VHP435
Library VH
(Link to library)
Clone ID VHP435
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHP435P
(Link to Original site)
Representative DNA sequence
>VHP435 (VHP435Q) /CSM/VH/VHP4-B/VHP435Q.Seq.d/
CTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGT
GCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCAC
GGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTT
TCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATT
AAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGT
TGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGT
TCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTC
GAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAA
CCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAA
GAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTXXXXXXXXX
XTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGA
ATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTT
NTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATG
CCATCCACANAGGTGGTGGTNAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTG
AATTAACTGCCTCCCCAACTNTNTTAGAACCAATNTACTTAGTAGAAATTACTGCCCCAG
AAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTANAGGTATTGTTATTGGTG
AAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAAT
CCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTG
TCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCG
CTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCC
ACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAAANATAGTAATCAAATCT
AAAAAAAATTTTAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIV---

---PEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVXDENMRGIRFNLYDVTLH
TDAIHXGGGXIIPTARRVLYAAELTASPTXLEPXYLVEITAPENAIGGIYSVLNRRXGIV
IGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHWASIGVVNKDKKAT
EVALATRKRKGLAPEIPDLDKFHEKL*ti*val*vfkxsnqi*kkf*k


Translated Amino Acid sequence (All Frames)
Frame A:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIV---

---srr*rcqsprqchqrcsife*n*rffrwcfpmghqrrccx**kherypfqsl*chpp
h*chpxrwwxnhpncssctlcc*inclpnxxrtnxlsrnycprkrywwyllctqssxryc
yw*rtsyrfpiilcqssftsirilrfhr*ftfphcrssfptmclrslgfnwccqqr*esh
*srfshqkekrfsprnprs*qiprktlnnlsrtlsfqx**snlkkilkk

Frame B:
srvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpikf
lvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlisv
qk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tlk
klislsvellnpsmsl---

---PEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVXDENMRGIRFNLYDVTLH
TDAIHXGGGXIIPTARRVLYAAELTASPTXLEPXYLVEITAPENAIGGIYSVLNRRXGIV
IGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHWASIGVVNKDKKAT
EVALATRKRKGLAPEIPDLDKFHEKL*ti*val*vfkxsnqi*kkf*k

Frame C:
leckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*sf
w*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fqf
rsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*r
slslfp*sy*irqchc---

---qkvtvpisssmspkvfni*mklkilslvlsngppkkvlfxmkt*evsvsifmmspst
lmpstxvvvkssqllvvysmlln*lppqlx*nqxt**kllpqktllvvftlysivvxvll
lvknvvsvphyslskliyqy*npsvspliyvptlpvklshnvssiiglqlvlstkirkpl
ksl*pperekv*pqksqiltnstknskqfkshfefsxivikskknfkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP435 (VHP435Q) /CSM/VH/VHP4-B/VHP435Q.Seq.d/ 2355 0.0
VHH874 (VHH874Q) /CSM/VH/VHH8-D/VHH874Q.Seq.d/ 1259 0.0
VHP832 (VHP832Q) /CSM/VH/VHP8-B/VHP832Q.Seq.d/ 1259 0.0
VHP749 (VHP749Q) /CSM/VH/VHP7-C/VHP749Q.Seq.d/ 1259 0.0
VHP213 (VHP213Q) /CSM/VH/VHP2-A/VHP213Q.Seq.d/ 1259 0.0
VHO803 (VHO803Q) /CSM/VH/VHO8-A/VHO803Q.Seq.d/ 1259 0.0
VHO687 (VHO687Q) /CSM/VH/VHO6-D/VHO687Q.Seq.d/ 1259 0.0
VHO104 (VHO104Q) /CSM/VH/VHO1-A/VHO104Q.Seq.d/ 1259 0.0
VHN508 (VHN508Q) /CSM/VH/VHN5-A/VHN508Q.Seq.d/ 1259 0.0
VHK684 (VHK684Q) /CSM/VH/VHK6-D/VHK684Q.Seq.d/ 1259 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU039543) Dictyostelium discoideum slug cDNA, clone SLE722. 1259 0.0 1
(AU039435) Dictyostelium discoideum slug cDNA, clone SLH782. 1259 0.0 1
(AU033620) Dictyostelium discoideum slug cDNA, clone SLB237. 1259 0.0 1
(BJ446365) Dictyostelium discoideum cDNA clone:ddv62b13, 3' ... 1259 0.0 1
(BJ446358) Dictyostelium discoideum cDNA clone:ddv62p08, 3' ... 1259 0.0 1
(BJ445994) Dictyostelium discoideum cDNA clone:ddv61f10, 3' ... 1259 0.0 1
(BJ445933) Dictyostelium discoideum cDNA clone:ddv61i04, 3' ... 1259 0.0 1
(BJ445876) Dictyostelium discoideum cDNA clone:ddv60m22, 3' ... 1259 0.0 1
(BJ445613) Dictyostelium discoideum cDNA clone:ddv60f02, 3' ... 1259 0.0 1
(BJ445302) Dictyostelium discoideum cDNA clone:ddv59g01, 3' ... 1259 0.0 1
dna update 2008.12.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016... 264 6e-69
AF248644_1(AF248644|pid:none) Filobasidiella neoformans var. neo... 258 2e-67
AF083031_87(AF083031|pid:none) Guillardia theta nucleomorph chro... 258 3e-67
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 257 6e-67
(Q6FYA7) RecName: Full=Elongation factor 2; Short=EF-2;... 257 7e-67
AY026074_1(AY026074|pid:none) Monosiga brevicollis elongation fa... 256 1e-66
(Q874B9) RecName: Full=Elongation factor 2; Short=EF-2;... 256 1e-66
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 255 3e-66
A40411(A40411) translation elongation factor eEF-2 - Caenorhabdi... 255 3e-66
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w... 254 4e-66
protein update 2009. 7.21
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHP435 is cyt

5' end seq. ID VHP435F
5' end seq.
>VHP435F.Seq
CTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGT
GCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCAC
GGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTT
TCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATT
AAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGT
TGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGT
TCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTC
GAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAA
CCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAA
GAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTNNNNNNNNN
N
Length of 5' end seq. 601
3' end seq. ID VHP435Z
3' end seq.
>VHP435Z.Seq
NNNNNNNNNNTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTC
AATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAG
GTGTTGTTTNTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCC
ACACTGATGCCATCCACANAGGTGGTGGTNAAATCATCCCAACTGCTCGTCGTGTACTCT
ATGCTGCTGAATTAACTGCCTCCCCAACTNTNTTAGAACCAATNTACTTAGTAGAAATTA
CTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTANAGGTATTG
TTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAG
TATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCC
CACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCA
CTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTG
ACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAAANATAGTA
ATCAAATCTAAAAAAAATTTTAAAAAAA
Length of 3' end seq. 688
Connected seq. ID VHP435P
Connected seq.
>VHP435P.Seq
CTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGT
GCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCAC
GGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTT
TCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATT
AAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGT
TGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGT
TCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTC
GAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAA
CCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAA
GAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTT---------
-TCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGA
ATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTT
NTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATG
CCATCCACANAGGTGGTGGTNAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTG
AATTAACTGCCTCCCCAACTNTNTTAGAACCAATNTACTTAGTAGAAATTACTGCCCCAG
AAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTANAGGTATTGTTATTGGTG
AAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAAT
CCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTG
TCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCG
CTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCC
ACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAAANATAGTAATCAAATCT
AAAAAAAATTTTAAAAAAA
Length of connected seq. 1269
Full length Seq ID -
Full length Seq. -
Length of full length seq. -