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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP537
Library VH
(Link to library)
Clone ID VHP537
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16708-1
Original site URL
Representative seq. ID VHP537P
(Link to Original site)
Representative DNA sequence 
>VHP537 (VHP537Q) /CSM/VH/VHP5-B/VHP537Q.Seq.d/
AGATTCGGTTTAAAGAAATTTTATTGGTTTTTTAATACTAAATATTAATACTAATATAAT
AAATAAATAAATAAATAAATATATAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA
NCCCCCCNANNNNNNNAXXXXXXXXXXAAGTTTTATTATCAATCNCTGGTTTANAANTNG
CCTATGCAAATTCNCCNCGTTNTATGAAATCATTGGNAATTGCAGGTTGGNTAATTTGTG
TTTCCNTTGGTAANATGTTTNATGNNTTTGTAANTGAANTNANTGAANTGCCAGNATANG
TTTTATCATTAATANTTGGGTC
sequence update 2002.10.25
Translated Amino Acid sequence 
irfkeillvf*y*ilili**ink*ini*INKKKKKKKKKXPPXXX---

---VLLSIXGLXXAYANSPRXMKSLXIAGWXICVSXGXMFXXFVXEXXEXPXXVLSLIXG
Translated Amino Acid sequence (All Frames) 
Frame A:
rfglkkfywffntky*y*ynk*ink*iyk*ikkkkkkkkkxpxxx---

---kfyyqslvxxxpmqixxvx*nhwxlqvg*fvfplvxcxmxl*xxxxxcqxxfyh*xl
g

Frame B:
dsv*rnfigflilnintniink*inkyink*kkkkkkkkxppxxx---

---sfiinxwfxxxlckfxxxyeiigncrlxnlcfxw*xvxxxcx*xx*xaxixfiinxw
v

Frame C:
irfkeillvf*y*ilili**ink*ini*INKKKKKKKKKXPPXXX---

---VLLSIXGLXXAYANSPRXMKSLXIAGWXICVSXGXMFXXFVXEXXEXPXXVLSLIXG
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP537 (VHP537Q) /CSM/VH/VHP5-B/VHP537Q.Seq.d/                        216   2e-55
VSE439 (VSE439Q) /CSM/VS/VSE4-B/VSE439Q.Seq.d/                        194   6e-49
VSE431 (VSE431Q) /CSM/VS/VSE4-B/VSE431Q.Seq.d/                        194   6e-49
VHI380 (VHI380Q) /CSM/VH/VHI3-D/VHI380Q.Seq.d/                        194   6e-49
VHA360 (VHA360Q) /CSM/VH/VHA3-C/VHA360Q.Seq.d/                        194   6e-49
VFJ818 (VFJ818Q) /CSM/VF/VFJ8-A/VFJ818Q.Seq.d/                        194   6e-49
VFG511 (VFG511Q) /CSM/VF/VFG5-A/VFG511Q.Seq.d/                        194   6e-49
VFG459 (VFG459Q) /CSM/VF/VFG4-C/VFG459Q.Seq.d/                        194   6e-49
VFA693 (VFA693Q) /CSM/VF/VFA6-D/VFA693Q.Seq.d/                        194   6e-49
SSM504 (SSM504Q) /CSM/SS/SSM5-A/SSM504Q.Seq.d/                        194   6e-49
own update 2003.10.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446318) Dictyostelium discoideum cDNA clone:ddv62i09, 3' ...   216   4e-52  1
(C89648) Dictyostelium discoideum slug cDNA, clone SSA471.        196   3e-46  1
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...   194   1e-45  1
(AU263104) Dictyostelium discoideum vegetative cDNA clone:VS...   194   1e-45  1
(AU263098) Dictyostelium discoideum vegetative cDNA clone:VS...   194   1e-45  1
(AU073153) Dictyostelium discoideum slug cDNA, clone SSG264.      194   1e-45  1
(AU039506) Dictyostelium discoideum slug cDNA, clone SLA759.      194   1e-45  1
(AU039060) Dictyostelium discoideum slug cDNA, clone SSM333.      194   1e-45  1
(AU038252) Dictyostelium discoideum slug cDNA, clone SSH472.      194   1e-45  1
(AU037863) Dictyostelium discoideum slug cDNA, clone SSE382.      194   1e-45  1
dna update 2008.12.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115680_27(AC115680|pid:none) Dictyostelium discoideum chromoso...    75   9e-13
AB455540_1(AB455540|pid:none) Salmo salar PepT1 mRNA for solute ...    38   0.13
AY921634_1(AY921634|pid:none) Gadus morhua peptide transporter (...    38   0.13
BC124581_1(BC124581|pid:none) Danio rerio solute carrier family ...    37   0.28
BX548071_2(BX548071|pid:none) Zebrafish DNA sequence from clone ...    37   0.28
AY860424_1(AY860424|pid:none) Rattus norvegicus pineal gland-spe...    36   0.37
(P51574) RecName: Full=Solute carrier family 15 member 1; AltNam...    36   0.37
AY170828_1(AY170828|pid:none) Chionodraco hamatus intestinal oli...    35   0.63
AY027496_1(AY027496|pid:none) Ovis aries proton-dependent gastro...    35   0.82
(Q9JIP7) RecName: Full=Solute carrier family 15 member 1; AltNam...    35   0.82
protein update 2009. 7.21
PSORT 

 psg: 0.92  gvh: 0.66  alm: 0.41  top: 0.00  tms: 0.00  mit: 0.31  mip: 0.07
 nuc: 0.24  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: extracellular, including cell wall
	 24.0 %: cytoplasmic
	 12.0 %: vacuolar
	 12.0 %: nuclear
	 12.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VHP537 is exc
5' end seq. ID VHP537F
5' end seq. 
>VHP537F.Seq
AGATTCGGTTTAAAGAAATTTTATTGGTTTTTTAATACTAAATATTAATACTAATATAAT
AAATAAATAAATAAATAAATATATAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA
NCCCCCCNANNNNNNNANNNNNNNNNN
Length of 5' end seq. 147
3' end seq. ID VHP537Z
3' end seq. 
>VHP537Z.Seq
NNNNNNNNNNAAGTTTTATTATCAATCNCTGGTTTANAANTNGCCTATGCAAATTCNCCN
CGTTNTATGAAATCATTGGNAATTGCAGGTTGGNTAATTTGTGTTTCCNTTGGTAANATG
TTTNATGNNTTTGTAANTGAANTNANTGAANTGCCAGNATANGTTTTATCATTAATANTT
GGGTC
Length of 3' end seq. 185
Connected seq. ID VHP537P
Connected seq. 
>VHP537P.Seq
AGATTCGGTTTAAAGAAATTTTATTGGTTTTTTAATACTAAATATTAATACTAATATAAT
AAATAAATAAATAAATAAATATATAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA
NCCCCCCNANNNNNNNA----------AAGTTTTATTATCAATCNCTGGTTTANAANTNG
CCTATGCAAATTCNCCNCGTTNTATGAAATCATTGGNAATTGCAGGTTGGNTAATTTGTG
TTTCCNTTGGTAANATGTTTNATGNNTTTGTAANTGAANTNANTGAANTGCCAGNATANG
TTTTATCATTAATANTTGGGTC
Length of connected seq. 312
Full length Seq ID -
Full length Seq. -
Length of full length seq. -