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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP417
Library VH
(Link to library)
Clone ID VHP417
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16336-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHP417 (VHP417Q) /CSM/VH/VHP4-A/VHP417Q.Seq.d/
CTGTTGGCCTACTGGTTTATTTTTATATTTTCATTCACCAAAAACTATTGAAAATGTTTG
AAAGAACATTGGTTGACCTCATCAGAGGTATTAGAAACCATAAAAAGAATGAAACTAAAT
TTATAAATCAATGTATAAATGAAATTAAAGAAGAATTAAAAGGTGATATGCAAAAAAAGA
CAGTTGCCGTCCAAAAATTAACATATATTCAAATGTTAGGATTTGATATTAGTTGGGCAT
CATTTAAAATTGTTGAAGTTATGAGTTGTAATAAATTTTCATCAAAAAGAATTGGATATT
TAGCAGCATCACAAAGTTTTAATGAAGGAACAGATGTTATTGTATTGGCAACTCATCAAA
TTAGAAAGGATTTCTTATCATCGAATCAAAGTGAAGCCTATTTAGCATTGAATTGTCTTT
CAAATATTTGTACAACCGATTTAGCAAGAGAGTTGGCAAATGATATCCTAACATTATTGA
GTACACAAAAAACACATATTTTAAAGAGAGCCATCACGGTGTTATATAAGATATTCTTGA
GATXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
VGLLVYFYIFIHQKLLKMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKT
VAVQKLTYIQMLGFDISWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQI
RKDFLSSNQSEAYLALNCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLR
---
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywfififsftkny*kclkehwltssevletikrmklnl*inv*mklkkn*kvickkr
qlpskn*hifkc*dlilvghhlkllkl*vvinfhqkeldi*qhhkvlmkeqmllywqlik
lerisyhrikvkpi*h*ivfqifvqpi*qeswqmis*hy*vhkkhif*repsrcyirys*
---


Frame B:
cwptglflyfhspktienv*knig*phqry*kp*ke*n*iyksmyk*n*rrikr*yakkd
scrpkiniysnvri*y*lgii*nc*syel**ifikknwifssitkf**rnrcycignssn
*kgfliiesk*slfsielsfkylynrfskrvgk*ypniieytkntyfkeshhgvi*dile
---


Frame C:
VGLLVYFYIFIHQKLLKMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKT
VAVQKLTYIQMLGFDISWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQI
RKDFLSSNQSEAYLALNCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLR
---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP417 (VHP417Q) /CSM/VH/VHP4-A/VHP417Q.Seq.d/                       1035   0.0
SHB371 (SHB371Q) /CSM/SH/SHB3-C/SHB371Q.Seq.d/                       1007   0.0
SHL605 (SHL605Q) /CSM/SH/SHL6-A/SHL605Q.Seq.d/                       1003   0.0
VHL434 (VHL434Q) /CSM/VH/VHL4-B/VHL434Q.Seq.d/                        999   0.0
VHJ112 (VHJ112Q) /CSM/VH/VHJ1-A/VHJ112Q.Seq.d/                        999   0.0
SHI615 (SHI615Q) /CSM/SH/SHI6-A/SHI615Q.Seq.d/                        999   0.0
CHR478 (CHR478Q) /CSM/CH/CHR4-D/CHR478Q.Seq.d/                        999   0.0
AHI847 (AHI847Q) /CSM/AH/AHI8-B/AHI847Q.Seq.d/                        999   0.0
AHI342 (AHI342Q) /CSM/AH/AHI3-B/AHI342Q.Seq.d/                        999   0.0
SHF187 (SHF187Q) /CSM/SH/SHF1-D/SHF187Q.Seq.d/                        997   0.0
own update 2003. 1. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ427017) Dictyostelium discoideum cDNA clone:ddv61b06, 5' ...   724   0.0    2
(BJ392180) Dictyostelium discoideum cDNA clone:dds26n17, 5' ...   724   0.0    3
(BJ397657) Dictyostelium discoideum cDNA clone:dds47i02, 5' ...   724   0.0    2
(BJ424700) Dictyostelium discoideum cDNA clone:ddv53d10, 5' ...   724   0.0    2
(BJ423398) Dictyostelium discoideum cDNA clone:ddv49g03, 5' ...   724   0.0    2
(BJ334968) Dictyostelium discoideum cDNA clone:dda48n12, 5' ...   724   0.0    2
(BJ371162) Dictyostelium discoideum cDNA clone:ddc56l20, 5' ...   724   0.0    2
(BJ396044) Dictyostelium discoideum cDNA clone:dds41m04, 5' ...   724   0.0    2
(BJ396386) Dictyostelium discoideum cDNA clone:dds42b22, 5' ...   724   0.0    2
(BJ334646) Dictyostelium discoideum cDNA clone:dda47d11, 5' ...   724   0.0    2
dna update 2008.12.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005142_1(BC005142|pid:none) Homo sapiens adaptor-related prote...   201   1e-50
BC010065_1(BC010065|pid:none) Homo sapiens adaptor-related prote...   201   1e-50
AB384738_1(AB384738|pid:none) Synthetic construct DNA, clone: pF...   201   1e-50
(O14617) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   201   1e-50
AB015979_1(AB015979|pid:none) Bos taurus mRNA for adaptor relate...   199   5e-50
AK141789_1(AK141789|pid:none) Mus musculus 9 days embryo whole b...   198   7e-50
AK155518_1(AK155518|pid:none) Mus musculus NOD-derived CD11c +ve...   198   7e-50
(O54774) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   198   7e-50
BC037477_1(BC037477|pid:none) Mus musculus adaptor-related prote...   198   7e-50
BC154680_1(BC154680|pid:none) Xenopus tropicalis adaptor-related...   196   3e-49
protein update 2009. 7.21
PSORT 

 psg: 0.94  gvh: 0.43  alm: 0.40  top: 0.57  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: cytoskeletal
	  8.0 %: peroxisomal
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for VHP417 is cyt
5' end seq. ID VHP417F
5' end seq. 
>VHP417F.Seq
CTGTTGGCCTACTGGTTTATTTTTATATTTTCATTCACCAAAAACTATTGAAAATGTTTG
AAAGAACATTGGTTGACCTCATCAGAGGTATTAGAAACCATAAAAAGAATGAAACTAAAT
TTATAAATCAATGTATAAATGAAATTAAAGAAGAATTAAAAGGTGATATGCAAAAAAAGA
CAGTTGCCGTCCAAAAATTAACATATATTCAAATGTTAGGATTTGATATTAGTTGGGCAT
CATTTAAAATTGTTGAAGTTATGAGTTGTAATAAATTTTCATCAAAAAGAATTGGATATT
TAGCAGCATCACAAAGTTTTAATGAAGGAACAGATGTTATTGTATTGGCAACTCATCAAA
TTAGAAAGGATTTCTTATCATCGAATCAAAGTGAAGCCTATTTAGCATTGAATTGTCTTT
CAAATATTTGTACAACCGATTTAGCAAGAGAGTTGGCAAATGATATCCTAACATTATTGA
GTACACAAAAAACACATATTTTAAAGAGAGCCATCACGGTGTTATATAAGATATTCTTGA
GATNNNNNNNNNN
Length of 5' end seq. 553
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -