VHP478 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHP478
Library	VH (Link to library)
Clone ID	VHP478 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16260-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHP4-D/VHP478Q.Seq.d/
Representative seq. ID	VHP478P (Link to Original site)
Representative DNA sequence	>VHP478 (VHP478Q) /CSM/VH/VHP4-D/VHP478Q.Seq.d/ AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCXXXXXXXXXXATCTCATCCAAAGA TGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCACGAATGGGATAAAAATGATGC CATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCAC CAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGC CACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGA TGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCG TCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTT AGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCG TAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGC TCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGG TCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGA TAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAAT CCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTGNAGTTTT CAAA
sequence update	2002.10.25
Translated Amino Acid sequence	LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFRRAIESVNVIVGNTEDKEFGDVTVS--- ---ISSKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDS FVGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASP TLLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTA DLRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLt ivalxvfk
Translated Amino Acid sequence (All Frames)	Frame A: nsrvqkkstkwlisqsikfvplwtvvkiseicllllmsitvkplyqilskelvllpik flvidichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnfsilsipqvtlis vqkllpsvllmvlslsiaskvfaykpklyyvkpslnvsnqsysstksivsynsntl kklislsvellnpsmsllvtlkirnsvmslyp--- ---ISSKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDS FVGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASP TLLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTA DLRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLt ivalxvfk Frame B: tleckkskvqngfhnrsnschygpskyqkyvcycscrsrnhfirffnpkswyycrs fwyeiyvmsctrawyhhificitslrnakgrqitswlyftrifnqsyrfprsrfq frsnccppcywcfsryrlrrrclrtnrncitssrrtyqtslirqqsrsflirtpikh rslslfpsyirqchcwhrgirchci--- ---shpkmiqklvltislittngikmmptfglsvqkvtvpisssmspkvfnimklkil slvlsngppkkvlfvmktevsvsifmmspstlmpstevvvkssqllvvysmllnlppq lsnqstkllpqktllvvftlysivvevlllvknvvsvphyslskliyqynpsvspl iyvptlpvklshnvssiiglqlvlstkirkplkslpperekvpqksqiltnstknskq fkshlxfs Frame C: LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFRRAIESVNVIVGNTEDKEFGDVTVS--- ---liqrskssclsr*prmgkchehlvfrsrrrcqsprqchqrcsifenrff rwcfpmghqrrccl*kherypfqslchpphchpqrwwsnhpncssctlccinclpn slrtnllsrnycprkrywwyllctqssrycywrtsyrfpiilcqssftsirilrfhr* ftfphcrssfptmclrslgfnwccqqreshsrfshqkekrfsprnprs*qiprktlnn lsrtxsfq
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHP478 (VHP478Q) /CSM/VH/VHP4-D/VHP478Q.Seq.d/ 2639 0.0 VHO715 (VHO715Q) /CSM/VH/VHO7-A/VHO715Q.Seq.d/ 1455 0.0 VHD205 (VHD205Q) /CSM/VH/VHD2-A/VHD205Q.Seq.d/ 1455 0.0 VHA554 (VHA554Q) /CSM/VH/VHA5-C/VHA554Q.Seq.d/ 1451 0.0 VHP402 (VHP402Q) /CSM/VH/VHP4-A/VHP402Q.Seq.d/ 1449 0.0 VHK634 (VHK634Q) /CSM/VH/VHK6-B/VHK634Q.Seq.d/ 1449 0.0 VHJ293 (VHJ293Q) /CSM/VH/VHJ2-D/VHJ293Q.Seq.d/ 1449 0.0 VHH836 (VHH836Q) /CSM/VH/VHH8-B/VHH836Q.Seq.d/ 1449 0.0 VHA405 (VHA405Q) /CSM/VH/VHA4-A/VHA405Q.Seq.d/ 1449 0.0 CHM484 (CHM484Q) /CSM/CH/CHM4-D/CHM484Q.Seq.d/ 1449 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446177) Dictyostelium discoideum cDNA clone:ddv61l20, 3' ... 1457 0.0 1 (BJ445650) Dictyostelium discoideum cDNA clone:ddv60n03, 3' ... 1455 0.0 1 (BJ438496) Dictyostelium discoideum cDNA clone:ddv37i02, 3' ... 1455 0.0 1 (BJ436919) Dictyostelium discoideum cDNA clone:ddv32k13, 3' ... 1451 0.0 1 (BJ445910) Dictyostelium discoideum cDNA clone:ddv61d02, 3' ... 1449 0.0 1 (BJ443220) Dictyostelium discoideum cDNA clone:ddv52c10, 3' ... 1449 0.0 1 (BJ442433) Dictyostelium discoideum cDNA clone:ddv49i24, 3' ... 1449 0.0 1 (BJ441319) Dictyostelium discoideum cDNA clone:ddv46h10, 3' ... 1449 0.0 1 (BJ436418) Dictyostelium discoideum cDNA clone:ddv31j02, 3' ... 1449 0.0 1 (BJ383092) Dictyostelium discoideum cDNA clone:ddc46h22, 3' ... 1449 0.0 1
dna update	2008.12.18
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AY391422_1(AY391422\|pid:none) Danio rerio eukaryotic translation... 304 4e-81 AY069933_1(AY069933\|pid:none) Rana sylvatica eukaryotic translat... 303 1e-80 BC089730_1(BC089730\|pid:none) Xenopus tropicalis MGC108369 prote... 299 1e-79 BT045031_1(BT045031\|pid:none) Salmo salar clone ssal-rgf-510-120... 298 3e-79 BC060707_1(BC060707\|pid:none) Mus musculus eukaryotic translatio... 298 4e-79 AK161993_1(AK161993\|pid:none) Mus musculus 12 days embryo male w... 298 4e-79 AK032997_1(AK032997\|pid:none) Mus musculus 12 days embryo male w... 298 4e-79 (P05197) RecName: Full=Elongation factor 2; Short=EF-2;... 298 4e-79 AJ278147_1(AJ278147\|pid:none) Rattus norvegicus partial Ef-2 gen... 298 4e-79 BT071866_1(BT071866\|pid:none) Salmo salar clone ssal-rgf-501-088... 298 4e-79
protein update	2009. 7.21
PSORT	psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00 nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: cytoplasmic 36.0 %: nuclear 4.0 %: extracellular, including cell wall 4.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for VHP478 is cyt
5' end seq. ID	VHP478F
5' end seq.	>VHP478F.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCNNNNNNNNNN
Length of 5' end seq.	646
3' end seq. ID	VHP478Z
3' end seq.	>VHP478Z.Seq NNNNNNNNNNATCTCATCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAA CCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGG TGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTC TTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAG AGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGG TGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCC AACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGG TATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGG TTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGC TGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGC TTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAA GAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAAC AATTTAAGTCGCACTTGNAGTTTTCAAA
Length of 3' end seq.	748
Connected seq. ID	VHP478P
Connected seq.	>VHP478P.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCC----------ATCTCATCCAAAGA TGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCACGAATGGGATAAAAATGATGC CATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCAC CAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGC CACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGA TGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCG TCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTT AGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCG TAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGC TCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGG TCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGA TAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAAT CCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTGNAGTTTT CAAA
Length of connected seq.	1374
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas