VHP542
Library VH
(Link to library)
Clone ID VHP542
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHP542P
(Link to Original site)
Representative DNA sequence
>VHP542 (VHP542Q) /CSM/VH/VHP5-B/VHP542Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCXXXXXXXXXXTGGGATAAAAATGA
TGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGT
CACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATG
GGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTA
TGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGC
TCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTNTNTTAGAACCAATNTA
CTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCG
TCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAA
AGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGC
CGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCGACAA
AGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGA
AATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGT
TTTCAAAAATAGGAATCAAATCTAAAAAAAATTTTAAAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVGNTEDKEFGDVTVS---

---WDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENM
RGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTXLEPXYLVEITAPENAIG
GIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHW
ASIGVVDKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*ti*val*vfknrnqi*kkf*
kk


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklislsvellnpsmsllvtlkirnsvmslyp---

---WDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENM
RGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTXLEPXYLVEITAPENAIG
GIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHW
ASIGVVDKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*ti*val*vfknrnqi*kkf*
kk

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*
rslslfp*sy*irqchcw*h*r*gir*chci---

---gikmmp*tfglsvqkvtvpisssmspkvfni*mklkilslvlsngppkkvlfvmkt*
evsvsifmmspstlmpstevvvkssqllvvysmlln*lppqlx*nqxt**kllpqktllv
vftlysivvevlllvknvvsvphyslskliyqy*npsvspliyvptlpvklshnvssiig
lqlvlstkirkplksl*pperekv*pqksqiltnstknskqfkshfefskigikskknfk
kk

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVGNTEDKEFGDVTVS---

---g*k*chehlvfrsrr*rcqsprqchqrcsife*n*rffrwcfpmghqrrccl**khe
rypfqsl*chpph*chpqrwwsnhpncssctlcc*inclpnxxrtnxlsrnycprkryww
yllctqss*rycyw*rtsyrfpiilcqssftsirilrfhr*ftfphcrssfptmclrslg
fnwccrqr*esh*srfshqkekrfsprnprs*qiprktlnnlsrtlsfqk*esnlkkilk
kk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP542 (VHP542Q) /CSM/VH/VHP5-B/VHP542Q.Seq.d/ 2545 0.0
VHP776 (VHP776Q) /CSM/VH/VHP7-D/VHP776Q.Seq.d/ 1350 0.0
VHB458 (VHB458Q) /CSM/VH/VHB4-C/VHB458Q.Seq.d/ 1350 0.0
VHA267 (VHA267Q) /CSM/VH/VHA2-C/VHA267Q.Seq.d/ 1350 0.0
VHP832 (VHP832Q) /CSM/VH/VHP8-B/VHP832Q.Seq.d/ 1348 0.0
VHH827 (VHH827Q) /CSM/VH/VHH8-B/VHH827Q.Seq.d/ 1348 0.0
VHE120 (VHE120Q) /CSM/VH/VHE1-A/VHE120Q.Seq.d/ 1348 0.0
VHP487 (VHP487Q) /CSM/VH/VHP4-D/VHP487Q.Seq.d/ 1344 0.0
VHE171 (VHE171Q) /CSM/VH/VHE1-C/VHE171Q.Seq.d/ 1344 0.0
VHB371 (VHB371Q) /CSM/VH/VHB3-C/VHB371Q.Seq.d/ 1344 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446289) Dictyostelium discoideum cDNA clone:ddv62c11, 3' ... 1364 0.0 1
(BJ446473) Dictyostelium discoideum cDNA clone:ddv62h19, 3' ... 1350 0.0 1
(BJ437205) Dictyostelium discoideum cDNA clone:ddv33d16, 3' ... 1350 0.0 1
(BJ436566) Dictyostelium discoideum cDNA clone:ddv31e18, 3' ... 1350 0.0 1
(BJ446358) Dictyostelium discoideum cDNA clone:ddv62p08, 3' ... 1348 0.0 1
(BJ441306) Dictyostelium discoideum cDNA clone:ddv46f08, 3' ... 1348 0.0 1
(BJ438985) Dictyostelium discoideum cDNA clone:ddv39g05, 3' ... 1348 0.0 1
(BJ436477) Dictyostelium discoideum cDNA clone:ddv31e10, 3' ... 1348 0.0 1
(BJ446725) Dictyostelium discoideum cDNA clone:ddv63k17, 3' ... 1344 0.0 1
(BJ446187) Dictyostelium discoideum cDNA clone:ddv61n22, 3' ... 1344 0.0 1
dna update 2008.12.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 280 9e-74
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 279 1e-73
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 278 3e-73
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 278 3e-73
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 278 3e-73
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 278 4e-73
BT072304_1(BT072304|pid:none) Salmo salar clone ssal-rgf-520-280... 277 7e-73
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 276 1e-72
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 276 1e-72
AK298498_1(AK298498|pid:none) Homo sapiens cDNA FLJ56548 complet... 276 1e-72
protein update 2009. 7.21
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHP542 is cyt

5' end seq. ID VHP542F
5' end seq.
>VHP542F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCNNNNNNNNNN
Length of 5' end seq. 646
3' end seq. ID VHP542Z
3' end seq.
>VHP542Z.Seq
NNNNNNNNNNTGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAA
CGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGA
TTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACAT
GAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGG
TGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTC
CCCAACTNTNTTAGAACCAATNTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGG
TGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTAT
CGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCAC
CGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTG
GGCTTCAATTGGTGTTGTCGACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAG
AAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTA
AACAATTTAAGTCGCACTTTGAGTTTTCAAAAATAGGAATCAAATCTAAAAAAAATTTTA
AAAAAAAAA
Length of 3' end seq. 729
Connected seq. ID VHP542P
Connected seq.
>VHP542P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCC----------TGGGATAAAAATGA
TGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGT
CACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATG
GGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTA
TGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGC
TCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTNTNTTAGAACCAATNTA
CTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCG
TCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAA
AGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGC
CGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCGACAA
AGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGA
AATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGT
TTTCAAAAATAGGAATCAAATCTAAAAAAAATTTTAAAAAAAAAA
Length of connected seq. 1355
Full length Seq ID -
Full length Seq. -
Length of full length seq. -