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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP470
Library VH
(Link to library)
Clone ID VHP470
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13591-1
Original site URL
Representative seq. ID VHP470P
(Link to Original site)
Representative DNA sequence 
>VHP470 (VHP470Q) /CSM/VH/VHP4-C/VHP470Q.Seq.d/
ATAAACCATTGTGATATTACAAACATATATTTTTTTAAAATGCCTTTAAACCTTGTTGCT
AGAAAATCATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAAT
GCTTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTT
GATGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATT
AGTAAATGTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCA
AATACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGG
AAGTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATT
ACTGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTA
CCAACTCGTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGXXXX
XXXXXXATTTAATCATCNCNTTTAAATCATTTGTAATATCTCTGATAATGCCATTTCGAT
TCATTAAAGTCCTTCCAGTACCAGGTGTTTCTCATTAGCTGCTAAAATCAATTTGAAAGA
GANCCAAGAGAAATTCGATACCGCTTTTGAAAGAATTAAAGAGGTCACTAAAGTAGATTG
GTCCTATGATGAGCAATCATTGGAAACTGTTTATCCAGCACTTGAAGAAAGAAATAAAGA
AAGAATTGGTGACTTATTCCAAGAGATTATTAAATATGTCGCTGATAATATCGTTAAACG
TTGTAAAGAGGATATGGTTTTAGAAAGTTTCCTCGAAGCAACTTCAAATGCAAAGATTGT
TTTCCGTCACAATGCCAAAGCAAACGGTTATTGGAATTGGAGTTTTGAAAACAATGATTT
AGTAATCACCTTCAAATCAATTTGCAATGTTAGTGATAATGCAAACTTTGATTTCATTAA
AATTTTACCATCACCAGGTGTACTCACTTTAGCCTCTAGAATCAATTTGAGAGAGAATCA
AGAGAAAATCAATGAATCTTTCGAAAAGATTAAAGAAGTCTTGGGTAATGATTGGACTTA
TGATGAATCTTCAATCGAACAAGTTTATCCAAAATTAGAAGAAAATAATAAACCACGTGT
TGGTGATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAATATCGTTAAAAGATGTAA
AGATGATGATATGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAAATTGTAAAATCGTCTT
CCAATTTGTTGAAAAACAAAGTTCTTATTGGGTTTGGAAATTCGATGGTGGTAATTTAGT
CGTATCATTCAAATCAATTTGTAATACTAGGATAATGCAAATTTCAATTTNAAGCTCTCC
TTTAAAATTA
sequence update 2002.10.25
Translated Amino Acid sequence 
INHCDITNIYFFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKV
DEHVKKQLGEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYW
KYAFNGGQLNLLFKKGCNNITEAGNFELYKVIPSEGAYSLPTRLNMKKNQERFELAFE--
-

---LIIXFKSFVISLIMPFRFIKVLPVPGVSH*llksi*krxkrnsipllkelkrslk*i
gpmmsnhwklfiqhlkkeikkelvtyskrllnmsliislnvvkriwf*kvsskqlqmqrl
fsvtmpkqtvigigvlktmi**spsnqfamlvimqtlislkfyhhqvysl*plesi*eri
krksmnlskrlkkswvmiglmmnlqsnkfiqn*kkiinhvlvmsllksfvtsvkislkdv
kmmiwskkvslkqlkivksssnllknkvligfgnsmvvi*syhsnqfvilg*ckfqfxal
l*n
Translated Amino Acid sequence (All Frames) 
Frame A:
INHCDITNIYFFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKV
DEHVKKQLGEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYW
KYAFNGGQLNLLFKKGCNNITEAGNFELYKVIPSEGAYSLPTRLNMKKNQERFELAFE--
-

---i*ssxlnhl*yl**chfdslksfqyqvflisc*nqferxpreiryrf*kn*rgh*sr
lvl**aiignclsst*rkk*rknw*liprdy*icr**yr*tl*rgygfrkfprsnfkckd
cfpsqcqskrllelef*kq*fsnhlqinlqc***ckl*fh*nftitrcthfsl*nqfere
srenq*ifrkd*rslg**ldl**ifnrtslskirrk**ttcw*clc*nhslhqskyr*km
*r**ygqrrfr*snskl*nrlpic*ktkfllgleirww*fsriiqinl*y*dnanfnxkl
sfki

Frame B:
*tivilqtyiflkcl*tlllenh*eimknt*ikhmkkskml*mvkngllnligmpfsikl
mnmlknn*vkyfikiyvqilvnvl*mhqkmn*lknqslmqillkrly*llmkmprihpig
smhlmvvn*ifysrkvviillklvisnyik*fqvkvlivyqlvli*krikkdlnlhsk--
-

---fnhxx*iicnisdnaisih*spsstrcfslaakinlkexqekfdtaferikevtkvd
wsydeqsletvypaleernkerigdlfqeiikyvadnivkrckedmvlesfleatsnaki
vfrhnakangywnwsfenndlvitfksicnvsdnanfdfikilpspgvltlasrinlren
qekinesfekikevlgndwtydessieqvypkleennkprvgdvfaeiiryisqnivkrc
kdddmvkegfveatqnckivfqfvekqssywvwkfdggnlvvsfksicntrimqisixss
plkl

Frame C:
kpl*yykhiff*nafkpcc*kiikr**rtlk*st*rnqkcfkw*rmdy*i*lgchfr*s*
*tc*ktir*sil*kfmsky**myckcikr*in*rinh*ckyc*kdcinc**rcqefille
vci*wwsiksfiqerl**yy*sw*frii*sdsk*rcl*ftnss*yekesrki*tcirk--
-

---LIIXFKSFVISLIMPFRFIKVLPVPGVSH*llksi*krxkrnsipllkelkrslk*i
gpmmsnhwklfiqhlkkeikkelvtyskrllnmsliislnvvkriwf*kvsskqlqmqrl
fsvtmpkqtvigigvlktmi**spsnqfamlvimqtlislkfyhhqvysl*plesi*eri
krksmnlskrlkkswvmiglmmnlqsnkfiqn*kkiinhvlvmsllksfvtsvkislkdv
kmmiwskkvslkqlkivksssnllknkvligfgnsmvvi*syhsnqfvilg*ckfqfxal
l*n
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP470 (VHP470Q) /CSM/VH/VHP4-C/VHP470Q.Seq.d/                       2750   0.0
VFE124 (VFE124Q) /CSM/VF/VFE1-A/VFE124Q.Seq.d/                       1725   0.0
VHP414 (VHP414Q) /CSM/VH/VHP4-A/VHP414Q.Seq.d/                       1697   0.0
VHJ386 (VHJ386Q) /CSM/VH/VHJ3-D/VHJ386Q.Seq.d/                       1683   0.0
VHC741 (VHC741Q) /CSM/VH/VHC7-B/VHC741Q.Seq.d/                       1681   0.0
VHC827 (VHC827Q) /CSM/VH/VHC8-B/VHC827Q.Seq.d/                       1679   0.0
VHJ523 (VHJ523Q) /CSM/VH/VHJ5-A/VHJ523Q.Seq.d/                       1677   0.0
VHA662 (VHA662Q) /CSM/VH/VHA6-C/VHA662Q.Seq.d/                       1677   0.0
VHC489 (VHC489Q) /CSM/VH/VHC4-D/VHC489Q.Seq.d/                       1673   0.0
VHP452 (VHP452Q) /CSM/VH/VHP4-C/VHP452Q.Seq.d/                       1659   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446102) Dictyostelium discoideum cDNA clone:ddv61l18, 3' ...  1768   0.0    1
(BJ430898) Dictyostelium discoideum cDNA clone:ddv9o05, 3' e...  1669   0.0    2
(BJ438064) Dictyostelium discoideum cDNA clone:ddv36b11, 3' ...  1663   0.0    2
(BJ446080) Dictyostelium discoideum cDNA clone:ddv61h14, 3' ...  1618   0.0    3
(BJ445947) Dictyostelium discoideum cDNA clone:ddv61l04, 3' ...  1614   0.0    4
(BJ436922) Dictyostelium discoideum cDNA clone:ddv32k16, 3' ...  1614   0.0    4
(BJ437910) Dictyostelium discoideum cDNA clone:ddv35b24, 3' ...  1600   0.0    5
(BJ438083) Dictyostelium discoideum cDNA clone:ddv36f08, 3' ...  1592   0.0    5
(BJ442697) Dictyostelium discoideum cDNA clone:ddv50o17, 3' ...  1590   0.0    2
(BJ436786) Dictyostelium discoideum cDNA clone:ddv32p06, 3' ...  1572   0.0    1
dna update 2008.12.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117081_29(AC117081|pid:none) Dictyostelium discoideum chromoso...   161   6e-38
AC117081_21(AC117081|pid:none) Dictyostelium discoideum chromoso...   160   8e-38
AL844502_159(AL844502|pid:none) Plasmodium falciparum 3D7 chromo...    44   0.011
(P43040) RecName: Full=Uncharacterized protein MCAP_0005; AltNam...    40   0.16
AE017245_484(AE017245|pid:none) Mycoplasma synoviae 53, complete...    39   0.47
CP001581_3540(CP001581|pid:none) Clostridium botulinum A2 str. K...    37   1.4
CR940352_38(CR940352|pid:none) Theileria annulata strain Ankara ...    37   1.4
CP000383_328(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340...    37   1.8
AY587609_1(AY587609|pid:none) Ascaridia galli lipid binding prot...    37   1.8
AF206632_1(AF206632|pid:none) Plasmodium falciparum isolate FCC1...    37   1.8
protein update 2009. 7.21
PSORT 

 psg: 0.75  gvh: 0.29  alm: 0.29  top: 0.73  tms: 0.07  mit: 0.27  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for VHP470 is cyt
5' end seq. ID VHP470F
5' end seq. 
>VHP470F.Seq
ATAAACCATTGTGATATTACAAACATATATTTTTTTAAAATGCCTTTAAACCTTGTTGCT
AGAAAATCATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAAT
GCTTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTT
GATGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATT
AGTAAATGTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCA
AATACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGG
AAGTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATT
ACTGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTA
CCAACTCGTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGNNNN
NNNNNN
Length of 5' end seq. 546
3' end seq. ID VHP470Z
3' end seq. 
>VHP470Z.Seq
NNNNNNNNNNATTTAATCATCNCNTTTAAATCATTTGTAATATCTCTGATAATGCCATTT
CGATTCATTAAAGTCCTTCCAGTACCAGGTGTTTCTCATTAGCTGCTAAAATCAATTTGA
AAGAGANCCAAGAGAAATTCGATACCGCTTTTGAAAGAATTAAAGAGGTCACTAAAGTAG
ATTGGTCCTATGATGAGCAATCATTGGAAACTGTTTATCCAGCACTTGAAGAAAGAAATA
AAGAAAGAATTGGTGACTTATTCCAAGAGATTATTAAATATGTCGCTGATAATATCGTTA
AACGTTGTAAAGAGGATATGGTTTTAGAAAGTTTCCTCGAAGCAACTTCAAATGCAAAGA
TTGTTTTCCGTCACAATGCCAAAGCAAACGGTTATTGGAATTGGAGTTTTGAAAACAATG
ATTTAGTAATCACCTTCAAATCAATTTGCAATGTTAGTGATAATGCAAACTTTGATTTCA
TTAAAATTTTACCATCACCAGGTGTACTCACTTTAGCCTCTAGAATCAATTTGAGAGAGA
ATCAAGAGAAAATCAATGAATCTTTCGAAAAGATTAAAGAAGTCTTGGGTAATGATTGGA
CTTATGATGAATCTTCAATCGAACAAGTTTATCCAAAATTAGAAGAAAATAATAAACCAC
GTGTTGGTGATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAATATCGTTAAAAGAT
GTAAAGATGATGATATGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAAATTGTAAAATCG
TCTTCCAATTTGTTGAAAAACAAAGTTCTTATTGGGTTTGGAAATTCGATGGTGGTAATT
TAGTCGTATCATTCAAATCAATTTGTAATACTAGGATAATGCAAATTTCAATTTNAAGCT
CTCCTTTAAAATTA
Length of 3' end seq. 914
Connected seq. ID VHP470P
Connected seq. 
>VHP470P.Seq
ATAAACCATTGTGATATTACAAACATATATTTTTTTAAAATGCCTTTAAACCTTGTTGCT
AGAAAATCATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAAT
GCTTTAAATGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTT
GATGAACATGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATT
AGTAAATGTATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCA
AATACTGCTAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGG
AAGTATGCATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATT
ACTGAAGCTGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTA
CCAACTCGTCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAG----
------ATTTAATCATCNCNTTTAAATCATTTGTAATATCTCTGATAATGCCATTTCGAT
TCATTAAAGTCCTTCCAGTACCAGGTGTTTCTCATTAGCTGCTAAAATCAATTTGAAAGA
GANCCAAGAGAAATTCGATACCGCTTTTGAAAGAATTAAAGAGGTCACTAAAGTAGATTG
GTCCTATGATGAGCAATCATTGGAAACTGTTTATCCAGCACTTGAAGAAAGAAATAAAGA
AAGAATTGGTGACTTATTCCAAGAGATTATTAAATATGTCGCTGATAATATCGTTAAACG
TTGTAAAGAGGATATGGTTTTAGAAAGTTTCCTCGAAGCAACTTCAAATGCAAAGATTGT
TTTCCGTCACAATGCCAAAGCAAACGGTTATTGGAATTGGAGTTTTGAAAACAATGATTT
AGTAATCACCTTCAAATCAATTTGCAATGTTAGTGATAATGCAAACTTTGATTTCATTAA
AATTTTACCATCACCAGGTGTACTCACTTTAGCCTCTAGAATCAATTTGAGAGAGAATCA
AGAGAAAATCAATGAATCTTTCGAAAAGATTAAAGAAGTCTTGGGTAATGATTGGACTTA
TGATGAATCTTCAATCGAACAAGTTTATCCAAAATTAGAAGAAAATAATAAACCACGTGT
TGGTGATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAATATCGTTAAAAGATGTAA
AGATGATGATATGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAAATTGTAAAATCGTCTT
CCAATTTGTTGAAAAACAAAGTTCTTATTGGGTTTGGAAATTCGATGGTGGTAATTTAGT
CGTATCATTCAAATCAATTTGTAATACTAGGATAATGCAAATTTCAATTTNAAGCTCTCC
TTTAAAATTA
Length of connected seq. 1440
Full length Seq ID -
Full length Seq. -
Length of full length seq. -