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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP532
Library VH
(Link to library)
Clone ID VHP532
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15611-1
Original site URL
Representative seq. ID VHP532P
(Link to Original site)
Representative DNA sequence 
>VHP532 (VHP532Q) /CSM/VH/VHP5-B/VHP532Q.Seq.d/
ATTTTATATATTTTAATTTGCATTTTTTTCATATTATCATTATTATTTTTATTTTAGAAT
TCAAAGAAAAAGAAGGGAAATAGAAAAAATAAAAAAAATAGAAATATNGAAAATTAAATA
AAAAAAAATAATAAAATGTCAACAAAACCAACAATTAATAAAGATGAATTAGTTACATTA
TTCTCACAAATTGGTTTANATTCATCANAAGCTAAAGAGACAACCAATAATGCAACTTTA
TCAAGCNGTTTACAAGAGATCATTAANGAAGCAGGTGCTGAAAGTGGTTGTGAAAAATCT
GTNGGTTTATTATTATACACATTAGCANCTAAATATCCAGCCAATGCAATGAAACATCGT
GCTACACTCGTTGACTATATTGCCAATAAXXXXXXXXXXGCAATTAATTTATTATGTGAT
ACAATTGGTGTAACACGTANTAATGGTACANCCATTTCATATGAATTATTAGAGTTATGT
TGTCGTCAAGATCTTGATGGTAAGGCAACTCGTGCAATGGCAGTTTTCGATCCAATCAAA
GTTGTCATCACCAATTATCCAGAAGATAAGAGTGAAGAGATCAATGCACCAAATATTCCA
TCAAAACCAGAGAAAGGAACTCACAAAATCGATTTCTCACGTATTGTTTACATTGAGAGA
AGTGATTTCCGTATGGAGGATAATAAAGATTTCTTTGGTTTAGCACCAGGTAAAGAGATT
CTCCTCAAATATGCTTACAATATCAAATGTGAAAAAGTTATTCAAGATGCCGATGGTAAA
GTCACTGAACTTCATGTAACCTACGATAAAGATAATAGCTCAAAGAAATTAAAGACCATT
CATTGGGTTTCCTCTGTCGCTGGTACTGAACCAATGAAGGCCGAAGTTAGACTCTATGAA
CATCTCTTTAAGGATTCAGAAATCGGTGATGATTGGTTAAACAATATCAATCCAAATTCA
TTACGTATCATTCCAAACGCCTTCATCGATAAAACTGTATTGGCTTCAAAAGAATATGAT
CGTTATCAATTTGAAAGAGTTGGCTACTTTGTTGTCGATAAAGATACTACCTCTGATAAA
ATGGTTTTCAATAGAACAGTTTCATTAAAAGA
sequence update 2002.10.25
Translated Amino Acid sequence 
ilyiliciffilsllflf*nskkkkgnrknkknrnxen*IKKNNKMSTKPTINKDELVTL
FSQIGLXSSXAKETTNNATLSSXLQEIIXEAGAESGCEKSVGLLLYTLAXKYPANAMKHR
ATLVDYIAN---

---AINLLCDTIGVTRXNGTXISYELLELCCRQDLDGKATRAMAVFDPIKVVITNYPEDK
SEEINAPNIPSKPEKGTHKIDFSRIVYIERSDFRMEDNKDFFGLAPGKEILLKYAYNIKC
EKVIQDADGKVTELHVTYDKDNSSKKLKTIHWVSSVAGTEPMKAEVRLYEHLFKDSEIGD
DWLNNINPNSLRIIPNAFIDKTVLASKEYDRYQFERVGYFVVDKDTTSDKMVFNRTVSLK
Translated Amino Acid sequence (All Frames) 
Frame A:
ilyiliciffilsllflf*nskkkkgnrknkknrnxen*IKKNNKMSTKPTINKDELVTL
FSQIGLXSSXAKETTNNATLSSXLQEIIXEAGAESGCEKSVGLLLYTLAXKYPANAMKHR
ATLVDYIAN---

---AINLLCDTIGVTRXNGTXISYELLELCCRQDLDGKATRAMAVFDPIKVVITNYPEDK
SEEINAPNIPSKPEKGTHKIDFSRIVYIERSDFRMEDNKDFFGLAPGKEILLKYAYNIKC
EKVIQDADGKVTELHVTYDKDNSSKKLKTIHWVSSVAGTEPMKAEVRLYEHLFKDSEIGD
DWLNNINPNSLRIIPNAFIDKTVLASKEYDRYQFERVGYFVVDKDTTSDKMVFNRTVSLK

Frame B:
fyif*faffsyyhyyfyfriqrkrreiekikkieixkik*kkiikcqqnqqlikmn*lhy
shklvxihxklkrqpimqlyqavykrslxkqvlkvvvknlxvyyyth*xlniqpmq*niv
lhsltilpi---

---qliyyviqlv*hvxmvxpfhmny*syvvvkilmvrqlvqwqfsiqsklsspiiqkir
vkrsmhqifhqnqrkeltksishvlftlrevisvwriikislv*hqvkrfssnmltisnv
kklfkmpmvkslnfm*ptikiiaqrn*rpfigfplslvlnq*rpkldsmnislriqksvm
ig*tisiqihyvsfqtpssiklywlqknmivinlkelatllsikilplikwfsieqfh*k

Frame C:
fiyfnlhffhiiiiifilefkekegk*kk*kk*kyxklnkkk**nvnktnn**r*isyii
ltnwfxfixs*rdnq*cnfikxftrdh*xsrc*kwl*kicxfiiihisx*issqcnetsc
ytr*lycq*---

---n*fim*ynwcntx*wyxhfi*iirvmlssrs*w*gnscngsfrsnqschhqlsrr*e
*rdqctkysiktrernsqnrfltyclh*ek*fpygg**rflwfstr*rdspqiclqyqm*
ksysrcrw*sh*tscnlr*r**lkeikdhslgflcrwy*tnegrs*tl*tsl*gfrnr**
lvkqyqskfityhskrlhr*ncigfkri*slsi*kswllccr*ryyl**ngfq*nsfikr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP532 (VHP532Q) /CSM/VH/VHP5-B/VHP532Q.Seq.d/                       1844   0.0
VHI789 (VHI789Q) /CSM/VH/VHI7-D/VHI789Q.Seq.d/                       1402   0.0
VHH810 (VHH810Q) /CSM/VH/VHH8-A/VHH810Q.Seq.d/                       1402   0.0
VHC218 (VHC218Q) /CSM/VH/VHC2-A/VHC218Q.Seq.d/                       1402   0.0
VHA460 (VHA460Q) /CSM/VH/VHA4-C/VHA460Q.Seq.d/                       1402   0.0
VHA226 (VHA226Q) /CSM/VH/VHA2-B/VHA226Q.Seq.d/                       1402   0.0
SHA791 (SHA791Q) /CSM/SH/SHA7-D/SHA791Q.Seq.d/                       1402   0.0
AHL480 (AHL480Q) /CSM/AH/AHL4-D/AHL480Q.Seq.d/                       1402   0.0
AHE465 (AHE465Q) /CSM/AH/AHE4-C/AHE465Q.Seq.d/                       1402   0.0
AHC882 (AHC882Q) /CSM/AH/AHC8-D/AHC882Q.Seq.d/                       1402   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446351) Dictyostelium discoideum cDNA clone:ddv62o07, 3' ...  1400   0.0    1
(BJ442070) Dictyostelium discoideum cDNA clone:ddv48b23, 3' ...  1400   0.0    1
(BJ441216) Dictyostelium discoideum cDNA clone:ddv46d04, 3' ...  1400   0.0    1
(BJ437679) Dictyostelium discoideum cDNA clone:ddv35c06, 3' ...  1400   0.0    1
(BJ436578) Dictyostelium discoideum cDNA clone:ddv31h16, 3' ...  1400   0.0    1
(BJ436464) Dictyostelium discoideum cDNA clone:ddv31c08, 3' ...  1400   0.0    1
(BJ403647) Dictyostelium discoideum cDNA clone:dds25f23, 3' ...  1400   0.0    1
(BJ354544) Dictyostelium discoideum cDNA clone:dda53p20, 3' ...  1400   0.0    1
(BJ350334) Dictyostelium discoideum cDNA clone:dda39b18, 3' ...  1400   0.0    1
(BJ349529) Dictyostelium discoideum cDNA clone:dda36d22, 3' ...  1400   0.0    1
dna update 2008.12.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P14325) RecName: Full=Probable glutaminyl-tRNA synthetase;     ...   477   e-133
AC079374_4(AC079374|pid:none) Arabidopsis thaliana chromosome 1 ...   213   1e-53
D86383(D86383)probable glutaminyl-tRNA synthetase (glnrs) [impor...   213   1e-53
CP000612_186(CP000612|pid:none) Desulfotomaculum reducens MI-1, ...   213   1e-53
(P52780) RecName: Full=Glutaminyl-tRNA synthetase;          EC=6...   207   4e-52
AK065125_1(AK065125|pid:none) Oryza sativa Japonica Group cDNA c...   200   7e-50
GM960710_1(GM960710|pid:none) Sequence 7664 from Patent WO200814...   197   6e-49
EF677959_1(EF677959|pid:none) Picea sitchensis clone WS02811_A02...   196   1e-48
CP000473_4952(CP000473|pid:none) Solibacter usitatus Ellin6076, ...   195   2e-48
CP001124_3758(CP001124|pid:none) Geobacter bemidjiensis Bem, com...   194   5e-48
protein update 2009. 7.21
PSORT 

 psg: 0.50  gvh: 0.56  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHP532 is cyt
5' end seq. ID VHP532F
5' end seq. 
>VHP532F.Seq
ATTTTATATATTTTAATTTGCATTTTTTTCATATTATCATTATTATTTTTATTTTAGAAT
TCAAAGAAAAAGAAGGGAAATAGAAAAAATAAAAAAAATAGAAATATNGAAAATTAAATA
AAAAAAAATAATAAAATGTCAACAAAACCAACAATTAATAAAGATGAATTAGTTACATTA
TTCTCACAAATTGGTTTANATTCATCANAAGCTAAAGAGACAACCAATAATGCAACTTTA
TCAAGCNGTTTACAAGAGATCATTAANGAAGCAGGTGCTGAAAGTGGTTGTGAAAAATCT
GTNGGTTTATTATTATACACATTAGCANCTAAATATCCAGCCAATGCAATGAAACATCGT
GCTACACTCGTTGACTATATTGCCAATAANNNNNNNNNN
Length of 5' end seq. 399
3' end seq. ID VHP532Z
3' end seq. 
>VHP532Z.Seq
NNNNNNNNNNGCAATTAATTTATTATGTGATACAATTGGTGTAACACGTANTAATGGTAC
ANCCATTTCATATGAATTATTAGAGTTATGTTGTCGTCAAGATCTTGATGGTAAGGCAAC
TCGTGCAATGGCAGTTTTCGATCCAATCAAAGTTGTCATCACCAATTATCCAGAAGATAA
GAGTGAAGAGATCAATGCACCAAATATTCCATCAAAACCAGAGAAAGGAACTCACAAAAT
CGATTTCTCACGTATTGTTTACATTGAGAGAAGTGATTTCCGTATGGAGGATAATAAAGA
TTTCTTTGGTTTAGCACCAGGTAAAGAGATTCTCCTCAAATATGCTTACAATATCAAATG
TGAAAAAGTTATTCAAGATGCCGATGGTAAAGTCACTGAACTTCATGTAACCTACGATAA
AGATAATAGCTCAAAGAAATTAAAGACCATTCATTGGGTTTCCTCTGTCGCTGGTACTGA
ACCAATGAAGGCCGAAGTTAGACTCTATGAACATCTCTTTAAGGATTCAGAAATCGGTGA
TGATTGGTTAAACAATATCAATCCAAATTCATTACGTATCATTCCAAACGCCTTCATCGA
TAAAACTGTATTGGCTTCAAAAGAATATGATCGTTATCAATTTGAAAGAGTTGGCTACTT
TGTTGTCGATAAAGATACTACCTCTGATAAAATGGTTTTCAATAGAACAGTTTCATTAAA
AGA
Length of 3' end seq. 723
Connected seq. ID VHP532P
Connected seq. 
>VHP532P.Seq
ATTTTATATATTTTAATTTGCATTTTTTTCATATTATCATTATTATTTTTATTTTAGAAT
TCAAAGAAAAAGAAGGGAAATAGAAAAAATAAAAAAAATAGAAATATNGAAAATTAAATA
AAAAAAAATAATAAAATGTCAACAAAACCAACAATTAATAAAGATGAATTAGTTACATTA
TTCTCACAAATTGGTTTANATTCATCANAAGCTAAAGAGACAACCAATAATGCAACTTTA
TCAAGCNGTTTACAAGAGATCATTAANGAAGCAGGTGCTGAAAGTGGTTGTGAAAAATCT
GTNGGTTTATTATTATACACATTAGCANCTAAATATCCAGCCAATGCAATGAAACATCGT
GCTACACTCGTTGACTATATTGCCAATAA----------GCAATTAATTTATTATGTGAT
ACAATTGGTGTAACACGTANTAATGGTACANCCATTTCATATGAATTATTAGAGTTATGT
TGTCGTCAAGATCTTGATGGTAAGGCAACTCGTGCAATGGCAGTTTTCGATCCAATCAAA
GTTGTCATCACCAATTATCCAGAAGATAAGAGTGAAGAGATCAATGCACCAAATATTCCA
TCAAAACCAGAGAAAGGAACTCACAAAATCGATTTCTCACGTATTGTTTACATTGAGAGA
AGTGATTTCCGTATGGAGGATAATAAAGATTTCTTTGGTTTAGCACCAGGTAAAGAGATT
CTCCTCAAATATGCTTACAATATCAAATGTGAAAAAGTTATTCAAGATGCCGATGGTAAA
GTCACTGAACTTCATGTAACCTACGATAAAGATAATAGCTCAAAGAAATTAAAGACCATT
CATTGGGTTTCCTCTGTCGCTGGTACTGAACCAATGAAGGCCGAAGTTAGACTCTATGAA
CATCTCTTTAAGGATTCAGAAATCGGTGATGATTGGTTAAACAATATCAATCCAAATTCA
TTACGTATCATTCCAAACGCCTTCATCGATAAAACTGTATTGGCTTCAAAAGAATATGAT
CGTTATCAATTTGAAAGAGTTGGCTACTTTGTTGTCGATAAAGATACTACCTCTGATAAA
ATGGTTTTCAATAGAACAGTTTCATTAAAAGA
Length of connected seq. 1102
Full length Seq ID -
Full length Seq. -
Length of full length seq. -