VHP538
Library VH
(Link to library)
Clone ID VHP538
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15033-1
Original site URL
Representative seq. ID VHP538P
(Link to Original site)
Representative DNA sequence
>VHP538 (VHP538Q) /CSM/VH/VHP5-B/VHP538Q.Seq.d/
ATAGTTACAAATAAATAATGAAATTGTTATTATATTTACTTTCATTATTTATTATTTTAA
TATCCCAAAACCTAGTTAATTGTGAAAATTATTATTTAACAGAATGGGATATATTAGCAC
CATTTCCAAGTGCACCAAGAGAAGATGTTGATGTATTAAATTGTTATGGTGGAATTGATA
ATATACCAATAGGTGATAATTCAACATATATTAGTGAATTAGTTAATGGAGCAAGAGTTG
GATGGAATCATTATACAACAAATGTTGATGGTATGGTTAATTTAAATTTTTCAAATAATG
TAAATTGGGATTTAATAAATAATTGGGCAGGATCAAGTGGCACATATTTTAGTGGTTGGG
GAATTTCAACATTTTCATTGAATACTAGTGAAACCATTTTAGTTACATGTTCAGGTATTG
CAAAGTTTTGGATAGATTCAACAGTGATGCAAGGTGATTCATATGGATTGGGATTACAAT
TTAATTCAATTCAATTATCAAGTGGTACACATCAATTAAAAGTTAGAATCATTGGATCAG
AGGCAGCAAGTTATCAATGTGAAATCATAACAACCAAAGAGGAGCAATCAATTTTCATAG
TCTATGAAAATACGATTGTACCAGATATAGTTGATAATGAATTTTCATCACCTTTTATCT
XXXXXXXXXXTGGTCAAAAATTTAATTATATTCAACTACCATCACATTATTGTACCGATG
GTACAAAGGTTAAAAATAATAAAAAGAGTGGTTCAAGTGTAGTTTGGTCAATTTGTAATG
ATGGTAATGATTGGATGTGGAGTGAAAGATCACCATTAAATTCTGGTCCAATGGTACAAA
TATTAGATTATCCAATTTTAATTGTTTATGGTACAATTGGAAGTGAACAACAAACCAATC
AACGTCAACAATCTGCAGTTTATTTATCAAATGTTTTAATGTATCAAATGAGATATTCAA
TAAATGTTTTAGAGGATACTCAATTCACAAATGACTTATTCACAACTTATAATGTAATAT
TTATGGGAGGCCCACAAACAAATAAAGCAGTTTACTCAATTCAATCAGTTTTACCATCAC
CAATTGGTTTCCATGGTTCAAGTGATAATATGTCATTCTCTTTAAATGATGATTCAAATA
TGTTTTCAGGTCCTTCTGTTGGTTTATTGTTTTTATCATCATGTTATTCACCAGAGGCCA
TTATGAAAATTACACCAAAAGAACGTTATACTCAAGCTAGACAAGGTTGTATGCTTACAG
TTATTGAGGGTACNTGATACTATTGGTTTCCAAAATAGTCTTTTCAATTTCCCAACTAAA
TCATCTTTCCCAATGCCAGATTTCATGATATTAGGTCCAAATTTTGGTTATCAAGGTGTA
TCGGGTGCTAATGCTCTTGGATTTTGGGATAATAATGGCAACTATCGACCTTTCTTATAT
AACTTCAATTTTAAA
sequence update 2002.10.25
Translated Amino Acid sequence
syk*IMKLLLYLLSLFIILISQNLVNCENYYLTEWDILAPFPSAPREDVDVLNCYGGIDN
IPIGDNSTYISELVNGARVGWNHYTTNVDGMVNLNFSNNVNWDLINNWAGSSGTYFSGWG
ISTFSLNTSETILVTCSGIAKFWIDSTVMQGDSYGLGLQFNSIQLSSGTHQLKVRIIGSE
AASYQCEIITTKEEQSIFIVYENTIVPDIVDNEFSSPFI---

---GQKFNYIQLPSHYCTDGTKVKNNKKSGSSVVWSICNDGNDWMWSERSPLNSGPMVQI
LDYPILIVYGTIGSEQQTNQRQQSAVYLSNVLMYQMRYSINVLEDTQFTNDLFTTYNVIF
MGGPQTNKAVYSIQSVLPSPIGFHGSSDNMSFSLNDDSNMFSGPSVGLLFLSSCYSPEAI
MKITPKERYTQARQGCMLTVIEGT*yywfpk*sfqfpn*iifpnarfhdirskfwlsrci
gc*cswilg**wqlstfli*lqf*


Translated Amino Acid sequence (All Frames)
Frame A:
ivtnk**ncyyiyfhyllf*ypkt*livkiii*qngiy*hhfqvhqekmlmy*ivmveli
iyq*viiqhilvn*lmeqeldgiiiqqmlmvwli*ifqim*igi**iigqdqvahilvvg
efqhfh*ilvkpf*lhvqvlqsfg*iqq*ckvihmdwdynliqfnyqvvhin*klesldq
rqqvinvks*qpkrsnqfs*smkirlyqi*limnfhhlls---

---wski*lysttitllyrwykg*k**kewfkcslvnl**w**ldve*kitikfwsngtn
irlsnfnclwynwk*ttnqststicslfikcfnvsneifnkcfrgysihk*lihnl*cni
ygrptnk*ssllnsisftitnwfpwfk**yvilfk**fkyvfrsfcwfivfiimlftrgh
yenytkrtlyss*trlyaysy*gyxillvskivfsisqlnhlsqcqis*y*vqilvikvy
rvlmlldfgiimatidlsyitsil

Frame B:
*lqinneiviiftfiiyyfnipkps*l*kllfnrmgyistiskctkrrc*cikllwwn**
ytnr**fniy**is*wskswmeslynkc*wyg*fkffk*cklgfnk*lgrikwhif*wlg
nfnifiey**nhfsymfryckvldrfnsdar*fiwigiti*fnsiikwytsiks*nhwir
gsklsm*nhnnqrgainfhsl*kydctrys***ifitfy---

---GQKFNYIQLPSHYCTDGTKVKNNKKSGSSVVWSICNDGNDWMWSERSPLNSGPMVQI
LDYPILIVYGTIGSEQQTNQRQQSAVYLSNVLMYQMRYSINVLEDTQFTNDLFTTYNVIF
MGGPQTNKAVYSIQSVLPSPIGFHGSSDNMSFSLNDDSNMFSGPSVGLLFLSSCYSPEAI
MKITPKERYTQARQGCMLTVIEGT*yywfpk*sfqfpn*iifpnarfhdirskfwlsrci
gc*cswilg**wqlstfli*lqf*

Frame C:
syk*IMKLLLYLLSLFIILISQNLVNCENYYLTEWDILAPFPSAPREDVDVLNCYGGIDN
IPIGDNSTYISELVNGARVGWNHYTTNVDGMVNLNFSNNVNWDLINNWAGSSGTYFSGWG
ISTFSLNTSETILVTCSGIAKFWIDSTVMQGDSYGLGLQFNSIQLSSGTHQLKVRIIGSE
AASYQCEIITTKEEQSIFIVYENTIVPDIVDNEFSSPFI---

---vknliifnyhhiivpmvqrlkiikrvvqv*fgqfvmmvmigcgvkdhh*ilvqwyky
*iiqf*lfmvqlevnnkpinvnnlqfiyqmf*cik*diq*mf*rilnsqmtysqlim*yl
weahkqikqftqfnqfyhhqlvsmvqviichsl*mmiqicfqvlllvycfyhhvihqrpl
*klhqknvilkldkvvclqllrvxdtigfqnslfnfptkssfpmpdfmilgpnfgyqgvs
ganalgfwdnngnyrpflynfnfk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP538 (VHP538Q) /CSM/VH/VHP5-B/VHP538Q.Seq.d/ 2819 0.0
VHC878 (VHC878Q) /CSM/VH/VHC8-D/VHC878Q.Seq.d/ 1540 0.0
CHR566 (CHR566Q) /CSM/CH/CHR5-C/CHR566Q.Seq.d/ 1540 0.0
CHM432 (CHM432Q) /CSM/CH/CHM4-B/CHM432Q.Seq.d/ 1526 0.0
CHI245 (CHI245Q) /CSM/CH/CHI2-B/CHI245Q.Seq.d/ 1526 0.0
VHP233 (VHP233Q) /CSM/VH/VHP2-B/VHP233Q.Seq.d/ 1524 0.0
VHB803 (VHB803Q) /CSM/VH/VHB8-A/VHB803Q.Seq.d/ 1518 0.0
CHR594 (CHR594Q) /CSM/CH/CHR5-D/CHR594Q.Seq.d/ 1515 0.0
CHM323 (CHM323Q) /CSM/CH/CHM3-A/CHM323Q.Seq.d/ 1511 0.0
VHE145 (VHE145Q) /CSM/VH/VHE1-B/VHE145Q.Seq.d/ 1507 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446330) Dictyostelium discoideum cDNA clone:ddv62k09, 3' ... 1550 0.0 1
(BJ437333) Dictyostelium discoideum cDNA clone:ddv33n20, 3' ... 1394 0.0 1
(BJ380130) Dictyostelium discoideum cDNA clone:ddc37j01, 3' ... 1352 0.0 1
(BJ444966) Dictyostelium discoideum cDNA clone:ddv58c06, 3' ... 1322 0.0 4
(BJ352066) Dictyostelium discoideum cDNA clone:dda45d16, 3' ... 1302 0.0 1
(BJ438365) Dictyostelium discoideum cDNA clone:ddv37o16, 3' ... 1283 0.0 2
(BJ386308) Dictyostelium discoideum cDNA clone:ddc57e19, 3' ... 1273 0.0 3
(BJ379119) Dictyostelium discoideum cDNA clone:ddc33h21, 3' ... 1273 0.0 2
(BJ445973) Dictyostelium discoideum cDNA clone:ddv61a10, 3' ... 1195 0.0 3
(BJ444812) Dictyostelium discoideum cDNA clone:ddv57d13, 3' ... 1195 0.0 3
dna update 2008.12.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE008691_1920(AE008691|pid:none) Thermoanaerobacter tengcongensi... 44 0.011
AE017341_214(AE017341|pid:none) Cryptococcus neoformans var. neo... 41 0.13
CP000267_695(CP000267|pid:none) Rhodoferax ferrireducens T118, c... 39 0.47
AC116957_137(AC116957|pid:none) Dictyostelium discoideum chromos... 39 0.62
AB1151(AB1151) internalin proteins, probable peptidoglycan bound... 37 1.4
AE017341_213(AE017341|pid:none) Cryptococcus neoformans var. neo... 37 1.4
CP000644_3056(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 37 1.8
CR940347_826(CR940347|pid:none) Theileria annulata strain Ankara... 36 4.0
CP001025_1096(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 35 5.3
CP000151_1147(CP000151|pid:none) Burkholderia sp. 383 chromosome... 35 5.3
protein update 2009. 7.21
PSORT

psg: 0.98 gvh: 0.73 alm: 0.39 top: 0.20 tms: 0.00 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: extracellular, including cell wall
12.0 %: cytoplasmic
12.0 %: endoplasmic reticulum
8.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: nuclear

>> prediction for VHP538 is exc

5' end seq. ID VHP538F
5' end seq.
>VHP538F.Seq
ATAGTTACAAATAAATAATGAAATTGTTATTATATTTACTTTCATTATTTATTATTTTAA
TATCCCAAAACCTAGTTAATTGTGAAAATTATTATTTAACAGAATGGGATATATTAGCAC
CATTTCCAAGTGCACCAAGAGAAGATGTTGATGTATTAAATTGTTATGGTGGAATTGATA
ATATACCAATAGGTGATAATTCAACATATATTAGTGAATTAGTTAATGGAGCAAGAGTTG
GATGGAATCATTATACAACAAATGTTGATGGTATGGTTAATTTAAATTTTTCAAATAATG
TAAATTGGGATTTAATAAATAATTGGGCAGGATCAAGTGGCACATATTTTAGTGGTTGGG
GAATTTCAACATTTTCATTGAATACTAGTGAAACCATTTTAGTTACATGTTCAGGTATTG
CAAAGTTTTGGATAGATTCAACAGTGATGCAAGGTGATTCATATGGATTGGGATTACAAT
TTAATTCAATTCAATTATCAAGTGGTACACATCAATTAAAAGTTAGAATCATTGGATCAG
AGGCAGCAAGTTATCAATGTGAAATCATAACAACCAAAGAGGAGCAATCAATTTTCATAG
TCTATGAAAATACGATTGTACCAGATATAGTTGATAATGAATTTTCATCACCTTTTATCT
NNNNNNNNNN
Length of 5' end seq. 670
3' end seq. ID VHP538Z
3' end seq.
>VHP538Z.Seq
NNNNNNNNNNTGGTCAAAAATTTAATTATATTCAACTACCATCACATTATTGTACCGATG
GTACAAAGGTTAAAAATAATAAAAAGAGTGGTTCAAGTGTAGTTTGGTCAATTTGTAATG
ATGGTAATGATTGGATGTGGAGTGAAAGATCACCATTAAATTCTGGTCCAATGGTACAAA
TATTAGATTATCCAATTTTAATTGTTTATGGTACAATTGGAAGTGAACAACAAACCAATC
AACGTCAACAATCTGCAGTTTATTTATCAAATGTTTTAATGTATCAAATGAGATATTCAA
TAAATGTTTTAGAGGATACTCAATTCACAAATGACTTATTCACAACTTATAATGTAATAT
TTATGGGAGGCCCACAAACAAATAAAGCAGTTTACTCAATTCAATCAGTTTTACCATCAC
CAATTGGTTTCCATGGTTCAAGTGATAATATGTCATTCTCTTTAAATGATGATTCAAATA
TGTTTTCAGGTCCTTCTGTTGGTTTATTGTTTTTATCATCATGTTATTCACCAGAGGCCA
TTATGAAAATTACACCAAAAGAACGTTATACTCAAGCTAGACAAGGTTGTATGCTTACAG
TTATTGAGGGTACNTGATACTATTGGTTTCCAAAATAGTCTTTTCAATTTCCCAACTAAA
TCATCTTTCCCAATGCCAGATTTCATGATATTAGGTCCAAATTTTGGTTATCAAGGTGTA
TCGGGTGCTAATGCTCTTGGATTTTGGGATAATAATGGCAACTATCGACCTTTCTTATAT
AACTTCAATTTTAAA
Length of 3' end seq. 795
Connected seq. ID VHP538P
Connected seq.
>VHP538P.Seq
ATAGTTACAAATAAATAATGAAATTGTTATTATATTTACTTTCATTATTTATTATTTTAA
TATCCCAAAACCTAGTTAATTGTGAAAATTATTATTTAACAGAATGGGATATATTAGCAC
CATTTCCAAGTGCACCAAGAGAAGATGTTGATGTATTAAATTGTTATGGTGGAATTGATA
ATATACCAATAGGTGATAATTCAACATATATTAGTGAATTAGTTAATGGAGCAAGAGTTG
GATGGAATCATTATACAACAAATGTTGATGGTATGGTTAATTTAAATTTTTCAAATAATG
TAAATTGGGATTTAATAAATAATTGGGCAGGATCAAGTGGCACATATTTTAGTGGTTGGG
GAATTTCAACATTTTCATTGAATACTAGTGAAACCATTTTAGTTACATGTTCAGGTATTG
CAAAGTTTTGGATAGATTCAACAGTGATGCAAGGTGATTCATATGGATTGGGATTACAAT
TTAATTCAATTCAATTATCAAGTGGTACACATCAATTAAAAGTTAGAATCATTGGATCAG
AGGCAGCAAGTTATCAATGTGAAATCATAACAACCAAAGAGGAGCAATCAATTTTCATAG
TCTATGAAAATACGATTGTACCAGATATAGTTGATAATGAATTTTCATCACCTTTTATCT
----------TGGTCAAAAATTTAATTATATTCAACTACCATCACATTATTGTACCGATG
GTACAAAGGTTAAAAATAATAAAAAGAGTGGTTCAAGTGTAGTTTGGTCAATTTGTAATG
ATGGTAATGATTGGATGTGGAGTGAAAGATCACCATTAAATTCTGGTCCAATGGTACAAA
TATTAGATTATCCAATTTTAATTGTTTATGGTACAATTGGAAGTGAACAACAAACCAATC
AACGTCAACAATCTGCAGTTTATTTATCAAATGTTTTAATGTATCAAATGAGATATTCAA
TAAATGTTTTAGAGGATACTCAATTCACAAATGACTTATTCACAACTTATAATGTAATAT
TTATGGGAGGCCCACAAACAAATAAAGCAGTTTACTCAATTCAATCAGTTTTACCATCAC
CAATTGGTTTCCATGGTTCAAGTGATAATATGTCATTCTCTTTAAATGATGATTCAAATA
TGTTTTCAGGTCCTTCTGTTGGTTTATTGTTTTTATCATCATGTTATTCACCAGAGGCCA
TTATGAAAATTACACCAAAAGAACGTTATACTCAAGCTAGACAAGGTTGTATGCTTACAG
TTATTGAGGGTACNTGATACTATTGGTTTCCAAAATAGTCTTTTCAATTTCCCAACTAAA
TCATCTTTCCCAATGCCAGATTTCATGATATTAGGTCCAAATTTTGGTTATCAAGGTGTA
TCGGGTGCTAATGCTCTTGGATTTTGGGATAATAATGGCAACTATCGACCTTTCTTATAT
AACTTCAATTTTAAA
Length of connected seq. 1445
Full length Seq ID -
Full length Seq. -
Length of full length seq. -