VHP535
Library VH
(Link to library)
Clone ID VHP535
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHP535P
(Link to Original site)
Representative DNA sequence
>VHP535 (VHP535Q) /CSM/VH/VHP5-B/VHP535Q.Seq.d/
TATAAAANGTTNTTAAATAAATAAATAATAATAATAATAATAATANCAATATTAATAATA
ATAATAAAATNTNTTTTAAAAAAAAANTAAAANTAAAATAAAANTNTTNGTCCNTAATAA
AATCTNCNACANTANTAATAGTTAAAATAATAAAANGNCANATCAAATANCAGXXXXXXX
XXXCAACTCCATTCAAACCACCAAGTGAAATGTTATCAAGTATTACATATTTCGAATCTT
TCTACAAAAAAAGTTACCAAGGTAGAGTTTTAACTTTCCTTTACGATTTTTCAAGAGCTG
ATGTTGACTCAAGACAAGCCAAAGGAAAAATATATAAACTTACAACTACAGCATACCAAA
TGGCAATTTTATTAATGTTTAATGGAGCAGATAAGATTACTAGATTCCTTATTAATGATA
CAATTGGTTTAGATGAAACATCAATTCGTCTTCCATTATTAGCTTTAATCAAAACAGGTA
TTATTGAGTGTTCAGAACCAAGCTTCAAGAATTGGAACAACGATACTGAATTCACTGTAA
ATTCTAAATTCAGTTCAAAGAAGATGAAGGTCAGCTGTAATATTGCTGTTCAAATTGGTG
AAACTAAACAATCAGAAGGTCAACAAACTGTCAGCGAACAAGAAATTGAAAAAGAACGTT
TCTTCAAACTTCAAGCTGCCATTGTACGTATTATGAAATCTAAAAAGACAATGACTCACA
ATGATCTCACTGTGGAAACTACCACTCAAGTCAGCAAATGGTTCACACCAAAGATCNCTG
CCATTAAAAAGGCGATCGAATACCTCATCGACCAAGAATACATTAGAAGAACTACNAGAN
AATCCATCCTGCAAGAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence
*xvxk*innnnnnnxninnnnkxxfkkkxkxk*XXXSXIKSXTXXIVKIIKXXIKXQ---

---TPFKPPSEMLSSITYFESFYKKSYQGRVLTFLYDFSRADVDSRQAKGKIYKLTTTAY
QMAILLMFNGADKITRFLINDTIGLDETSIRLPLLALIKTGIIECSEPSFKNWNNDTEFT
VNSKFSSKKMKVSCNIAVQIGETKQSEGQQTVSEQEIEKERFFKLQAAIVRIMKSKKTMT
HNDLTVETTTQVSKWFTPKIXAIKKAIEYLIDQEYIRRTTRXSILQEN


Translated Amino Acid sequence (All Frames)
Frame A:
ykxxlnk*iiiiiiixiliiiikxxlkkx*x*nkxxxp**nlxxx**lk**xxxsnx---

---qlhsnhqvkcyqvlhisnlstkkvtkvef*lsftifqelmltqdkpkekyinlqlqh
tkwqfy*clmeqirlldsllmiqlv*mkhqfvfhy*l*skqvllsvqnqasrigttilns
l*ilnsvqrr*rsavillfklvklnnqkvnklsankklkknvssnfklplyvl*nlkrq*
ltmislwklplksangshqrslplkrrsntsstkntleelxxnpsckki

Frame B:
ikxx*ink******xqy*****nxf*kkxkxkikxxvxnkixxxxns*nnkxxxqix---

---nsiqttk*nvikyyifriflqkklpr*sfnfplrffks*c*lktsqrkni*tynysi
pngnfinv*wsr*dy*ipy**ynwfr*ninsssiisfnqnryy*vfrtklqeleqry*ih
ckf*iqfkedegql*yccsnw*n*tirrstncqrtrn*krtflqtsschctyyei*kdnd
sq*shcgnyhssqqmvhtkdxch*kgdriphrprih*knyxxihpark

Frame C:
*xvxk*innnnnnnxninnnnkxxfkkkxkxk*XXXSXIKSXTXXIVKIIKXXIKXQ---

---TPFKPPSEMLSSITYFESFYKKSYQGRVLTFLYDFSRADVDSRQAKGKIYKLTTTAY
QMAILLMFNGADKITRFLINDTIGLDETSIRLPLLALIKTGIIECSEPSFKNWNNDTEFT
VNSKFSSKKMKVSCNIAVQIGETKQSEGQQTVSEQEIEKERFFKLQAAIVRIMKSKKTMT
HNDLTVETTTQVSKWFTPKIXAIKKAIEYLIDQEYIRRTTRXSILQEN

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP535 (VHP535Q) /CSM/VH/VHP5-B/VHP535Q.Seq.d/ 1318 0.0
CFK127 (CFK127Q) /CSM/CF/CFK1-B/CFK127Q.Seq.d/ 1257 0.0
VHK283 (VHK283Q) /CSM/VH/VHK2-D/VHK283Q.Seq.d/ 1253 0.0
VHM661 (VHM661Q) /CSM/VH/VHM6-C/VHM661Q.Seq.d/ 1247 0.0
AHE458 (AHE458Q) /CSM/AH/AHE4-C/AHE458Q.Seq.d/ 1247 0.0
VHP693 (VHP693Q) /CSM/VH/VHP6-D/VHP693Q.Seq.d/ 1245 0.0
VHP636 (VHP636Q) /CSM/VH/VHP6-B/VHP636Q.Seq.d/ 1245 0.0
VHP488 (VHP488Q) /CSM/VH/VHP4-D/VHP488Q.Seq.d/ 1245 0.0
VHM669 (VHM669Q) /CSM/VH/VHM6-C/VHM669Q.Seq.d/ 1245 0.0
VHK869 (VHK869Q) /CSM/VH/VHK8-C/VHK869Q.Seq.d/ 1245 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446298) Dictyostelium discoideum cDNA clone:ddv62e09, 3' ... 1189 0.0 2
(BJ381701) Dictyostelium discoideum cDNA clone:ddc42j12, 3' ... 1162 0.0 1
(BJ443065) Dictyostelium discoideum cDNA clone:ddv51e22, 3' ... 1158 0.0 2
(BJ376127) Dictyostelium discoideum cDNA clone:ddc21e07, 3' ... 1158 0.0 2
(BJ348525) Dictyostelium discoideum cDNA clone:dda33c13, 3' ... 1158 0.0 1
(BJ438979) Dictyostelium discoideum cDNA clone:ddv39f05, 3' ... 1152 0.0 3
(BJ384174) Dictyostelium discoideum cDNA clone:ddc48c17, 3' ... 1152 0.0 2
(BJ350344) Dictyostelium discoideum cDNA clone:dda39d16, 3' ... 1152 0.0 2
(BJ446482) Dictyostelium discoideum cDNA clone:ddv62i24, 3' ... 1150 0.0 2
(BJ446309) Dictyostelium discoideum cDNA clone:ddv62g10, 3' ... 1150 0.0 2
dna update 2008.12.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CU633897_277(CU633897|pid:none) Podospora anserina genomic DNA c... 130 7e-29
AE017356_115(AE017356|pid:none) Cryptococcus neoformans var. neo... 126 1e-27
AK072402_1(AK072402|pid:none) Oryza sativa Japonica Group cDNA c... 125 2e-27
FB802359_1(FB802359|pid:none) Sequence 21632 from Patent WO20080... 125 2e-27
AL606454_2(AL606454|pid:none) Oryza sativa genomic DNA, chromoso... 124 3e-27
FB802423_1(FB802423|pid:none) Sequence 21696 from Patent WO20080... 123 7e-27
AM484063_2(AM484063|pid:none) Vitis vinifera contig VV78X066416.... 122 2e-26
BT069454_1(BT069454|pid:none) Zea mays full-length cDNA clone ZM... 121 3e-26
FB802477_1(FB802477|pid:none) Sequence 21750 from Patent WO20080... 121 3e-26
AC146568_18(AC146568|pid:none) Medicago truncatula clone mth2-10... 120 6e-26
protein update 2009. 7.21
PSORT

psg: 0.74 gvh: 0.50 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: cytoskeletal

>> prediction for VHP535 is nuc

5' end seq. ID VHP535F
5' end seq.
>VHP535F.Seq
TATAAAANGTTNTTAAATAAATAAATAATAATAATAATAATAATANCAATATTAATAATA
ATAATAAAATNTNTTTTAAAAAAAAANTAAAANTAAAATAAAANTNTTNGTCCNTAATAA
AATCTNCNACANTANTAATAGTTAAAATAATAAAANGNCANATCAAATANCAGNNNNNNN
NNN
Length of 5' end seq. 183
3' end seq. ID VHP535Z
3' end seq.
>VHP535Z.Seq
NNNNNNNNNNCAACTCCATTCAAACCACCAAGTGAAATGTTATCAAGTATTACATATTTC
GAATCTTTCTACAAAAAAAGTTACCAAGGTAGAGTTTTAACTTTCCTTTACGATTTTTCA
AGAGCTGATGTTGACTCAAGACAAGCCAAAGGAAAAATATATAAACTTACAACTACAGCA
TACCAAATGGCAATTTTATTAATGTTTAATGGAGCAGATAAGATTACTAGATTCCTTATT
AATGATACAATTGGTTTAGATGAAACATCAATTCGTCTTCCATTATTAGCTTTAATCAAA
ACAGGTATTATTGAGTGTTCAGAACCAAGCTTCAAGAATTGGAACAACGATACTGAATTC
ACTGTAAATTCTAAATTCAGTTCAAAGAAGATGAAGGTCAGCTGTAATATTGCTGTTCAA
ATTGGTGAAACTAAACAATCAGAAGGTCAACAAACTGTCAGCGAACAAGAAATTGAAAAA
GAACGTTTCTTCAAACTTCAAGCTGCCATTGTACGTATTATGAAATCTAAAAAGACAATG
ACTCACAATGATCTCACTGTGGAAACTACCACTCAAGTCAGCAAATGGTTCACACCAAAG
ATCNCTGCCATTAAAAAGGCGATCGAATACCTCATCGACCAAGAATACATTAGAAGAACT
ACNAGANAATCCATCCTGCAAGAAAATA
Length of 3' end seq. 688
Connected seq. ID VHP535P
Connected seq.
>VHP535P.Seq
TATAAAANGTTNTTAAATAAATAAATAATAATAATAATAATAATANCAATATTAATAATA
ATAATAAAATNTNTTTTAAAAAAAAANTAAAANTAAAATAAAANTNTTNGTCCNTAATAA
AATCTNCNACANTANTAATAGTTAAAATAATAAAANGNCANATCAAATANCAG-------
---CAACTCCATTCAAACCACCAAGTGAAATGTTATCAAGTATTACATATTTCGAATCTT
TCTACAAAAAAAGTTACCAAGGTAGAGTTTTAACTTTCCTTTACGATTTTTCAAGAGCTG
ATGTTGACTCAAGACAAGCCAAAGGAAAAATATATAAACTTACAACTACAGCATACCAAA
TGGCAATTTTATTAATGTTTAATGGAGCAGATAAGATTACTAGATTCCTTATTAATGATA
CAATTGGTTTAGATGAAACATCAATTCGTCTTCCATTATTAGCTTTAATCAAAACAGGTA
TTATTGAGTGTTCAGAACCAAGCTTCAAGAATTGGAACAACGATACTGAATTCACTGTAA
ATTCTAAATTCAGTTCAAAGAAGATGAAGGTCAGCTGTAATATTGCTGTTCAAATTGGTG
AAACTAAACAATCAGAAGGTCAACAAACTGTCAGCGAACAAGAAATTGAAAAAGAACGTT
TCTTCAAACTTCAAGCTGCCATTGTACGTATTATGAAATCTAAAAAGACAATGACTCACA
ATGATCTCACTGTGGAAACTACCACTCAAGTCAGCAAATGGTTCACACCAAAGATCNCTG
CCATTAAAAAGGCGATCGAATACCTCATCGACCAAGAATACATTAGAAGAACTACNAGAN
AATCCATCCTGCAAGAAAATA
Length of connected seq. 851
Full length Seq ID -
Full length Seq. -
Length of full length seq. -