VHP496 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHP496
Library	VH (Link to library)
Clone ID	VHP496 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15962-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHP4-D/VHP496Q.Seq.d/
Representative seq. ID	VHP496P (Link to Original site)
Representative DNA sequence	>VHP496 (VHP496Q) /CSM/VH/VHP4-D/VHP496Q.Seq.d/ ATAATAATAATTTAGTAAAGTAATAAAATGAGTTTTATTGATCAAATCCCAAAAAGTTTT ATTCCAAAGTTAGATGACTTTAGAAATAAATTAAAACCACTCGAAGGTTCAGTTGATTAT TGTCCAAAGGCTTGGTTTTTAGGTCCAAAAGCAGAAAATTCTGAATTATTAATGACTCTC CTCAAAAGAGCAATTGATGCTCATCTTCAATCAAGAATCAATTTCCACAAAGAAGATGCA CCAATTTTCGAAGATTCTTACAAAAAAGATCCTGTATACCTCAATGCAGCAAAAGACATG ACCAAAAAAGTTGATGAAGTTTTAAATTTCTTAAAACACTCTCTTCCATATTCATCCTTT AGATATCAAGGACATATGACATCTGATGTTACTATTGCTGGTGTAATTGGTGCCACTGCT ACTATTTTATACAATCCAAACAATGTAACAGTTCAAGCAAGTCCAGTAACCACATTTATT GAAATGGCAGTTAGTAATGATCTTGCCCGTATGGTTGGTTGGGAATTTCCAGAAAAAATT CCAAAGTTTAATAACAGACATGAAAAGAAACTTTTTGAAGATAAXXXXXXXXXXAGGCTC AAAAGCTGGTGCCAATGCAGTTGCTGCTTATTTGAGCCATTCAATTATGCGTACATCAAA ATCTGGTTATGGTATGATCTTAAAGAGATGTTTATTAAGTACAAGACTCTTCTACTTGAG ATTATTATGGTTATGTGGTGATAATGATCAATTCAAAGTTGTTGGTGTACCAATTGAACC ATCTAAGGAAACCCTCGATAATCTCAAATCAAGATTATACGATGCCAATGGTCAAATGAA GAGTGTTGATACAATTTGTCAAGATCAACAACTCGTCGTTGATTTAGCTGAAGTTGGACC AGATCAAAATATCGTTTGTTTTGGTATTAATTTCAAGGATGCCAATGGTAAGTGGAATAC TGATTACAACAAATACTGTGATGTTAATAATCAAATCTATGAAAGATTTGATTATAAAAA AGAAGTTGGTATGGCTCAATTTGATTTAATTTTCTCAAATACCGCTTTCAACGATCAGTA TGGTCAAGTATTCCAACAAAGTCTTGCCCAAAGATTTGGTCTCACTACCAATGTTCCAGC TTTTGGTAGTAATAAATTCCAATTACCAGTTTTAAGATCAACTGTTATGGATGTCTTTGC TAACGAAACCACTAAAGGTTCATTCTTTGATGTTACAATGCCATTGTTCAAATCAGAATG CGCTAAAATTGTTGCTGCATTTGTTAACGCTTCCAAGGCTTCAAAACCAACTCTTTAAAT TTTAAATTTAATCAAAATAATAAAAAATATATTTTTTATTTATTCATTCATTGTATTTTT TTAAATTTTAAAA
sequence update	2002.10.25
Translated Amino Acid sequence	iiii*SNKMSFIDQIPKSFIPKLDDFRNKLKPLEGSVDYCPKAWFLGPKAENSELLMTL LKRAIDAHLQSRINFHKEDAPIFEDSYKKDPVYLNAAKDMTKKVDEVLNFLKHSLPYSSF RYQGHMTSDVTIAGVIGATATILYNPNNVTVQASPVTTFIEMAVSNDLARMVGWEFPEKI PKFNNRHEKKLFED--- ---GSKAGANAVAAYLSHSIMRTSKSGYGMILKRCLLSTRLFYLRLLWLCGDNDQFKVVG VPIEPSKETLDNLKSRLYDANGQMKSVDTICQDQQLVVDLAEVGPDQNIVCFGINFKDAN GKWNTDYNKYCDVNNQIYERFDYKKEVGMAQFDLIFSNTAFNDQYGQVFQQSLAQRFGLT TNVPAFGSNKFQLPVLRSTVMDVFANETTKGSFFDVTMPLFKSECAKIVAAFVNASKASK PTLilnlikiikniffiysfivff*ilk
Translated Amino Acid sequence (All Frames)	Frame A: iiiiSNKMSFIDQIPKSFIPKLDDFRNKLKPLEGSVDYCPKAWFLGPKAENSELLMTL LKRAIDAHLQSRINFHKEDAPIFEDSYKKDPVYLNAAKDMTKKVDEVLNFLKHSLPYSSF RYQGHMTSDVTIAGVIGATATILYNPNNVTVQASPVTTFIEMAVSNDLARMVGWEFPEKI PKFNNRHEKKLFED--- ---rlkswcqcscclfepfnyayikiwlwydlkemfikyktllleiimvmwsiqscw ctntignprsqikiircqwsneecynlsrsttrrfsswtrskyrlfwyfqgcq wveylqqilcsnlkilkrswygsifnflkyrfqrsvwssiptkscpkiwsh yqcssfw*ipitsfkincygclcrnhrfilcynaivqirmrncccicrfqgfk tnslnfkfnqnnkkyifylfihciflnfk Frame B: **fskvikvlliksqkvlfqsmtleinnhskvqliivqrlgfvqkqkilnyls skeqlmlifnqesistkkmhqfskiltkkilytsmqqktpkklmkfisntlfhihpl dikdihlmllllvlvplllfytiqtmqfkqvqphllkwqlvmilpvwlvgnfqkkf qslitdmkrnflki--- ---GSKAGANAVAAYLSHSIMRTSKSGYGMILKRCLLSTRLFYLRLLWLCGDNDQFKVVG VPIEPSKETLDNLKSRLYDANGQMKSVDTICQDQQLVVDLAEVGPDQNIVCFGINFKDAN GKWNTDYNKYCDVNNQIYERFDYKKEVGMAQFDLIFSNTAFNDQYGQVFQQSLAQRFGLT TNVPAFGSNKFQLPVLRSTVMDVFANETTKGSFFDVTMPLFKSECAKIVAAFVNASKASK PTLilnlikiikniffiysfivffilk Frame C: nnnlvk*nefysnpkkfyskvrlkikttrrfsllskglvfrsksrkfiindsp qksncsssiknqfpqrrctnfrrflqkrscipqcskrhdqks*sfkflktlssifil isrtydicyycwcnwchcyyfiqskqcnssskssnhiyngs*scpygwlgisrkns kvqtketfr--- ---aqklvpmqllliaiqlcvhqnlvmvsrdvyvqdsstdyygyvviminskllv yqlnhlrkpsiisnqdytmpmvkrvliqfvkinnsslilkldqikisfvlvlisrmpm vsgilittntvmliiksmkdliikkklvwlnlifsqiplstismvkysnkvlpkdlvsl pmfqllvvinsnyqfdqllwmslltkplkvhslmlqchcsnqnalklllhlltlprlqn qlfkfisk*kiyflfihslyffkf
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHP496 (VHP496Q) /CSM/VH/VHP4-D/VHP496Q.Seq.d/ 2543 0.0 VHQ102 (VHQ102Q) /CSM/VH/VHQ1-A/VHQ102Q.Seq.d/ 1425 0.0 VHL430 (VHL430Q) /CSM/VH/VHL4-B/VHL430Q.Seq.d/ 1425 0.0 VHD271 (VHD271Q) /CSM/VH/VHD2-C/VHD271Q.Seq.d/ 1425 0.0 VHM685 (VHM685Q) /CSM/VH/VHM6-D/VHM685Q.Seq.d/ 1417 0.0 VHB349 (VHB349Q) /CSM/VH/VHB3-C/VHB349Q.Seq.d/ 1417 0.0 VHH507 (VHH507Q) /CSM/VH/VHH5-A/VHH507Q.Seq.d/ 1411 0.0 VHP458 (VHP458Q) /CSM/VH/VHP4-C/VHP458Q.Seq.d/ 1392 0.0 VHO479 (VHO479Q) /CSM/VH/VHO4-D/VHO479Q.Seq.d/ 1382 0.0 VHL512 (VHL512Q) /CSM/VH/VHL5-A/VHL512Q.Seq.d/ 1378 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446531) Dictyostelium discoideum cDNA clone:ddv63c01, 3' ... 1425 0.0 1 (BJ446197) Dictyostelium discoideum cDNA clone:ddv61p24, 3' ... 1425 0.0 1 (BJ443582) Dictyostelium discoideum cDNA clone:ddv53l08, 3' ... 1425 0.0 1 (BJ438356) Dictyostelium discoideum cDNA clone:ddv37m18, 3' ... 1425 0.0 1 (BJ444593) Dictyostelium discoideum cDNA clone:ddv56i22, 3' ... 1417 0.0 1 (BJ437191) Dictyostelium discoideum cDNA clone:ddv33b13, 3' ... 1417 0.0 1 (BJ445580) Dictyostelium discoideum cDNA clone:ddv59n20, 3' ... 1382 0.0 1 (BJ443772) Dictyostelium discoideum cDNA clone:ddv54g03, 3' ... 1378 0.0 1 (BJ441643) Dictyostelium discoideum cDNA clone:ddv47j11, 3' ... 1368 0.0 1 (BJ444794) Dictyostelium discoideum cDNA clone:ddv57a13, 3' ... 1354 0.0 1
dna update	2008.12.18
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CP000113_3785(CP000113\|pid:none) Myxococcus xanthus DK 1622, com... 122 3e-26 CP001291_2208(CP001291\|pid:none) Cyanothece sp. PCC 7424, comple... 121 7e-26 CP000155_3327(CP000155\|pid:none) Hahella chejuensis KCTC 2396, c... 115 5e-24 CP000559_1042(CP000559\|pid:none) Methanocorpusculum labreanum Z,... 96 4e-18 CP000159_814(CP000159\|pid:none) Salinibacter ruber DSM 13855, co... 85 5e-15 AB086651_1(AB086651\|pid:none) Lactobacillus curvatus tdc gene fo... 84 1e-14 AB059363_2(AB059363\|pid:none) Tetragenococcus halophilus tnp, td... 82 4e-14 BX571866_283(BX571866\|pid:none) Photorhabdus luminescens subsp. ... 81 8e-14 AB086652_1(AB086652\|pid:none) Lactobacillus curvatus tdc gene fo... 78 7e-13 CP000416_2086(CP000416\|pid:none) Lactobacillus brevis ATCC 367, ... 76 3e-12
protein update	2009. 7.21
PSORT	psg: 0.73 gvh: 0.52 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 60.0 %: cytoplasmic 36.0 %: nuclear 4.0 %: peroxisomal >> prediction for VHP496 is cyt
5' end seq. ID	VHP496F
5' end seq.	>VHP496F.Seq ATAATAATAATTTAGTAAAGTAATAAAATGAGTTTTATTGATCAAATCCCAAAAAGTTTT ATTCCAAAGTTAGATGACTTTAGAAATAAATTAAAACCACTCGAAGGTTCAGTTGATTAT TGTCCAAAGGCTTGGTTTTTAGGTCCAAAAGCAGAAAATTCTGAATTATTAATGACTCTC CTCAAAAGAGCAATTGATGCTCATCTTCAATCAAGAATCAATTTCCACAAAGAAGATGCA CCAATTTTCGAAGATTCTTACAAAAAAGATCCTGTATACCTCAATGCAGCAAAAGACATG ACCAAAAAAGTTGATGAAGTTTTAAATTTCTTAAAACACTCTCTTCCATATTCATCCTTT AGATATCAAGGACATATGACATCTGATGTTACTATTGCTGGTGTAATTGGTGCCACTGCT ACTATTTTATACAATCCAAACAATGTAACAGTTCAAGCAAGTCCAGTAACCACATTTATT GAAATGGCAGTTAGTAATGATCTTGCCCGTATGGTTGGTTGGGAATTTCCAGAAAAAATT CCAAAGTTTAATAACAGACATGAAAAGAAACTTTTTGAAGATAANNNNNNNNNN
Length of 5' end seq.	594
3' end seq. ID	VHP496Z
3' end seq.	>VHP496Z.Seq NNNNNNNNNNAGGCTCAAAAGCTGGTGCCAATGCAGTTGCTGCTTATTTGAGCCATTCAA TTATGCGTACATCAAAATCTGGTTATGGTATGATCTTAAAGAGATGTTTATTAAGTACAA GACTCTTCTACTTGAGATTATTATGGTTATGTGGTGATAATGATCAATTCAAAGTTGTTG GTGTACCAATTGAACCATCTAAGGAAACCCTCGATAATCTCAAATCAAGATTATACGATG CCAATGGTCAAATGAAGAGTGTTGATACAATTTGTCAAGATCAACAACTCGTCGTTGATT TAGCTGAAGTTGGACCAGATCAAAATATCGTTTGTTTTGGTATTAATTTCAAGGATGCCA ATGGTAAGTGGAATACTGATTACAACAAATACTGTGATGTTAATAATCAAATCTATGAAA GATTTGATTATAAAAAAGAAGTTGGTATGGCTCAATTTGATTTAATTTTCTCAAATACCG CTTTCAACGATCAGTATGGTCAAGTATTCCAACAAAGTCTTGCCCAAAGATTTGGTCTCA CTACCAATGTTCCAGCTTTTGGTAGTAATAAATTCCAATTACCAGTTTTAAGATCAACTG TTATGGATGTCTTTGCTAACGAAACCACTAAAGGTTCATTCTTTGATGTTACAATGCCAT TGTTCAAATCAGAATGCGCTAAAATTGTTGCTGCATTTGTTAACGCTTCCAAGGCTTCAA AACCAACTCTTTAAATTTTAAATTTAATCAAAATAATAAAAAATATATTTTTTATTTATT CATTCATTGTATTTTTTTAAATTTTAAAA
Length of 3' end seq.	809
Connected seq. ID	VHP496P
Connected seq.	>VHP496P.Seq ATAATAATAATTTAGTAAAGTAATAAAATGAGTTTTATTGATCAAATCCCAAAAAGTTTT ATTCCAAAGTTAGATGACTTTAGAAATAAATTAAAACCACTCGAAGGTTCAGTTGATTAT TGTCCAAAGGCTTGGTTTTTAGGTCCAAAAGCAGAAAATTCTGAATTATTAATGACTCTC CTCAAAAGAGCAATTGATGCTCATCTTCAATCAAGAATCAATTTCCACAAAGAAGATGCA CCAATTTTCGAAGATTCTTACAAAAAAGATCCTGTATACCTCAATGCAGCAAAAGACATG ACCAAAAAAGTTGATGAAGTTTTAAATTTCTTAAAACACTCTCTTCCATATTCATCCTTT AGATATCAAGGACATATGACATCTGATGTTACTATTGCTGGTGTAATTGGTGCCACTGCT ACTATTTTATACAATCCAAACAATGTAACAGTTCAAGCAAGTCCAGTAACCACATTTATT GAAATGGCAGTTAGTAATGATCTTGCCCGTATGGTTGGTTGGGAATTTCCAGAAAAAATT CCAAAGTTTAATAACAGACATGAAAAGAAACTTTTTGAAGATAA----------AGGCTC AAAAGCTGGTGCCAATGCAGTTGCTGCTTATTTGAGCCATTCAATTATGCGTACATCAAA ATCTGGTTATGGTATGATCTTAAAGAGATGTTTATTAAGTACAAGACTCTTCTACTTGAG ATTATTATGGTTATGTGGTGATAATGATCAATTCAAAGTTGTTGGTGTACCAATTGAACC ATCTAAGGAAACCCTCGATAATCTCAAATCAAGATTATACGATGCCAATGGTCAAATGAA GAGTGTTGATACAATTTGTCAAGATCAACAACTCGTCGTTGATTTAGCTGAAGTTGGACC AGATCAAAATATCGTTTGTTTTGGTATTAATTTCAAGGATGCCAATGGTAAGTGGAATAC TGATTACAACAAATACTGTGATGTTAATAATCAAATCTATGAAAGATTTGATTATAAAAA AGAAGTTGGTATGGCTCAATTTGATTTAATTTTCTCAAATACCGCTTTCAACGATCAGTA TGGTCAAGTATTCCAACAAAGTCTTGCCCAAAGATTTGGTCTCACTACCAATGTTCCAGC TTTTGGTAGTAATAAATTCCAATTACCAGTTTTAAGATCAACTGTTATGGATGTCTTTGC TAACGAAACCACTAAAGGTTCATTCTTTGATGTTACAATGCCATTGTTCAAATCAGAATG CGCTAAAATTGTTGCTGCATTTGTTAACGCTTCCAAGGCTTCAAAACCAACTCTTTAAAT TTTAAATTTAATCAAAATAATAAAAAATATATTTTTTATTTATTCATTCATTGTATTTTT TTAAATTTTAAAA
Length of connected seq.	1383
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas