRIKMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNIKFDVLQT
NGGIGFLYSYLSVIFTTCNYTIPCGSNSNNVLCGSYHSTVPRKYLSLGFVNGSTHSYSKD
GLMITYISQDTTNDNDCKRYTTNVIFQCRPDGDVSDSLDVGIDNILIDSCIVEFTLYLRT
VCQTCPNCLKTHQTSCNVKSGWCTCDG---

---LFDPPMVLGNNNTGNXTMPIMNILGNGCEFTRCPLDCSTPNGTCDNNTGNCTCHNEH
FGNSCEFTRCPLDCSTPNGTCDNNTGNCTCHNEHFGNGCEFTQCPLYCSTPNGTCDINSG
ICTCDNEHIGNGCEIKFIECKHKCSTKHGICDNDSGNCKCDTQTKGLTCEESRLLIESLD
SINSKGGTINIIGYFGNTTSLLTIKIGESQCKNIKVFNETTLKCDIGEGKGIHNITIIDD
DLSFTAINKFQYLDEKTKISKISRGAIAGIVVGCVVAVSLIGSIAFYYHHKNKKVNLFF*
klk*nltirvf
Translated Amino Acid sequence (All Frames) 
Frame A:
nlkkikekthqn*isknkneifisifthitilfikdq*pkvlhl*wcwrrl*yqi*cltn
kwwywfsilifkcyfynl*lyyslw*****civwiisfncstqvsfigic*wqyt*l*qr
rtndniyitgynk***lqkiynkcdfsm*trw*cirfircwhrqyty*fmyc*ihtlfty
svsnmsklfkntsnim*cekwlvyl*w*---

---ivrppngtw***yw*lxhannehfg*wl*iysmstrlfdtkwyl***yw*lymp**t
fw*fl*iysmstrlfdtkwyl***yw*lymp**tfw*wl*ihsmptllfntkwyl*y**w
ylym***tyw*wlrn*iy*m*t*mfnqtwnm****w*l*m*ysnkrinv*rikiin*iir
lnqfkrwynkynwlfwkyniiinn*nw*itm*kyqsiq*nnikm*yw*r*rys*yynh**
*pfvhsnq*vpisr*knknlkniercncwyccwlccccfinwfycfllssqk*kg*sfll
ktkikfnh*gfl

Frame B:
i*kk*rkkhtkik*VRIKMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYNIKFDVLQT
NGGIGFLYSYLSVIFTTCNYTIPCGSNSNNVLCGSYHSTVPRKYLSLGFVNGSTHSYSKD
GLMITYISQDTTNDNDCKRYTTNVIFQCRPDGDVSDSLDVGIDNILIDSCIVEFTLYLRT
VCQTCPNCLKTHQTSCNVKSGWCTCDG---

---LFDPPMVLGNNNTGNXTMPIMNILGNGCEFTRCPLDCSTPNGTCDNNTGNCTCHNEH
FGNSCEFTRCPLDCSTPNGTCDNNTGNCTCHNEHFGNGCEFTQCPLYCSTPNGTCDINSG
ICTCDNEHIGNGCEIKFIECKHKCSTKHGICDNDSGNCKCDTQTKGLTCEESRLLIESLD
SINSKGGTINIIGYFGNTTSLLTIKIGESQCKNIKVFNETTLKCDIGEGKGIHNITIIDD
DLSFTAINKFQYLDEKTKISKISRGAIAGIVVGCVVAVSLIGSIAFYYHHKNKKVNLFF*
klk*nltirvf

Frame C:
fkknkgkntpklnk*e*k*niy*yiytyyyfvy*rsiaksialivvlekiiisnlmsykq
mvvlvfythi*vlflqlviilflvvvivimycvdhiiqlfhasifhwdllmavhiviakt
d***hiyhriqqmimiakdiqqm*ffnvdqmvmypih*mlastiyllihvllnshsiyvq
cvkhvqtv*khikhhvm*kvvgvlvmv---

---cstpqwylviiilvixpcq**tfwvmvvnlldvhsivrhqmvlviiilvivhaimni
lvilvnlldvhsivrhqmvlviiilvivhaimnilvmvvnslnahsivqhqmvlvilivv
fvhvimnilvmvaklnllnvninvqpnmeyvimivvivnvilkqkd*rvknqdy*lnh*t
qsiqkvvq*i*lvileiqhhy*qlklvnhnvkiskysmkqh*nvilvkvkvfiilqslmm
tfrsqqsissnismkkqksqkyrevqllvlllvvlllfh*lvlllfiiitkikrlifssk
n*nki*plgff
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP548 (VHP548Q) /CSM/VH/VHP5-B/VHP548Q.Seq.d/                       2567   0.0
VHQ484 (VHQ484Q) /CSM/VH/VHQ4-D/VHQ484Q.Seq.d/                       1439   0.0
VHP522 (VHP522Q) /CSM/VH/VHP5-A/VHP522Q.Seq.d/                       1439   0.0
VHB393 (VHB393Q) /CSM/VH/VHB3-D/VHB393Q.Seq.d/                       1429   0.0
VHA815 (VHA815Q) /CSM/VH/VHA8-A/VHA815Q.Seq.d/                       1415   0.0
AHL833 (AHL833Q) /CSM/AH/AHL8-B/AHL833Q.Seq.d/                       1396   0.0
AHH863 (AHH863Q) /CSM/AH/AHH8-C/AHH863Q.Seq.d/                       1396   0.0
VHO542 (VHO542Q) /CSM/VH/VHO5-B/VHO542Q.Seq.d/                       1394   0.0
VHA893 (VHA893Q) /CSM/VH/VHA8-D/VHA893Q.Seq.d/                       1394   0.0
VHP265 (VHP265Q) /CSM/VH/VHP2-C/VHP265Q.Seq.d/                       1392   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446355) Dictyostelium discoideum cDNA clone:ddv62o11, 3' ...  1491   0.0    2
(BJ437312) Dictyostelium discoideum cDNA clone:ddv33j23, 3' ...  1382   0.0    3
(BJ445477) Dictyostelium discoideum cDNA clone:ddv59g17, 3' ...  1354   0.0    2
(AU284609) Dictyostelium discoideum gamete cDNA clone:FC-BE2...  1352   0.0    3
(BJ446789) Dictyostelium discoideum cDNA clone:ddv63h22, 3' ...  1352   0.0    4
(BJ446619) Dictyostelium discoideum cDNA clone:ddv63e11, 3' ...  1352   0.0    3
(BJ446052) Dictyostelium discoideum cDNA clone:ddv61a18, 3' ...  1352   0.0    5
(BJ443076) Dictyostelium discoideum cDNA clone:ddv51g23, 3' ...  1352   0.0    4
(BJ441604) Dictyostelium discoideum cDNA clone:ddv47a11, 3' ...  1352   0.0    4
(BJ441328) Dictyostelium discoideum cDNA clone:ddv46j09, 3' ...  1352   0.0    3
dna update 2008.12.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...   125   3e-27
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...   108   4e-22
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...    97   2e-18
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom...    95   6e-18
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...    94   2e-17
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...    93   2e-17
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...    90   2e-16
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom...    90   3e-16
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...    89   6e-16
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...    86   4e-15
protein update 2009. 7.21
PSORT 

 psg: 0.93  gvh: 0.70  alm: 0.19  top: 0.40  tms: 0.07  mit: 0.32  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.77  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for VHP548 is pla
5' end seq. ID VHP548F
5' end seq. 
>VHP548F.Seq
AATTTAAAAAAAATAAAGGAAAAAACACACCAAAATTAAATAAGTAAGAATAAAAATGAA
ATATTTATTAGTATATTTACACATATTACTATTTTGTTTATTAAAGATCAATAGCCAAAA
GTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATCAAATTTGATGTCTTACAAAC
AAATGGTGGTATTGGTTTTCTATACTCATATTTAAGTGTTATTTTTACAACTTGTAATTA
TACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGATCATATCATTCAACTGT
TCCACGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACATAGTTATAGCAAAGA
CGGACTAATGATAACATATATATCACAGGATACAACAAATGATAATGATTGCAAAAGATA
TACAACAAATGTGATTTTTCAATGTAGACCAGATGGTGATGTATCCGATTCATTAGATGT
TGGCATCGACAATATACTTATTGATTCATGTATTGTTGAATTCACACTCTATTTACGTAC
AGTGTGTCAAACATGTCCAAACTGTTTAAAAACACATCAAACATCATGTAATGTGAAAAG
TGGTTGGTGTACTTGTGATGGTAANNNNNNNNNN
Length of 5' end seq. 634
3' end seq. ID VHP548Z
3' end seq. 
>VHP548Z.Seq
NNNNNNNNNNATTGTTCGACCCCCCAATGGTACTTGGTAATAATAATACTGGTAATTGNA
CCATGCCAATAATGAACATTTTGGGTAATGGTTGTGAATTTACTCGATGTCCACTCGATT
GTTCGACACCAAATGGTACTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAAC
ATTTTGGTAATTCTTGTGAATTTACTCGATGTCCACTCGATTGTTCGACACCAAATGGTA
CTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACATTTTGGTAATGGTTGTG
AATTCACTCAATGCCCACTCTATTGTTCAACACCAAATGGTACTTGTGATATTAATAGTG
GTATTTGTACATGTGATAATGAACATATTGGTAATGGTTGCGAAATTAAATTTATTGAAT
GTAAACATAAATGTTCAACCAAACATGGAATATGTGATAATGATAGTGGTAATTGTAAAT
GTGATACTCAAACAAAAGGATTAACGTGTGAAGAATCAAGATTATTAATTGAATCATTAG
ACTCAATCAATTCAAAAGGTGGTACAATAAATATAATTGGTTATTTTGGAAATACAACAT
CATTATTAACAATTAAAATTGGTGAATCACAATGTAAAAATATCAAAGTATTCAATGAAA
CAACATTAAAATGTGATATTGGTGAAGGTAAAGGTATTCATAATATTACAATCATTGATG
ATGACCTTTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATGAAAAAACAAAAATCT
CAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGTTGTTGCTGTTTCAT
TAATTGGTTCTATTGCTTTTTATTATCATCACAAAAATAAAAAGGTTAATCTTTTCTTCT
AAAAACTAAAATAAAATTTAACCATTAGGGTTTTTTA
Length of 3' end seq. 937
Connected seq. ID VHP548P
Connected seq. 
>VHP548P.Seq
AATTTAAAAAAAATAAAGGAAAAAACACACCAAAATTAAATAAGTAAGAATAAAAATGAA
ATATTTATTAGTATATTTACACATATTACTATTTTGTTTATTAAAGATCAATAGCCAAAA
GTATTGCACTTATAGTGGTGTTGGAGAAGATTATAATATCAAATTTGATGTCTTACAAAC
AAATGGTGGTATTGGTTTTCTATACTCATATTTAAGTGTTATTTTTACAACTTGTAATTA
TACTATTCCTTGTGGTAGTAATAGTAATAATGTATTGTGTGGATCATATCATTCAACTGT
TCCACGCAAGTATCTTTCATTGGGATTTGTTAATGGCAGTACACATAGTTATAGCAAAGA
CGGACTAATGATAACATATATATCACAGGATACAACAAATGATAATGATTGCAAAAGATA
TACAACAAATGTGATTTTTCAATGTAGACCAGATGGTGATGTATCCGATTCATTAGATGT
TGGCATCGACAATATACTTATTGATTCATGTATTGTTGAATTCACACTCTATTTACGTAC
AGTGTGTCAAACATGTCCAAACTGTTTAAAAACACATCAAACATCATGTAATGTGAAAAG
TGGTTGGTGTACTTGTGATGGTAA----------ATTGTTCGACCCCCCAATGGTACTTG
GTAATAATAATACTGGTAATTGNACCATGCCAATAATGAACATTTTGGGTAATGGTTGTG
AATTTACTCGATGTCCACTCGATTGTTCGACACCAAATGGTACTTGTGATAATAATACTG
GTAATTGTACATGCCATAATGAACATTTTGGTAATTCTTGTGAATTTACTCGATGTCCAC
TCGATTGTTCGACACCAAATGGTACTTGTGATAATAATACTGGTAATTGTACATGCCATA
ATGAACATTTTGGTAATGGTTGTGAATTCACTCAATGCCCACTCTATTGTTCAACACCAA
ATGGTACTTGTGATATTAATAGTGGTATTTGTACATGTGATAATGAACATATTGGTAATG
GTTGCGAAATTAAATTTATTGAATGTAAACATAAATGTTCAACCAAACATGGAATATGTG
ATAATGATAGTGGTAATTGTAAATGTGATACTCAAACAAAAGGATTAACGTGTGAAGAAT
CAAGATTATTAATTGAATCATTAGACTCAATCAATTCAAAAGGTGGTACAATAAATATAA
TTGGTTATTTTGGAAATACAACATCATTATTAACAATTAAAATTGGTGAATCACAATGTA
AAAATATCAAAGTATTCAATGAAACAACATTAAAATGTGATATTGGTGAAGGTAAAGGTA
TTCATAATATTACAATCATTGATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCAAT
ATCTCGATGAAAAAACAAAAATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTG
TTGGTTGTGTTGTTGCTGTTTCATTAATTGGTTCTATTGCTTTTTATTATCATCACAAAA
ATAAAAAGGTTAATCTTTTCTTCTAAAAACTAAAATAAAATTTAACCATTAGGGTTTTTT
A
Length of connected seq. 1551
Full length Seq ID -
Full length Seq. -
Length of full length seq. -