VHP458 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHP458
Library	VH (Link to library)
Clone ID	VHP458 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15962-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHP4-C/VHP458Q.Seq.d/
Representative seq. ID	VHP458P (Link to Original site)
Representative DNA sequence	>VHP458 (VHP458Q) /CSM/VH/VHP4-C/VHP458Q.Seq.d/ TAATTTAGTAAAGTAATAAAATGAGTTTTATTGATCAAATCCCAAAAAGTTTTATTCCAA AGTTAGATGACTTTAGAAATAAATTAAAACCACTCGAAGGTTCAGTTGATTATTGTCCAA AGGCTTGGTTTTTAGGTCCAAAAGCAGAAAATTCTGAATTATTAATGACTCTCCTCAAAA GAGCAATTGATGCTCATCTTCAATCAAGAATCAATTTCCACAAAGAAGATGCACCAATTT TCGAAGATTCTTACAAAAAAGATCCTGTATACCTCAATGCAGCAAAAGACATGACCAAAA AAGTTGATGAAGTTTTAAATTTCTTAAAACACTCTCTTCCATATTCATCCTTTAGATATC AAGGACATATGACATCTGATGTTACTATTGCTGGTGTAATTGGTGCCACTGCTACTATTT TATACAATCCAAACAATGTAACAGTTCAAGCAAGTCCAGTAACCACATTTATTGAAATGG CAGTTAGTAATGATCTTGCCCGTATGGTTGGTTGGGAATTTCCAGAAAAAATTCCAAAGT TTAATAACAGACATGAAAAGAAACTTTTTGAAGATAAAAATATTATTCCATGCTTCCXXX XXXXXXXGCTGGTGCCAATGCAGTTGCTGCTTATTTGAGCCATTCAATTATGCGTACATC AAAAATCTGGTTATGGTATGATCTTAAAGAGATGTTTATTAAGTACAAGACTCTTCTACT TGAGATTATTATGGTTATGTGGTGATAATGATCAATTCAAAGTTGTTGGTGTACCAATTG AACCATCTAAGGAAACCCTCGATAATCTCAAATCAAGATTATACGATGCCAATGGTCAAA TGAAGAGTGTTGATACAATTTGTCAAGATCAACAACTCGTCGTTGATTTAGCTGAAGTTG GACCAGATCAAAATATCGTTTGTTTTGGTATTAATTTCAAGGATGCCAATGGTAAGTGGA ATACTGATTACAACAAATACTGTGATGTTAATAATCAAATCTATGAAAGATTTGATTATA AAAAAGAAGTTGGTATGGCTCAATTTGATTTAATTTTCTCAAATACCGCTTTCAACGATC AGTATGGTCAAGTATTCCAACAAAGTCTTGCCCAAAGATTTGGTCTCACTACCAATGTTC CAGCTTTTGGTAGTAATAAATTCCAATTACCAGTTTTAAGATCAACTGTTATGGATGTCT TTGCTAACGAAACCACTAAAGGTTCATTCTTTGATGTTACAATGCCATTGTTCAAATCAG AATGCGCTAAAATTGTTGCTGCATTTGTTAACGCTTCCAAGGCTTCAAAACCAACTCTTT AAATTTTAAATTTAATCAAAATAATAAAAAATATATTTTTATTATTCATTCATGATTTTT TT
sequence update	2002.10.25
Translated Amino Acid sequence	iSNKMSFIDQIPKSFIPKLDDFRNKLKPLEGSVDYCPKAWFLGPKAENSELLMTLLKR AIDAHLQSRINFHKEDAPIFEDSYKKDPVYLNAAKDMTKKVDEVLNFLKHSLPYSSFRYQ GHMTSDVTIAGVIGATATILYNPNNVTVQASPVTTFIEMAVSNDLARMVGWEFPEKIPKF NNRHEKKLFEDKNIIPCF--- ---AGANAVAAYLSHSIMRTSKIWLWYDLKEMFIKYKTLLLEIIMVMWsiqscwctn tignprsqikiircqwsneecynlsrsttrrfsswtrskyrlfwyfqgcqwv eylqqilcsnlkilkrswygsifnflkyrfqrsvwssiptkscpkiwshyqc ssfw*ipitsfkincygclcrnhrfilcynaivqirmrncccicrfqgfktns lnfkfnqnnkkyifiihs*ff
Translated Amino Acid sequence (All Frames)	Frame A: fskvikvlliksqkvlfqsmtleinnhskvqliivqrlgfvqkqkilnylssk eqlmlifnqesistkkmhqfskiltkkilytsmqqktpkklmkfisntlfhihpldi kdihlmllllvlvplllfytiqtmqfkqvqphllkwqlvmilpvwlvgnfqkkfqs litdmkrnflkikilfhas--- ---AGANAVAAYLSHSIMRTSKIWLWYDLKEMFIKYKTLLLEIIMVMW**siqscwctn tignprsqikiircqwsneecynlsrsttrrfsswtrskyrlfwyfqgcqwv eylqqilcsnlkilkrswygsifnflkyrfqrsvwssiptkscpkiwshyqc ssfw*ipitsfkincygclcrnhrfilcynaivqirmrncccicrfqgfktns lnfkfnqnnkkyifiihsff Frame B: nlvknefysnpkkfyskvrlkikttrrfsllskglvfrsksrkfiindspqk sncsssiknqfpqrrctnfrrflqkrscipqcskrhdqks*sfkflktlssifilis rtydicyycwcnwchcyyfiqskqcnssskssnhiyngs*scpygwlgisrknskv qtketfrkyysml--- ---lvpmqllliaiqlcvhqksgygmilkrcllstrlfylrllwlcgdndqfkvvgvpi epsketldnlksrlydangqmksvdticqdqqlvvdlaevgpdqnivcfginfkdangkw ntdynkycdvnnqiyerfdykkevgmaqfdlifsntafndqygqvfqqslaqrfglttnv pafgsnkfqlpvlrstvmdvfanettkgsffdvtmplfksecakivaafvnaskaskptl ilnlikiiknifllfihdff Frame C: iSNKMSFIDQIPKSFIPKLDDFRNKLKPLEGSVDYCPKAWFLGPKAENSELLMTLLKR AIDAHLQSRINFHKEDAPIFEDSYKKDPVYLNAAKDMTKKVDEVLNFLKHSLPYSSFRYQ GHMTSDVTIAGVIGATATILYNPNNVTVQASPVTTFIEMAVSNDLARMVGWEFPEKIPKF NNRHEKKLFEDKNIIPCF--- ---wcqcscclfepfnyayiknlvmvsrdvyvqdsstdyygyvviminskllvyql nhlrkpsiisnqdytmpmvkrvliqfvkinnsslilkldqikisfvlvlisrmpmvsg ilittntvmliiksmkdliikkklvwlnlifsqiplstismvkysnkvlpkdlvslpmf qllvvinsnyqfdqllwmslltkplkvhslmlqchcsnqnalklllhlltlprlqnqlf kfisk*kiyfyysfmif
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHP458 (VHP458Q) /CSM/VH/VHP4-C/VHP458Q.Seq.d/ 2551 0.0 VHH507 (VHH507Q) /CSM/VH/VHH5-A/VHH507Q.Seq.d/ 1407 0.0 VHQ102 (VHQ102Q) /CSM/VH/VHQ1-A/VHQ102Q.Seq.d/ 1392 0.0 VHP496 (VHP496Q) /CSM/VH/VHP4-D/VHP496Q.Seq.d/ 1392 0.0 VHL430 (VHL430Q) /CSM/VH/VHL4-B/VHL430Q.Seq.d/ 1392 0.0 VHD271 (VHD271Q) /CSM/VH/VHD2-C/VHD271Q.Seq.d/ 1392 0.0 VHM685 (VHM685Q) /CSM/VH/VHM6-D/VHM685Q.Seq.d/ 1384 0.0 VHB349 (VHB349Q) /CSM/VH/VHB3-C/VHB349Q.Seq.d/ 1384 0.0 VHO479 (VHO479Q) /CSM/VH/VHO4-D/VHO479Q.Seq.d/ 1368 0.0 VHL512 (VHL512Q) /CSM/VH/VHL5-A/VHL512Q.Seq.d/ 1364 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446065) Dictyostelium discoideum cDNA clone:ddv61d16, 3' ... 1405 0.0 1 (BJ441255) Dictyostelium discoideum cDNA clone:ddv46m01, 3' ... 1405 0.0 1 (BJ438084) Dictyostelium discoideum cDNA clone:ddv36f09, 3' ... 1352 0.0 1 (BJ446531) Dictyostelium discoideum cDNA clone:ddv63c01, 3' ... 1300 0.0 2 (BJ446197) Dictyostelium discoideum cDNA clone:ddv61p24, 3' ... 1300 0.0 2 (BJ444794) Dictyostelium discoideum cDNA clone:ddv57a13, 3' ... 1300 0.0 2 (BJ443772) Dictyostelium discoideum cDNA clone:ddv54g03, 3' ... 1300 0.0 2 (BJ443582) Dictyostelium discoideum cDNA clone:ddv53l08, 3' ... 1300 0.0 2 (BJ438356) Dictyostelium discoideum cDNA clone:ddv37m18, 3' ... 1300 0.0 2 (BJ445580) Dictyostelium discoideum cDNA clone:ddv59n20, 3' ... 1296 0.0 2
dna update	2008.12.17
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CP000113_3785(CP000113\|pid:none) Myxococcus xanthus DK 1622, com... 122 3e-26 CP001291_2208(CP001291\|pid:none) Cyanothece sp. PCC 7424, comple... 119 3e-25 CP000155_3327(CP000155\|pid:none) Hahella chejuensis KCTC 2396, c... 115 5e-24 CP000559_1042(CP000559\|pid:none) Methanocorpusculum labreanum Z,... 96 4e-18 CP000159_814(CP000159\|pid:none) Salinibacter ruber DSM 13855, co... 85 5e-15 AB086651_1(AB086651\|pid:none) Lactobacillus curvatus tdc gene fo... 84 1e-14 AB059363_2(AB059363\|pid:none) Tetragenococcus halophilus tnp, td... 82 4e-14 BX571866_283(BX571866\|pid:none) Photorhabdus luminescens subsp. ... 81 8e-14 AB086652_1(AB086652\|pid:none) Lactobacillus curvatus tdc gene fo... 78 7e-13 CP000416_2086(CP000416\|pid:none) Lactobacillus brevis ATCC 367, ... 76 3e-12
protein update	2009. 7.21
PSORT	psg: 0.73 gvh: 0.52 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 32.0 %: nuclear 16.0 %: mitochondrial 4.0 %: cytoskeletal >> prediction for VHP458 is cyt
5' end seq. ID	VHP458F
5' end seq.	>VHP458F.Seq TAATTTAGTAAAGTAATAAAATGAGTTTTATTGATCAAATCCCAAAAAGTTTTATTCCAA AGTTAGATGACTTTAGAAATAAATTAAAACCACTCGAAGGTTCAGTTGATTATTGTCCAA AGGCTTGGTTTTTAGGTCCAAAAGCAGAAAATTCTGAATTATTAATGACTCTCCTCAAAA GAGCAATTGATGCTCATCTTCAATCAAGAATCAATTTCCACAAAGAAGATGCACCAATTT TCGAAGATTCTTACAAAAAAGATCCTGTATACCTCAATGCAGCAAAAGACATGACCAAAA AAGTTGATGAAGTTTTAAATTTCTTAAAACACTCTCTTCCATATTCATCCTTTAGATATC AAGGACATATGACATCTGATGTTACTATTGCTGGTGTAATTGGTGCCACTGCTACTATTT TATACAATCCAAACAATGTAACAGTTCAAGCAAGTCCAGTAACCACATTTATTGAAATGG CAGTTAGTAATGATCTTGCCCGTATGGTTGGTTGGGAATTTCCAGAAAAAATTCCAAAGT TTAATAACAGACATGAAAAGAAACTTTTTGAAGATAAAAATATTATTCCATGCTTCCNNN NNNNNNN
Length of 5' end seq.	607
3' end seq. ID	VHP458Z
3' end seq.	>VHP458Z.Seq NNNNNNNNNNGCTGGTGCCAATGCAGTTGCTGCTTATTTGAGCCATTCAATTATGCGTAC ATCAAAAATCTGGTTATGGTATGATCTTAAAGAGATGTTTATTAAGTACAAGACTCTTCT ACTTGAGATTATTATGGTTATGTGGTGATAATGATCAATTCAAAGTTGTTGGTGTACCAA TTGAACCATCTAAGGAAACCCTCGATAATCTCAAATCAAGATTATACGATGCCAATGGTC AAATGAAGAGTGTTGATACAATTTGTCAAGATCAACAACTCGTCGTTGATTTAGCTGAAG TTGGACCAGATCAAAATATCGTTTGTTTTGGTATTAATTTCAAGGATGCCAATGGTAAGT GGAATACTGATTACAACAAATACTGTGATGTTAATAATCAAATCTATGAAAGATTTGATT ATAAAAAAGAAGTTGGTATGGCTCAATTTGATTTAATTTTCTCAAATACCGCTTTCAACG ATCAGTATGGTCAAGTATTCCAACAAAGTCTTGCCCAAAGATTTGGTCTCACTACCAATG TTCCAGCTTTTGGTAGTAATAAATTCCAATTACCAGTTTTAAGATCAACTGTTATGGATG TCTTTGCTAACGAAACCACTAAAGGTTCATTCTTTGATGTTACAATGCCATTGTTCAAAT CAGAATGCGCTAAAATTGTTGCTGCATTTGTTAACGCTTCCAAGGCTTCAAAACCAACTC TTTAAATTTTAAATTTAATCAAAATAATAAAAAATATATTTTTATTATTCATTCATGATT TTTTT
Length of 3' end seq.	785
Connected seq. ID	VHP458P
Connected seq.	>VHP458P.Seq TAATTTAGTAAAGTAATAAAATGAGTTTTATTGATCAAATCCCAAAAAGTTTTATTCCAA AGTTAGATGACTTTAGAAATAAATTAAAACCACTCGAAGGTTCAGTTGATTATTGTCCAA AGGCTTGGTTTTTAGGTCCAAAAGCAGAAAATTCTGAATTATTAATGACTCTCCTCAAAA GAGCAATTGATGCTCATCTTCAATCAAGAATCAATTTCCACAAAGAAGATGCACCAATTT TCGAAGATTCTTACAAAAAAGATCCTGTATACCTCAATGCAGCAAAAGACATGACCAAAA AAGTTGATGAAGTTTTAAATTTCTTAAAACACTCTCTTCCATATTCATCCTTTAGATATC AAGGACATATGACATCTGATGTTACTATTGCTGGTGTAATTGGTGCCACTGCTACTATTT TATACAATCCAAACAATGTAACAGTTCAAGCAAGTCCAGTAACCACATTTATTGAAATGG CAGTTAGTAATGATCTTGCCCGTATGGTTGGTTGGGAATTTCCAGAAAAAATTCCAAAGT TTAATAACAGACATGAAAAGAAACTTTTTGAAGATAAAAATATTATTCCATGCTTCC--- -------GCTGGTGCCAATGCAGTTGCTGCTTATTTGAGCCATTCAATTATGCGTACATC AAAAATCTGGTTATGGTATGATCTTAAAGAGATGTTTATTAAGTACAAGACTCTTCTACT TGAGATTATTATGGTTATGTGGTGATAATGATCAATTCAAAGTTGTTGGTGTACCAATTG AACCATCTAAGGAAACCCTCGATAATCTCAAATCAAGATTATACGATGCCAATGGTCAAA TGAAGAGTGTTGATACAATTTGTCAAGATCAACAACTCGTCGTTGATTTAGCTGAAGTTG GACCAGATCAAAATATCGTTTGTTTTGGTATTAATTTCAAGGATGCCAATGGTAAGTGGA ATACTGATTACAACAAATACTGTGATGTTAATAATCAAATCTATGAAAGATTTGATTATA AAAAAGAAGTTGGTATGGCTCAATTTGATTTAATTTTCTCAAATACCGCTTTCAACGATC AGTATGGTCAAGTATTCCAACAAAGTCTTGCCCAAAGATTTGGTCTCACTACCAATGTTC CAGCTTTTGGTAGTAATAAATTCCAATTACCAGTTTTAAGATCAACTGTTATGGATGTCT TTGCTAACGAAACCACTAAAGGTTCATTCTTTGATGTTACAATGCCATTGTTCAAATCAG AATGCGCTAAAATTGTTGCTGCATTTGTTAACGCTTCCAAGGCTTCAAAACCAACTCTTT AAATTTTAAATTTAATCAAAATAATAAAAAATATATTTTTATTATTCATTCATGATTTTT TT
Length of connected seq.	1372
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas