VHP523
Library VH
(Link to library)
Clone ID VHP523
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13021-1
Original site URL
Representative seq. ID VHP523P
(Link to Original site)
Representative DNA sequence
>VHP523 (VHP523Q) /CSM/VH/VHP5-A/VHP523Q.Seq.d/
ATTGCTGAAGTTTATTGGGATCGTGAATTACATTCAATCATTTCAGGTTTAGTGCCCTAT
TCTTCTGCAATTCCAAAAGCATTGGCATCGGTTTTCGATAAAGGTATCAGTAAAGATGGT
ATTGTTTTCGATTTAAGACAACGTCAATCAGTAAAAGCACTCTATGATTATTATGAAATG
CGTATGTCAACTTATCCACAAAATTCAATTATTCTCTATCCATCATCGACTCATCACTCT
CCATATCCATTACAAATTTACAATGCTGGTGCGTGGGCTGCCGTCGATCTTATGTATTTC
CTACCGGAAATTCCAATTACCTATATTGGTGAACAAAATGGTTGGTACTATCATGTTGAT
ATTCATACAAGTCGTGTAAAAGTTGGTATGTCTGCAACACCCTATCAATTACAATATCCT
CAAATTCGTGGTCATTATGCTCATCGGGTGGCACTTAGAAAATCTCATGCTTTATTACGT
CGTGGTGGTATGATTCCATTGTTATGTTACCATGCAACCGGATGGCATGATCGTGTATTT
GGTTTCGCACGTTTCTCTGGTAATGAAGTTGCAATCATTGCAATCAACTTTGACAATACC
GACACGGAATTCTATGTCGATTGTTCACCATTGGCXXXXXXXXXXCCGATCATTGGAGTG
CAAAGGCAGAGCTACAAAAGAAATATTTTGGATTGGTCGATAAATCAATACCAGTACTTA
GTTTTGTTGGTAGAATTGTATTACAAAAGGGTGTTCATTTAATTTTGAATGCCGTTAGAG
AATTGATTGGTCATTATCAAGGTAAAATTCAAATTTTAATTGGTGGTATGGCAAATATGA
AAGATCCCTATGCAAGTAGTTGTGCTTGGTCAATGCAAGCATTGTGTAAACAATTCCCAC
AATCATTTTGGGCTGACCCTGATTCATTCTTTTCAGATGGTCCATTGGTTAATTTAGGCT
CAGATTTTGGTTTAATGCCTTCATTATTTGAACCAAGTGGTGTTGTACAACAAGAATACT
TTGTTGCTGGTACACCAGTTATCGCTTTCAAAACTGGTGGTCTAAAAGATACAGTTTTCG
AATATAATACCAACACTGAAACTGGAAATGGTTTCACTTTTGAAGCTCATAAACATACAG
ATTACGTTCAAGCCGTTCATCGTGCCATCAATATTTTCAATAACACTCATCATTATGAAA
AAATTCGTAAATGTGCTGAAGAATCAGTTTTAGATATGTCTGTTGTTGCTGAAGCTTGGG
CAAAAGAATTCTCAAGAATGAGAAGATCAATTTGGTCAACCAATCATCAATTACAAAGAC
TTAATGAAAAACAATCTACTGAGGTTATTGATAATAGAGATAATCATTCATCATCAACTC
AACCGTTAAATTCTCAAATTAAACAACCACCACAACAA
sequence update 2002.10.25
Translated Amino Acid sequence
IAEVYWDRELHSIISGLVPYSSAIPKALASVFDKGISKDGIVFDLRQRQSVKALYDYYEM
RMSTYPQNSIILYPSSTHHSPYPLQIYNAGAWAAVDLMYFLPEIPITYIGEQNGWYYHVD
IHTSRVKVGMSATPYQLQYPQIRGHYAHRVALRKSHALLRRGGMIPLLCYHATGWHDRVF
GFARFSGNEVAIIAINFDNTDTEFYVDCSPL---

---DHWSAKAELQKKYFGLVDKSIPVLSFVGRIVLQKGVHLILNAVRELIGHYQGKIQIL
IGGMANMKDPYASSCAWSMQALCKQFPQSFWADPDSFFSDGPLVNLGSDFGLMPSLFEPS
GVVQQEYFVAGTPVIAFKTGGLKDTVFEYNTNTETGNGFTFEAHKHTDYVQAVHRAINIF
NNTHHYEKIRKCAEESVLDMSVVAEAWAKEFSRMRRSIWSTNHQLQRLNEKQSTEVIDNR
DNHSSSTQPLNSQIKQPPQQ


Translated Amino Acid sequence (All Frames)
Frame A:
IAEVYWDRELHSIISGLVPYSSAIPKALASVFDKGISKDGIVFDLRQRQSVKALYDYYEM
RMSTYPQNSIILYPSSTHHSPYPLQIYNAGAWAAVDLMYFLPEIPITYIGEQNGWYYHVD
IHTSRVKVGMSATPYQLQYPQIRGHYAHRVALRKSHALLRRGGMIPLLCYHATGWHDRVF
GFARFSGNEVAIIAINFDNTDTEFYVDCSPL---

---piigvqrqsykrnildwsinqyqylvllvelyykrvfi*f*mplen*lviikvkfkf
*lvvwqi*kipmqvvvlgqckhcvnnshnhfgltlihsfqmvhwli*aqilv*clhylnq
vvlynkntlllvhqlslsklvv*kiqfsniiptlklemvsllkliniqitfkpfivpsif
sitliimkkfvnvlknqf*icllllklgqknsqe*edqfgqpiinykdlmknnllrllii
eiiihhqlnr*ilklnnhhn

Frame B:
llkfigivnyiqsfqv*cpillqfqkhwhrfsikvsvkmvlfsi*dnvnq*khsmiimkc
vcqlihkiqlfsihhrlitlhihykftmlvrglpsilcisyrkfqlpilvnkmvgtimli
fiqvv*klvclqhpinynilkfvvimligwhlenlmlyyvvvv*fhcyvtmqpdgmivyl
vshvslvmklqslqstltiptrnsmsivhhw---

---rsleckgratkeifwigr*intst*fcw*ncitkgcsfnfecr*ridwslsr*nsnf
nwwygkyerslck*lclvnasiv*tiptiilg*p*filfrwsig*frlrfwfnafii*tk
wccttrilccwytsyrfqnwwskrysfri*yqh*nwkwfhf*ss*tyrlrssrsschqyf
q*hssl*kns*mc*risfryvccc*slgkrilknekinlvnqssitkt**ktiy*gy***
r*sfiinstvkfsn*ttttt

Frame C:
c*sllgs*itfnhfrfsalffcnsksigigfr*ryq*rwycfrfkttsiskstl*ll*na
yvnlstkfnyslsiidsslsisitnlqcwcvgcrrsyvfptgnsnylyw*tkwlvlsc*y
syksckswyvcntlsitissnswslcssggt*kiscfitswwydsivmlpcnrma*sciw
frtflw**scnhcnql*qyrhgilcrlftig---

---DHWSAKAELQKKYFGLVDKSIPVLSFVGRIVLQKGVHLILNAVRELIGHYQGKIQIL
IGGMANMKDPYASSCAWSMQALCKQFPQSFWADPDSFFSDGPLVNLGSDFGLMPSLFEPS
GVVQQEYFVAGTPVIAFKTGGLKDTVFEYNTNTETGNGFTFEAHKHTDYVQAVHRAINIF
NNTHHYEKIRKCAEESVLDMSVVAEAWAKEFSRMRRSIWSTNHQLQRLNEKQSTEVIDNR
DNHSSSTQPLNSQIKQPPQQ

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP523 (VHP523Q) /CSM/VH/VHP5-A/VHP523Q.Seq.d/ 2752 0.0
VHE312 (VHE312Q) /CSM/VH/VHE3-A/VHE312Q.Seq.d/ 1532 0.0
VHB311 (VHB311Q) /CSM/VH/VHB3-A/VHB311Q.Seq.d/ 1532 0.0
VHA879 (VHA879Q) /CSM/VH/VHA8-D/VHA879Q.Seq.d/ 1532 0.0
AHH349 (AHH349Q) /CSM/AH/AHH3-C/AHH349Q.Seq.d/ 1532 0.0
AFG470 (AFG470Q) /CSM/AF/AFG4-C/AFG470Q.Seq.d/ 1532 0.0
AHQ467 (AHQ467Q) /CSM/AH/AHQ4-C/AHQ467Q.Seq.d/ 1530 0.0
AHE721 (AHE721Q) /CSM/AH/AHE7-A/AHE721Q.Seq.d/ 1530 0.0
VHC850 (VHC850Q) /CSM/VH/VHC8-C/VHC850Q.Seq.d/ 1520 0.0
VHP813 (VHP813Q) /CSM/VH/VHP8-A/VHP813Q.Seq.d/ 1518 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 1532 0.0 1
(BJ446262) Dictyostelium discoideum cDNA clone:ddv62m05, 3' ... 1532 0.0 1
(BJ438989) Dictyostelium discoideum cDNA clone:ddv39h03, 3' ... 1532 0.0 1
(BJ437058) Dictyostelium discoideum cDNA clone:ddv33f03, 3' ... 1532 0.0 1
(BJ437017) Dictyostelium discoideum cDNA clone:ddv32n20, 3' ... 1532 0.0 1
(BJ352055) Dictyostelium discoideum cDNA clone:dda45b13, 3' ... 1532 0.0 1
(BJ342368) Dictyostelium discoideum cDNA clone:dda13l18, 3' ... 1532 0.0 1
(BJ357440) Dictyostelium discoideum cDNA clone:dda63f18, 3' ... 1530 0.0 1
(BJ350518) Dictyostelium discoideum cDNA clone:dda40j05, 3' ... 1530 0.0 1
(BJ438150) Dictyostelium discoideum cDNA clone:ddv36d14, 3' ... 1520 0.0 1
dna update 2008.12.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116979_75(AC116979|pid:none) Dictyostelium discoideum chromoso... 488 e-136
CP001098_688(CP001098|pid:none) Halothermothrix orenii H 168, co... 77 2e-12
(Q3JD12) RecName: Full=Glycogen synthase 2; EC=2.4.1.21... 76 3e-12
(B2V5P9) RecName: Full=Glycogen synthase; EC=2.4.1.21; ... 72 5e-11
AB274917_1(AB274917|pid:none) Porphyridium purpureum mRNA for gr... 71 1e-10
(Q31IB5) RecName: Full=Glycogen synthase; EC=2.4.1.21; ... 69 5e-10
CP001186_4897(CP001186|pid:none) Bacillus cereus G9842, complete... 68 9e-10
(B7HBC4) RecName: Full=Glycogen synthase; EC=2.4.1.21; ... 67 1e-09
AY123127_1(AY123127|pid:none) Griffithsia japonica glycogen synt... 67 1e-09
AB232549_1(AB232549|pid:none) Parachlorella kessleri CkGBSS mRNA... 67 2e-09
protein update 2009. 7.21
PSORT

psg: 0.75 gvh: 0.59 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi

>> prediction for VHP523 is cyt

5' end seq. ID VHP523F
5' end seq.
>VHP523F.Seq
ATTGCTGAAGTTTATTGGGATCGTGAATTACATTCAATCATTTCAGGTTTAGTGCCCTAT
TCTTCTGCAATTCCAAAAGCATTGGCATCGGTTTTCGATAAAGGTATCAGTAAAGATGGT
ATTGTTTTCGATTTAAGACAACGTCAATCAGTAAAAGCACTCTATGATTATTATGAAATG
CGTATGTCAACTTATCCACAAAATTCAATTATTCTCTATCCATCATCGACTCATCACTCT
CCATATCCATTACAAATTTACAATGCTGGTGCGTGGGCTGCCGTCGATCTTATGTATTTC
CTACCGGAAATTCCAATTACCTATATTGGTGAACAAAATGGTTGGTACTATCATGTTGAT
ATTCATACAAGTCGTGTAAAAGTTGGTATGTCTGCAACACCCTATCAATTACAATATCCT
CAAATTCGTGGTCATTATGCTCATCGGGTGGCACTTAGAAAATCTCATGCTTTATTACGT
CGTGGTGGTATGATTCCATTGTTATGTTACCATGCAACCGGATGGCATGATCGTGTATTT
GGTTTCGCACGTTTCTCTGGTAATGAAGTTGCAATCATTGCAATCAACTTTGACAATACC
GACACGGAATTCTATGTCGATTGTTCACCATTGGCNNNNNNNNNN
Length of 5' end seq. 645
3' end seq. ID VHP523Z
3' end seq.
>VHP523Z.Seq
NNNNNNNNNNCCGATCATTGGAGTGCAAAGGCAGAGCTACAAAAGAAATATTTTGGATTG
GTCGATAAATCAATACCAGTACTTAGTTTTGTTGGTAGAATTGTATTACAAAAGGGTGTT
CATTTAATTTTGAATGCCGTTAGAGAATTGATTGGTCATTATCAAGGTAAAATTCAAATT
TTAATTGGTGGTATGGCAAATATGAAAGATCCCTATGCAAGTAGTTGTGCTTGGTCAATG
CAAGCATTGTGTAAACAATTCCCACAATCATTTTGGGCTGACCCTGATTCATTCTTTTCA
GATGGTCCATTGGTTAATTTAGGCTCAGATTTTGGTTTAATGCCTTCATTATTTGAACCA
AGTGGTGTTGTACAACAAGAATACTTTGTTGCTGGTACACCAGTTATCGCTTTCAAAACT
GGTGGTCTAAAAGATACAGTTTTCGAATATAATACCAACACTGAAACTGGAAATGGTTTC
ACTTTTGAAGCTCATAAACATACAGATTACGTTCAAGCCGTTCATCGTGCCATCAATATT
TTCAATAACACTCATCATTATGAAAAAATTCGTAAATGTGCTGAAGAATCAGTTTTAGAT
ATGTCTGTTGTTGCTGAAGCTTGGGCAAAAGAATTCTCAAGAATGAGAAGATCAATTTGG
TCAACCAATCATCAATTACAAAGACTTAATGAAAAACAATCTACTGAGGTTATTGATAAT
AGAGATAATCATTCATCATCAACTCAACCGTTAAATTCTCAAATTAAACAACCACCACAA
CAA
Length of 3' end seq. 783
Connected seq. ID VHP523P
Connected seq.
>VHP523P.Seq
ATTGCTGAAGTTTATTGGGATCGTGAATTACATTCAATCATTTCAGGTTTAGTGCCCTAT
TCTTCTGCAATTCCAAAAGCATTGGCATCGGTTTTCGATAAAGGTATCAGTAAAGATGGT
ATTGTTTTCGATTTAAGACAACGTCAATCAGTAAAAGCACTCTATGATTATTATGAAATG
CGTATGTCAACTTATCCACAAAATTCAATTATTCTCTATCCATCATCGACTCATCACTCT
CCATATCCATTACAAATTTACAATGCTGGTGCGTGGGCTGCCGTCGATCTTATGTATTTC
CTACCGGAAATTCCAATTACCTATATTGGTGAACAAAATGGTTGGTACTATCATGTTGAT
ATTCATACAAGTCGTGTAAAAGTTGGTATGTCTGCAACACCCTATCAATTACAATATCCT
CAAATTCGTGGTCATTATGCTCATCGGGTGGCACTTAGAAAATCTCATGCTTTATTACGT
CGTGGTGGTATGATTCCATTGTTATGTTACCATGCAACCGGATGGCATGATCGTGTATTT
GGTTTCGCACGTTTCTCTGGTAATGAAGTTGCAATCATTGCAATCAACTTTGACAATACC
GACACGGAATTCTATGTCGATTGTTCACCATTGGC----------CCGATCATTGGAGTG
CAAAGGCAGAGCTACAAAAGAAATATTTTGGATTGGTCGATAAATCAATACCAGTACTTA
GTTTTGTTGGTAGAATTGTATTACAAAAGGGTGTTCATTTAATTTTGAATGCCGTTAGAG
AATTGATTGGTCATTATCAAGGTAAAATTCAAATTTTAATTGGTGGTATGGCAAATATGA
AAGATCCCTATGCAAGTAGTTGTGCTTGGTCAATGCAAGCATTGTGTAAACAATTCCCAC
AATCATTTTGGGCTGACCCTGATTCATTCTTTTCAGATGGTCCATTGGTTAATTTAGGCT
CAGATTTTGGTTTAATGCCTTCATTATTTGAACCAAGTGGTGTTGTACAACAAGAATACT
TTGTTGCTGGTACACCAGTTATCGCTTTCAAAACTGGTGGTCTAAAAGATACAGTTTTCG
AATATAATACCAACACTGAAACTGGAAATGGTTTCACTTTTGAAGCTCATAAACATACAG
ATTACGTTCAAGCCGTTCATCGTGCCATCAATATTTTCAATAACACTCATCATTATGAAA
AAATTCGTAAATGTGCTGAAGAATCAGTTTTAGATATGTCTGTTGTTGCTGAAGCTTGGG
CAAAAGAATTCTCAAGAATGAGAAGATCAATTTGGTCAACCAATCATCAATTACAAAGAC
TTAATGAAAAACAATCTACTGAGGTTATTGATAATAGAGATAATCATTCATCATCAACTC
AACCGTTAAATTCTCAAATTAAACAACCACCACAACAA
Length of connected seq. 1408
Full length Seq ID -
Full length Seq. -
Length of full length seq. -