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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP429
Library VH
(Link to library)
Clone ID VHP429
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13887-1
Original site URL
Representative seq. ID VHP429P
(Link to Original site)
Representative DNA sequence 
>VHP429 (VHP429Q) /CSM/VH/VHP4-B/VHP429Q.Seq.d/
AGTTCCTTGCTAGATAAATAAACAAAAAATGTCATTTGTAGTAGGTTTTGATTTCGGAAC
AAAGAATTGCACTATTGCAGTTGCCCAAAAGGGTGGTGTAGATGTTATTGCCAACGAAGT
TTCAAATCGTTTAACTCCATCAATGGTTTCATTTGGTGAAAAAGAGAGATACTTAGGTGA
ATCTGCTTTAACTAATCAATTAAGAAATATTAGAAATACAATTACAAATATTAAAAGATT
TATTGGACAAGAATTTAAAACAGATACAGTTCAAGAAGAATTAAAACATGAAATGTTTCA
ATCATACGAAATGGATAATGGATTTGTTGGATATAATGTAACATATGCAGGTGAACAATG
TTCATTCTCAAGTGAAGCAATTTTGGGTATGTTATTTGGTAAATTAAAAAAGACCACAGA
AGCATTTGTAAACAATCCAGTTCGTGATGTGGTAATCTCAGTACCAGTATTTTGGAATGA
TTATCAACGTCGTGCCATTTTAAATGCAGGTTCCATCGCAGGTTTAAATATCATTCGTTT
AATCAATGAAACCACAGCAACAGCACTTTCATATGGTATCTACAAAGXXXXXXXXXXGGT
CGTATGCAAGCTTCCGATCTTTTAGCCATTGAAACCGCCGAAAAGAAGAACGCCCTCGAA
AGTTACATCTATGATATGCGTTCAAAATTACAATCATCCCTCAAAGAATACGTCACCCCA
GCCGATGCTGAAACCTTTATGACTCAATTAAACAAACAAATGGATTGGTTAGAAAGTGAA
GAAGGTGAAGATCAAACTAAATCTGTTTACGCTGGTAAACTCGAAGAACTCCGTCGTCTT
GGTAATCCAATTCAAAAACGTAAACAAGACTTGGAAGATTATCCAGATGCTGTCCAAACC
CTTAAAAACATTGCTTCATACGTTAAAAACGAAGCTATGATTCCAGGTGAAAGATATGAC
CACATTGAAAAGGAAGAAAAAGAAAAACTTTGCAAAGATTGTGATGATGCCGTCGAATGG
ATTGATGCTTTAGTTGCCAAACAACAAGCAACTCCAAAGACTCAACCATGTATTATCAAT
ACCACTGAAGTACTCGCCAAAAAGACTCAATTAGAAGTTACCGCTAAAATGATCCTTGGT
AAACCAAAACCAAAGCCAGTTGAAGTACCAAAGGAAGAACCAAAAGATACTCCAAGGAAT
CAAAAGACGCACCAGCTGAAGAACCAGTTGCAACTAAAGNATCAAAAGNAGGNANNATTT
TTAGA
sequence update 2002.10.25
Translated Amino Acid sequence 
vpc*INKQKMSFVVGFDFGTKNCTIAVAQKGGVDVIANEVSNRLTPSMVSFGEKERYLGE
SALTNQLRNIRNTITNIKRFIGQEFKTDTVQEELKHEMFQSYEMDNGFVGYNVTYAGEQC
SFSSEAILGMLFGKLKKTTEAFVNNPVRDVVISVPVFWNDYQRRAILNAGSIAGLNIIRL
INETTATALSYGIYK---

---GRMQASDLLAIETAEKKNALESYIYDMRSKLQSSLKEYVTPADAETFMTQLNKQMDW
LESEEGEDQTKSVYAGKLEELRRLGNPIQKRKQDLEDYPDAVQTLKNIASYVKNEAMIPG
ERYDHIEKEEKEKLCKDCDDAVEWIDALVAKQQATPKTQPCIINTTEVLAKKTQLEVTAK
MILGKPKPKPVEVPKEEPKDTPRNQKTHQLKNQLQLKXQKXXXFL
Translated Amino Acid sequence (All Frames) 
Frame A:
sslldk*tknvicsrf*frnkelhycscpkgwcrcycqrsfksfnsingfiw*kreilr*
icfn*sikky*kynyky*kiywtri*nryssrrikt*nvsiirng*wicwi*cnicr*tm
filk*snfgyviw*ikkdhrsickqsss*cgnlstsile*lstschfkcrfhrrfkyhsf
nq*nhsnstfiwylq---

---GRMQASDLLAIETAEKKNALESYIYDMRSKLQSSLKEYVTPADAETFMTQLNKQMDW
LESEEGEDQTKSVYAGKLEELRRLGNPIQKRKQDLEDYPDAVQTLKNIASYVKNEAMIPG
ERYDHIEKEEKEKLCKDCDDAVEWIDALVAKQQATPKTQPCIINTTEVLAKKTQLEVTAK
MILGKPKPKPVEVPKEEPKDTPRNQKTHQLKNQLQLKXQKXXXFL

Frame B:
vpc*INKQKMSFVVGFDFGTKNCTIAVAQKGGVDVIANEVSNRLTPSMVSFGEKERYLGE
SALTNQLRNIRNTITNIKRFIGQEFKTDTVQEELKHEMFQSYEMDNGFVGYNVTYAGEQC
SFSSEAILGMLFGKLKKTTEAFVNNPVRDVVISVPVFWNDYQRRAILNAGSIAGLNIIRL
INETTATALSYGIYK---

---vvcklpif*plkppkrrtpskvtsmicvqnynhpskntspqpmlkpl*ln*tnkwig
*kvkkvkiklnlftlvnsknsvvlviqfknvnktwkiiqmlskplktllhtlktkl*fqv
kdmttlkrkkkknfakivmmpsnglml*lpnnkqlqrlnhvlsiplkyspkrln*klplk
*slvnqnqsqlkyqrknqkilqgikrrts*rtscn*xikxrxxf*

Frame C:
flar*inkkchl**vliseqriallqlpkrvv*mllptkfqiv*lhqwfhlvkkrdt*vn
ll*lin*eileiqlqilkdlldknlkqiqfkkn*nmkcfnhtkwimdlldim*hmqvnnv
hsqvkqfwvcylvn*krpqkhl*tiqfvmw*sqyqyfgmiinvvpf*mqvpsqv*isfv*
smkpqqqhfhmvstk---

---syasfrsfsh*nrrkeerprklhl*yafkitiipqrirhpsrc*nlydsikqtnglv
rk*rr*rsn*iclrw*trrtpssw*snskt*trlgrlsrccpnp*khcfir*krsydsr*
ki*ph*kgrkrktlqrl**crrmd*cfscqttsnskdstmyyqyh*strqkdsirsyr*n
dpw*tktkas*stkgrtkryskeskdapaeepvatkxskxgxifr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP429 (VHP429Q) /CSM/VH/VHP4-B/VHP429Q.Seq.d/                       1855   0.0
VHE112 (VHE112Q) /CSM/VH/VHE1-A/VHE112Q.Seq.d/                       1164   0.0
AHQ273 (AHQ273Q) /CSM/AH/AHQ2-D/AHQ273Q.Seq.d/                       1164   0.0
VHI779 (VHI779Q) /CSM/VH/VHI7-D/VHI779Q.Seq.d/                       1158   0.0
VHG630 (VHG630Q) /CSM/VH/VHG6-B/VHG630Q.Seq.d/                       1154   0.0
VHG245 (VHG245Q) /CSM/VH/VHG2-B/VHG245Q.Seq.d/                       1154   0.0
SHL223 (SHL223Q) /CSM/SH/SHL2-A/SHL223Q.Seq.d/                       1154   0.0
SHD877 (SHD877Q) /CSM/SH/SHD8-D/SHD877Q.Seq.d/                       1154   0.0
CHI895 (CHI895Q) /CSM/CH/CHI8-D/CHI895Q.Seq.d/                       1154   0.0
AHL809 (AHL809Q) /CSM/AH/AHL8-A/AHL809Q.Seq.d/                       1154   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ427125) Dictyostelium discoideum cDNA clone:ddv61j08, 5' ...  1162   0.0    1
(BJ420370) Dictyostelium discoideum cDNA clone:ddv39g03, 5' ...  1162   0.0    1
(BJ338987) Dictyostelium discoideum cDNA clone:dda63a20, 5' ...  1162   0.0    1
(BJ423359) Dictyostelium discoideum cDNA clone:ddv48n19, 5' ...  1156   0.0    1
(BJ421959) Dictyostelium discoideum cDNA clone:ddv44k08, 5' ...  1152   0.0    1
(BJ421643) Dictyostelium discoideum cDNA clone:ddv43i12, 5' ...  1152   0.0    1
(BJ397405) Dictyostelium discoideum cDNA clone:dds46m06, 5' ...  1152   0.0    1
(BJ393588) Dictyostelium discoideum cDNA clone:dds31j20, 5' ...  1152   0.0    1
(BJ369443) Dictyostelium discoideum cDNA clone:ddc50h16, 5' ...  1152   0.0    1
(BJ369006) Dictyostelium discoideum cDNA clone:ddc48n20, 5' ...  1152   0.0    1
dna update 2008.12.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q5R606) RecName: Full=Heat shock protein 105 kDa; AltName: Full...   174   5e-42
D86956_1(D86956|pid:none) Homo sapiens mRNA for KIAA0201 gene, p...   174   5e-42
CU638743_280(CU638743|pid:none) Podospora anserina genomic DNA c...   174   5e-42
AF039695_1(AF039695|pid:none) Homo sapiens antigen NY-CO-25 (NY-...   174   5e-42
(Q0IIM3) RecName: Full=Heat shock protein 105 kDa; AltName: Full...   173   1e-41
AC009322_1(AC009322|pid:none) Arabidopsis thaliana chromosome I ...   171   5e-41
AB023420_1(AB023420|pid:none) Homo sapiens mRNA for heat shock p...   171   7e-41
AK165046_1(AK165046|pid:none) Mus musculus 0 day neonate eyeball...   171   7e-41
X67643_1(X67643|pid:none) H.sapiens HS24/p52 mRNA.                    171   7e-41
AK146697_1(AK146697|pid:none) Mus musculus 13 days embryo liver ...   171   7e-41
protein update 2009. 7.21
PSORT 

 psg: 0.84  gvh: 0.36  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for VHP429 is cyt
5' end seq. ID VHP429F
5' end seq. 
>VHP429F.Seq
AGTTCCTTGCTAGATAAATAAACAAAAAATGTCATTTGTAGTAGGTTTTGATTTCGGAAC
AAAGAATTGCACTATTGCAGTTGCCCAAAAGGGTGGTGTAGATGTTATTGCCAACGAAGT
TTCAAATCGTTTAACTCCATCAATGGTTTCATTTGGTGAAAAAGAGAGATACTTAGGTGA
ATCTGCTTTAACTAATCAATTAAGAAATATTAGAAATACAATTACAAATATTAAAAGATT
TATTGGACAAGAATTTAAAACAGATACAGTTCAAGAAGAATTAAAACATGAAATGTTTCA
ATCATACGAAATGGATAATGGATTTGTTGGATATAATGTAACATATGCAGGTGAACAATG
TTCATTCTCAAGTGAAGCAATTTTGGGTATGTTATTTGGTAAATTAAAAAAGACCACAGA
AGCATTTGTAAACAATCCAGTTCGTGATGTGGTAATCTCAGTACCAGTATTTTGGAATGA
TTATCAACGTCGTGCCATTTTAAATGCAGGTTCCATCGCAGGTTTAAATATCATTCGTTT
AATCAATGAAACCACAGCAACAGCACTTTCATATGGTATCTACAAAGNNNNNNNNNN
Length of 5' end seq. 597
3' end seq. ID VHP429Z
3' end seq. 
>VHP429Z.Seq
NNNNNNNNNNGGTCGTATGCAAGCTTCCGATCTTTTAGCCATTGAAACCGCCGAAAAGAA
GAACGCCCTCGAAAGTTACATCTATGATATGCGTTCAAAATTACAATCATCCCTCAAAGA
ATACGTCACCCCAGCCGATGCTGAAACCTTTATGACTCAATTAAACAAACAAATGGATTG
GTTAGAAAGTGAAGAAGGTGAAGATCAAACTAAATCTGTTTACGCTGGTAAACTCGAAGA
ACTCCGTCGTCTTGGTAATCCAATTCAAAAACGTAAACAAGACTTGGAAGATTATCCAGA
TGCTGTCCAAACCCTTAAAAACATTGCTTCATACGTTAAAAACGAAGCTATGATTCCAGG
TGAAAGATATGACCACATTGAAAAGGAAGAAAAAGAAAAACTTTGCAAAGATTGTGATGA
TGCCGTCGAATGGATTGATGCTTTAGTTGCCAAACAACAAGCAACTCCAAAGACTCAACC
ATGTATTATCAATACCACTGAAGTACTCGCCAAAAAGACTCAATTAGAAGTTACCGCTAA
AATGATCCTTGGTAAACCAAAACCAAAGCCAGTTGAAGTACCAAAGGAAGAACCAAAAGA
TACTCCAAGGAATCAAAAGACGCACCAGCTGAAGAACCAGTTGCAACTAAAGNATCAAAA
GNAGGNANNATTTTTAGA
Length of 3' end seq. 678
Connected seq. ID VHP429P
Connected seq. 
>VHP429P.Seq
AGTTCCTTGCTAGATAAATAAACAAAAAATGTCATTTGTAGTAGGTTTTGATTTCGGAAC
AAAGAATTGCACTATTGCAGTTGCCCAAAAGGGTGGTGTAGATGTTATTGCCAACGAAGT
TTCAAATCGTTTAACTCCATCAATGGTTTCATTTGGTGAAAAAGAGAGATACTTAGGTGA
ATCTGCTTTAACTAATCAATTAAGAAATATTAGAAATACAATTACAAATATTAAAAGATT
TATTGGACAAGAATTTAAAACAGATACAGTTCAAGAAGAATTAAAACATGAAATGTTTCA
ATCATACGAAATGGATAATGGATTTGTTGGATATAATGTAACATATGCAGGTGAACAATG
TTCATTCTCAAGTGAAGCAATTTTGGGTATGTTATTTGGTAAATTAAAAAAGACCACAGA
AGCATTTGTAAACAATCCAGTTCGTGATGTGGTAATCTCAGTACCAGTATTTTGGAATGA
TTATCAACGTCGTGCCATTTTAAATGCAGGTTCCATCGCAGGTTTAAATATCATTCGTTT
AATCAATGAAACCACAGCAACAGCACTTTCATATGGTATCTACAAAG----------GGT
CGTATGCAAGCTTCCGATCTTTTAGCCATTGAAACCGCCGAAAAGAAGAACGCCCTCGAA
AGTTACATCTATGATATGCGTTCAAAATTACAATCATCCCTCAAAGAATACGTCACCCCA
GCCGATGCTGAAACCTTTATGACTCAATTAAACAAACAAATGGATTGGTTAGAAAGTGAA
GAAGGTGAAGATCAAACTAAATCTGTTTACGCTGGTAAACTCGAAGAACTCCGTCGTCTT
GGTAATCCAATTCAAAAACGTAAACAAGACTTGGAAGATTATCCAGATGCTGTCCAAACC
CTTAAAAACATTGCTTCATACGTTAAAAACGAAGCTATGATTCCAGGTGAAAGATATGAC
CACATTGAAAAGGAAGAAAAAGAAAAACTTTGCAAAGATTGTGATGATGCCGTCGAATGG
ATTGATGCTTTAGTTGCCAAACAACAAGCAACTCCAAAGACTCAACCATGTATTATCAAT
ACCACTGAAGTACTCGCCAAAAAGACTCAATTAGAAGTTACCGCTAAAATGATCCTTGGT
AAACCAAAACCAAAGCCAGTTGAAGTACCAAAGGAAGAACCAAAAGATACTCCAAGGAAT
CAAAAGACGCACCAGCTGAAGAACCAGTTGCAACTAAAGNATCAAAAGNAGGNANNATTT
TTAGA
Length of connected seq. 1255
Full length Seq ID -
Full length Seq. -
Length of full length seq. -