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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP539
Library VH
(Link to library)
Clone ID VHP539
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16438-1
Original site URL
Representative seq. ID VHP539P
(Link to Original site)
Representative DNA sequence 
>VHP539 (VHP539Q) /CSM/VH/VHP5-B/VHP539Q.Seq.d/
ATATACATAATTAAAATTTCATACAATCATGGTAGCAATTAATTCAGTTTCTAATTACCT
ATCATTATTGGATGAAGATCAATTAGAATTGAAATCATATTCATTAGAAAAATTAGATTC
ATGTGTTGATGAATTTTGGTCAGAAATTGCATCATCTTCAATCGATAAAATAAAATCATT
ATCAGTCAATAAACAATTTCCAAAACATGAACTTGCATCATTAGTTTTATCAAAAGTATA
TTACAATTTAAGTGATTTCCCAAATTCAATGGAATATGCGTTATCAGCTGGTTCTTTATT
TAATGTTTTATCAAAGAGTGAATACATTGAAACACTTTTATATAAATTTATTGATGAATA
TATTAAATTAAGAACATCCACAAATAAAGACACTGTTATCAATCCACATCTCGAATCAAT
TGTAATGGGAATGTTTGATAGATGTTTCAAGGAAGGATCATATAAACAGGCATTAGGTAT
TGCTATTGAAGCAAGAAGATTAGATATAATTGAAAAAGCAATTTCACAATCTGGTAATGT
AAATAGTATGCTCTCTTATTGTCTTCACATTTGTAATGTTTCAGTAAACAATCGTCATTT
CCGTCATAGTGTTTTAGGTATTTTGGTTAATCTTCATTTAGXXXXXXXXXXTTGGTGCTG
TATTAGCATTTGGTGTCATTGATGCCGGTGGTAGAAACTNTACCCATTCAATTACATTCA
CCAAGTGGTCACAAGAATATGAATGCTATCGTTGGTATTGCTGGTTTCCTTCAATTTTGG
TATTGGTTCCCAATGACTCACTTTATGGGCTTAGCGTTAACTCCAACCTCTATCATTGGT
CTCAACAAAAACTTGGAAATGCCAGTTTTCACTTTCAAATCCAATTGCAGACCATCACTC
TTTGCTTATCCACCTGAAACCAAACCATCCACCACAAGCTCAACCAATAAAATTGAAACA
GCCATCCTCTCCTACAGTAGAAAGAATAAACTTCAAAGTTCTCGTTCCGCTATGAATATT
GATCAAGATGTTGAAAAGAAAGAAAAAGAGGAGAAAGAAGCCAAAGAAAAAGAAGCCAAA
GAAAAGGAAGAAAAAGAAGCTGCCAAAGCCGAAGAAAAAGAACCACTCTTTGAAAGAAAA
TCAAACCCTGCTCGTATCGTACCAAGACAATTACAATATGTTCAATTTGATGATGCTCGT
TATCAACCAATTAAAAAGAGTCCTGCCATTGGTATCGTTATGTTGAGAGATTTAACTCCA
AATGAACCAGAACAATTGGTTGTAAAAGAAAAACCAGAAACTAAACAAGAAACTGTTGGA
AATCAATCTGGTACTGCTACTGCTACTGCTTCACTTCCAAATGCTACCACTACAACTTCT
CCAACTCTTCCAGAACCTTCAACTCCAGAACCATTTGAATTTACTGAATAAAACNCTTTT
TATAAAAAAATTTAATAAATATA
sequence update 2002.10.25
Translated Amino Acid sequence 
yt*LKFHTIMVAINSVSNYLSLLDEDQLELKSYSLEKLDSCVDEFWSEIASSSIDKIKSL
SVNKQFPKHELASLVLSKVYYNLSDFPNSMEYALSAGSLFNVLSKSEYIETLLYKFIDEY
IKLRTSTNKDTVINPHLESIVMGMFDRCFKEGSYKQALGIAIEARRLDIIEKAISQSGNV
NSMLSYCLHICNVSVNNRHFRHSVLGILVNLHL---

---GAVLAFGVIDAGGRNXTHSITFTKWSQEYECYRWYCWFPSILVLVPNDSLYGLSVNS
NLYHWSQQKLGNASFHFQIQLQTITLCLST*nqtihhklnq*n*nshpllq*ke*tskfs
fryey*src*kerkrgersqrkrsqrkgrkrscqsrrkrttl*kkikpcsyrtktitics
i**cslstn*keschwyryverfnsk*trtigckrktrn*trncwksiwycycycftskc
yhynfsnssrtfnsrti*iy*ikxfl*knlini
Translated Amino Acid sequence (All Frames) 
Frame A:
iyiikisynhgsn*fsf*lpiiig*rsirieiifirkirfmc**ilvrnciifnr*nkii
isq*tiskt*tciisfiksilqfk*fpkfngicviswffi*cfike*ih*ntfi*iy**i
y*iknihk*rhcyqstsrincngnv**mfqgrii*tgirycy*skkiryn*ksnftiw*c
k*yalllsshl*cfskqssfps*cfryfg*ssf---

---lvly*hlvslmpvvetxpiqlhspsghknmnaivgiagflqfwywfpmthfmglalt
ptsiiglnknlempvftfksncrpslfayppetkpsttsstnkietailsysrknklqss
rsamnidqdvekkekeekeakekeakekeekeaakaeekeplferksnparivprqlqyv
qfddaryqpikkspaigivmlrdltpnepeqlvvkekpetkqetvgnqsgtatataslpn
attttsptlpepstpepfefte*nxfykki**i

Frame B:
yt*LKFHTIMVAINSVSNYLSLLDEDQLELKSYSLEKLDSCVDEFWSEIASSSIDKIKSL
SVNKQFPKHELASLVLSKVYYNLSDFPNSMEYALSAGSLFNVLSKSEYIETLLYKFIDEY
IKLRTSTNKDTVINPHLESIVMGMFDRCFKEGSYKQALGIAIEARRLDIIEKAISQSGNV
NSMLSYCLHICNVSVNNRHFRHSVLGILVNLHL---

---wccisiwch*crw*klypfnyihqvvtri*mlslvllvsfnfgigsq*ltlwa*r*l
qplslvstktwkcqfslsnpiadhhsllihlkpnhppqaqpiklkqpssptverinfkvl
vpl*ilikmlkrkkkrrkkpkkkkpkkrkkkklpkpkkknhslkenqtllvsyqdnynmf
nlmmlvinqlkrvlplvslc*ei*lqmnqnnwl*kknqklnkklleinlvllllllhfqm
lplqllqlfqnlqlqnhlnllnktlfikkfnky

Frame C:
ihn*nfiqsw*qliqflityhywmkin*n*nhih*kn*ihvlmnfgqklhhlqsik*nhy
qsinnfqnmnlhh*fyqkyiti*visqiqwnmryqlvlylmfyqrvntlkhfyinllmni
ln*ehpqiktllsihisnql*weclidvsrkdhinrh*vlllkqed*i*lkkqfhnlvm*
ivcslivftfvmfq*tivisvivf*vfwlifi*---

---GAVLAFGVIDAGGRNXTHSITFTKWSQEYECYRWYCWFPSILVLVPNDSLYGLSVNS
NLYHWSQQKLGNASFHFQIQLQTITLCLST*nqtihhklnq*n*nshpllq*ke*tskfs
fryey*src*kerkrgersqrkrsqrkgrkrscqsrrkrttl*kkikpcsyrtktitics
i**cslstn*keschwyryverfnsk*trtigckrktrn*trncwksiwycycycftskc
yhynfsnssrtfnsrti*iy*ikxfl*knlini
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP539 (VHP539Q) /CSM/VH/VHP5-B/VHP539Q.Seq.d/                       1980   0.0
VHM583 (VHM583Q) /CSM/VH/VHM5-D/VHM583Q.Seq.d/                       1271   0.0
CHS110 (CHS110Q) /CSM/CH/CHS1-A/CHS110Q.Seq.d/                       1271   0.0
AHB468 (AHB468Q) /CSM/AH/AHB4-C/AHB468Q.Seq.d/                       1271   0.0
AHB222 (AHB222Q) /CSM/AH/AHB2-A/AHB222Q.Seq.d/                       1269   0.0
SHG852 (SHG852Q) /CSM/SH/SHG8-C/SHG852Q.Seq.d/                       1267   0.0
AHG821 (AHG821Q) /CSM/AH/AHG8-A/AHG821Q.Seq.d/                       1267   0.0
AHJ432 (AHJ432Q) /CSM/AH/AHJ4-B/AHJ432Q.Seq.d/                       1265   0.0
AHI748 (AHI748Q) /CSM/AH/AHI7-B/AHI748Q.Seq.d/                       1265   0.0
AHG895 (AHG895Q) /CSM/AH/AHG8-D/AHG895Q.Seq.d/                       1259   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ427437) Dictyostelium discoideum cDNA clone:ddv62m09, 5' ...  1269   0.0    1
(BJ425771) Dictyostelium discoideum cDNA clone:ddv56e21, 5' ...  1269   0.0    1
(BJ371441) Dictyostelium discoideum cDNA clone:ddc58c03, 5' ...  1269   0.0    1
(BJ331018) Dictyostelium discoideum cDNA clone:dda33h18, 5' ...  1269   0.0    1
(BJ330896) Dictyostelium discoideum cDNA clone:dda33k06, 5' ...  1269   0.0    1
(BJ333814) Dictyostelium discoideum cDNA clone:dda44j06, 5' ...  1267   0.0    1
(BJ395086) Dictyostelium discoideum cDNA clone:dds37h14, 5' ...  1265   0.0    1
(BJ335240) Dictyostelium discoideum cDNA clone:dda49p08, 5' ...  1265   0.0    1
(BJ334973) Dictyostelium discoideum cDNA clone:dda48p11, 5' ...  1265   0.0    1
(BJ334048) Dictyostelium discoideum cDNA clone:dda44n24, 5' ...  1259   0.0    1
dna update 2008.12.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC045463_1(BC045463|pid:none) Danio rerio proteasome (prosome, m...   179   3e-43
BX571973_4(BX571973|pid:none) Zebrafish DNA sequence from clone ...   176   3e-42
BC100172_1(BC100172|pid:none) Xenopus laevis hypothetical protei...   174   1e-41
CR762098_1(CR762098|pid:none) Xenopus tropicalis finished cDNA, ...   173   1e-41
BC047897_1(BC047897|pid:none) Homo sapiens proteasome (prosome, ...   173   1e-41
(Q8IV79) RecName: Full=26S proteasome non-ATPase regulatory subu...   173   1e-41
BC001053_1(BC001053|pid:none) Homo sapiens proteasome (prosome, ...   173   1e-41
BC039845_1(BC039845|pid:none) Homo sapiens, Similar to proteasom...   173   1e-41
BC064398_1(BC064398|pid:none) Homo sapiens proteasome (prosome, ...   173   1e-41
BC014013_1(BC014013|pid:none) Homo sapiens proteasome (prosome, ...   173   1e-41
protein update 2009. 7.21
PSORT 

 psg: 0.92  gvh: 0.35  alm: 0.28  top: 0.40  tms: 0.07  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.05  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: nuclear
	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VHP539 is nuc
5' end seq. ID VHP539F
5' end seq. 
>VHP539F.Seq
ATATACATAATTAAAATTTCATACAATCATGGTAGCAATTAATTCAGTTTCTAATTACCT
ATCATTATTGGATGAAGATCAATTAGAATTGAAATCATATTCATTAGAAAAATTAGATTC
ATGTGTTGATGAATTTTGGTCAGAAATTGCATCATCTTCAATCGATAAAATAAAATCATT
ATCAGTCAATAAACAATTTCCAAAACATGAACTTGCATCATTAGTTTTATCAAAAGTATA
TTACAATTTAAGTGATTTCCCAAATTCAATGGAATATGCGTTATCAGCTGGTTCTTTATT
TAATGTTTTATCAAAGAGTGAATACATTGAAACACTTTTATATAAATTTATTGATGAATA
TATTAAATTAAGAACATCCACAAATAAAGACACTGTTATCAATCCACATCTCGAATCAAT
TGTAATGGGAATGTTTGATAGATGTTTCAAGGAAGGATCATATAAACAGGCATTAGGTAT
TGCTATTGAAGCAAGAAGATTAGATATAATTGAAAAAGCAATTTCACAATCTGGTAATGT
AAATAGTATGCTCTCTTATTGTCTTCACATTTGTAATGTTTCAGTAAACAATCGTCATTT
CCGTCATAGTGTTTTAGGTATTTTGGTTAATCTTCATTTAGNNNNNNNNNN
Length of 5' end seq. 651
3' end seq. ID VHP539Z
3' end seq. 
>VHP539Z.Seq
NNNNNNNNNNTTGGTGCTGTATTAGCATTTGGTGTCATTGATGCCGGTGGTAGAAACTNT
ACCCATTCAATTACATTCACCAAGTGGTCACAAGAATATGAATGCTATCGTTGGTATTGC
TGGTTTCCTTCAATTTTGGTATTGGTTCCCAATGACTCACTTTATGGGCTTAGCGTTAAC
TCCAACCTCTATCATTGGTCTCAACAAAAACTTGGAAATGCCAGTTTTCACTTTCAAATC
CAATTGCAGACCATCACTCTTTGCTTATCCACCTGAAACCAAACCATCCACCACAAGCTC
AACCAATAAAATTGAAACAGCCATCCTCTCCTACAGTAGAAAGAATAAACTTCAAAGTTC
TCGTTCCGCTATGAATATTGATCAAGATGTTGAAAAGAAAGAAAAAGAGGAGAAAGAAGC
CAAAGAAAAAGAAGCCAAAGAAAAGGAAGAAAAAGAAGCTGCCAAAGCCGAAGAAAAAGA
ACCACTCTTTGAAAGAAAATCAAACCCTGCTCGTATCGTACCAAGACAATTACAATATGT
TCAATTTGATGATGCTCGTTATCAACCAATTAAAAAGAGTCCTGCCATTGGTATCGTTAT
GTTGAGAGATTTAACTCCAAATGAACCAGAACAATTGGTTGTAAAAGAAAAACCAGAAAC
TAAACAAGAAACTGTTGGAAATCAATCTGGTACTGCTACTGCTACTGCTTCACTTCCAAA
TGCTACCACTACAACTTCTCCAACTCTTCCAGAACCTTCAACTCCAGAACCATTTGAATT
TACTGAATAAAACNCTTTTTATAAAAAAATTTAATAAATATA
Length of 3' end seq. 822
Connected seq. ID VHP539P
Connected seq. 
>VHP539P.Seq
ATATACATAATTAAAATTTCATACAATCATGGTAGCAATTAATTCAGTTTCTAATTACCT
ATCATTATTGGATGAAGATCAATTAGAATTGAAATCATATTCATTAGAAAAATTAGATTC
ATGTGTTGATGAATTTTGGTCAGAAATTGCATCATCTTCAATCGATAAAATAAAATCATT
ATCAGTCAATAAACAATTTCCAAAACATGAACTTGCATCATTAGTTTTATCAAAAGTATA
TTACAATTTAAGTGATTTCCCAAATTCAATGGAATATGCGTTATCAGCTGGTTCTTTATT
TAATGTTTTATCAAAGAGTGAATACATTGAAACACTTTTATATAAATTTATTGATGAATA
TATTAAATTAAGAACATCCACAAATAAAGACACTGTTATCAATCCACATCTCGAATCAAT
TGTAATGGGAATGTTTGATAGATGTTTCAAGGAAGGATCATATAAACAGGCATTAGGTAT
TGCTATTGAAGCAAGAAGATTAGATATAATTGAAAAAGCAATTTCACAATCTGGTAATGT
AAATAGTATGCTCTCTTATTGTCTTCACATTTGTAATGTTTCAGTAAACAATCGTCATTT
CCGTCATAGTGTTTTAGGTATTTTGGTTAATCTTCATTTAG----------TTGGTGCTG
TATTAGCATTTGGTGTCATTGATGCCGGTGGTAGAAACTNTACCCATTCAATTACATTCA
CCAAGTGGTCACAAGAATATGAATGCTATCGTTGGTATTGCTGGTTTCCTTCAATTTTGG
TATTGGTTCCCAATGACTCACTTTATGGGCTTAGCGTTAACTCCAACCTCTATCATTGGT
CTCAACAAAAACTTGGAAATGCCAGTTTTCACTTTCAAATCCAATTGCAGACCATCACTC
TTTGCTTATCCACCTGAAACCAAACCATCCACCACAAGCTCAACCAATAAAATTGAAACA
GCCATCCTCTCCTACAGTAGAAAGAATAAACTTCAAAGTTCTCGTTCCGCTATGAATATT
GATCAAGATGTTGAAAAGAAAGAAAAAGAGGAGAAAGAAGCCAAAGAAAAAGAAGCCAAA
GAAAAGGAAGAAAAAGAAGCTGCCAAAGCCGAAGAAAAAGAACCACTCTTTGAAAGAAAA
TCAAACCCTGCTCGTATCGTACCAAGACAATTACAATATGTTCAATTTGATGATGCTCGT
TATCAACCAATTAAAAAGAGTCCTGCCATTGGTATCGTTATGTTGAGAGATTTAACTCCA
AATGAACCAGAACAATTGGTTGTAAAAGAAAAACCAGAAACTAAACAAGAAACTGTTGGA
AATCAATCTGGTACTGCTACTGCTACTGCTTCACTTCCAAATGCTACCACTACAACTTCT
CCAACTCTTCCAGAACCTTCAACTCCAGAACCATTTGAATTTACTGAATAAAACNCTTTT
TATAAAAAAATTTAATAAATATA
Length of connected seq. 1453
Full length Seq ID -
Full length Seq. -
Length of full length seq. -