VHP524
Library VH
(Link to library)
Clone ID VHP524
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11514-1
Original site URL
Representative seq. ID VHP524P
(Link to Original site)
Representative DNA sequence
>VHP524 (VHP524Q) /CSM/VH/VHP5-A/VHP524Q.Seq.d/
ATTTCTTCAACAATTACTTTTTTTTTAGTTGCATAAAAAAAAACTTATAACAATAATTCA
TTTAAATAAATAAAAGTTATTTAAATAAAAACTTCAAATTATATATTCAATTTTTTCCCA
ATATTTATTTTTAGAAATTCTTTAAAAATAAATATTTTATTATAGAAAAAAAAAAXXXXX
XXXXXTTAGTTGATTTCTTGGGTTACGATGGTTATTGTCATGGTGTTGGTGGTGGTCGTT
GTTNACCATTGAACAATGCTTTGGTTTTATTGGTTGGTGGTATTCCAATTGCTATGCCAA
CTGTACTTTCAGGTAACCATGGCTATTGGTGCAACTCAACTCTCTAAAAAGAAAGCCATC
GTCTCTCGTTTAGCATCCATTGAAGAATTGGCTGCTATGGATATCTTATGTTCCGATAAA
ACTGGTACTCTCACTTTAAATATTTTAACCGNTGATGAACCA
sequence update 2002.10.25
Translated Amino Acid sequence
ffnnyfffscikknl*q*fi*inksylnknfklyiqffpniyf*KFFKNKYFIIEKK---

---LVDFLGYDGYCHGVGGGRCXPLNNALVLLVGGIPIAMPTVLSGNHGYWCNSTL*kes
hrlsfsih*rigcygylmfr*nwyshfkyfnr**t


Translated Amino Acid sequence (All Frames)
Frame A:
isstitfflva*kktynnnsfk*ikvi*iktsnyifnffpififrnslkinill*kkk--
-

---LVDFLGYDGYCHGVGGGRCXPLNNALVLLVGGIPIAMPTVLSGNHGYWCNSTL*kes
hrlsfsih*rigcygylmfr*nwyshfkyfnr**t

Frame B:
flqqllff*lhkkklitiihlnk*klfk*klqiiysifsqylfleil*k*ifyyrkkk--
-

---*liswvtmvivmvlvvvvvxh*tmlwfywlvvfqllcqlyfqvtmaigatqlskkka
ivsrlasieelaamdilcsdktgtltlniltxdep

Frame C:
ffnnyfffscikknl*q*fi*inksylnknfklyiqffpniyf*KFFKNKYFIIEKK---

---s*flglrwllswcwwwslxtieqcfgfigwwysncyanctfr*pwllvqlnslkrkp
sslv*hplknwllwisyvpiklvlsl*if*pxmn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP524 (VHP524Q) /CSM/VH/VHP5-A/VHP524Q.Seq.d/ 537 e-152
VHP712 (VHP712Q) /CSM/VH/VHP7-A/VHP712Q.Seq.d/ 521 e-147
VHL211 (VHL211Q) /CSM/VH/VHL2-A/VHL211Q.Seq.d/ 521 e-147
VHG157 (VHG157Q) /CSM/VH/VHG1-C/VHG157Q.Seq.d/ 521 e-147
VHE674 (VHE674Q) /CSM/VH/VHE6-D/VHE674Q.Seq.d/ 521 e-147
VHD438 (VHD438Q) /CSM/VH/VHD4-B/VHD438Q.Seq.d/ 521 e-147
VHC318 (VHC318Q) /CSM/VH/VHC3-A/VHC318Q.Seq.d/ 521 e-147
VHA653 (VHA653Q) /CSM/VH/VHA6-C/VHA653Q.Seq.d/ 521 e-147
CHL228 (CHL228Q) /CSM/CH/CHL2-B/CHL228Q.Seq.d/ 521 e-147
VHH164 (VHH164Q) /CSM/VH/VHH1-C/VHH164Q.Seq.d/ 476 e-133

own update 2003. 1. 7
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446271) Dictyostelium discoideum cDNA clone:ddv62o05, 3' ... 537 e-148 1
(X98286) D.discoideum mRNA for P-type ATPase. 291 e-142 2
(BJ427336) Dictyostelium discoideum cDNA clone:ddv62h03, 5' ... 291 e-142 2
(BJ421679) Dictyostelium discoideum cDNA clone:ddv43a15, 5' ... 291 e-142 2
(BJ419098) Dictyostelium discoideum cDNA clone:ddv35d05, 5' ... 291 e-142 2
(BJ419844) Dictyostelium discoideum cDNA clone:ddv37l10, 5' ... 291 e-142 2
(BJ367805) Dictyostelium discoideum cDNA clone:ddc44g08, 5' ... 291 e-142 2
(BJ424623) Dictyostelium discoideum cDNA clone:ddv53e04, 5' ... 291 e-142 2
(BJ420888) Dictyostelium discoideum cDNA clone:ddv40c20, 5' ... 291 e-142 2
(BJ418390) Dictyostelium discoideum cDNA clone:ddv32i14, 5' ... 291 e-142 2
dna update 2008.12.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

T30580(T30580) P-type ATPase - slime mold (Dictyostelium discoid... 94 6e-29
(P54679) RecName: Full=Probable plasma membrane ATPase; ... 94 6e-29
AY058212_1(AY058212|pid:none) Chlamydomonas reinhardtii putative... 67 1e-16
AE017356_125(AE017356|pid:none) Cryptococcus neoformans var. neo... 67 4e-16
AL603947_1(AL603947|pid:none) Ustilago maydis gene for predicted... 70 7e-16
AJ003067_1(AJ003067|pid:none) Uromyces fabae plasma membrane (H+... 67 9e-16
D88424_1(D88424|pid:none) Cyanidium caldarium mRNA for plasma me... 67 9e-16
AJ132892_1(AJ132892|pid:none) Medicago truncatula mRNA for H+-AT... 67 1e-15
U08984_1(U08984|pid:none) Zea mays W22 plasma-membrane H+ ATPase... 67 1e-15
AY344962_1(AY344962|pid:none) Phytophthora infestans plasma memb... 66 2e-15
protein update 2009. 7.21
PSORT

psg: 0.61 gvh: 0.54 alm: 0.26 top: 0.53 tms: 0.07 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.39 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
16.0 %: Golgi
16.0 %: nuclear
16.0 %: endoplasmic reticulum
16.0 %: mitochondrial
4.0 %: peroxisomal
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for VHP524 is cyt

5' end seq. ID VHP524F
5' end seq.
>VHP524F.Seq
ATTTCTTCAACAATTACTTTTTTTTTAGTTGCATAAAAAAAAACTTATAACAATAATTCA
TTTAAATAAATAAAAGTTATTTAAATAAAAACTTCAAATTATATATTCAATTTTTTCCCA
ATATTTATTTTTAGAAATTCTTTAAAAATAAATATTTTATTATAGAAAAAAAAAANNNNN
NNNNN
Length of 5' end seq. 185
3' end seq. ID VHP524Z
3' end seq.
>VHP524Z.Seq
NNNNNNNNNNTTAGTTGATTTCTTGGGTTACGATGGTTATTGTCATGGTGTTGGTGGTGG
TCGTTGTTNACCATTGAACAATGCTTTGGTTTTATTGGTTGGTGGTATTCCAATTGCTAT
GCCAACTGTACTTTCAGGTAACCATGGCTATTGGTGCAACTCAACTCTCTAAAAAGAAAG
CCATCGTCTCTCGTTTAGCATCCATTGAAGAATTGGCTGCTATGGATATCTTATGTTCCG
ATAAAACTGGTACTCTCACTTTAAATATTTTAACCGNTGATGAACCA
Length of 3' end seq. 287
Connected seq. ID VHP524P
Connected seq.
>VHP524P.Seq
ATTTCTTCAACAATTACTTTTTTTTTAGTTGCATAAAAAAAAACTTATAACAATAATTCA
TTTAAATAAATAAAAGTTATTTAAATAAAAACTTCAAATTATATATTCAATTTTTTCCCA
ATATTTATTTTTAGAAATTCTTTAAAAATAAATATTTTATTATAGAAAAAAAAAA-----
-----TTAGTTGATTTCTTGGGTTACGATGGTTATTGTCATGGTGTTGGTGGTGGTCGTT
GTTNACCATTGAACAATGCTTTGGTTTTATTGGTTGGTGGTATTCCAATTGCTATGCCAA
CTGTACTTTCAGGTAACCATGGCTATTGGTGCAACTCAACTCTCTAAAAAGAAAGCCATC
GTCTCTCGTTTAGCATCCATTGAAGAATTGGCTGCTATGGATATCTTATGTTCCGATAAA
ACTGGTACTCTCACTTTAAATATTTTAACCGNTGATGAACCA
Length of connected seq. 452
Full length Seq ID -
Full length Seq. -
Length of full length seq. -