VHP414 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHP414
Library	VH (Link to library)
Clone ID	VHP414 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U13591-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHP4-A/VHP414Q.Seq.d/
Representative seq. ID	VHP414P (Link to Original site)
Representative DNA sequence	>VHP414 (VHP414Q) /CSM/VH/VHP4-A/VHP414Q.Seq.d/ ATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAATTC ACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACATGATGACATCGGTCC TTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCATAAACCATTGTGATATTACAAAC ATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAGAAAATCATTAAGAGATAATGAA GAACACTTAAATAAAGCACATGAAGAAATCAAAAATGCTTTAAATGGTGAAGAATGGATT ATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGATGAACATGTTAAAAAACAATTA GGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAGTAAATGTATTGTAAATGCATCA AAAGATGAATTAACTAAAGAATCAATCATTAATGCAAATACTGCTAAAAAGATTGTATTA ATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAAGTATGCATTTAATGGTGGTCAA TTAAATCTTTTATTCAAXXXXXXXXXXGGTGGTAATTTAATCATCNCCTTTAAATCAATT TGTAATATCTCTGATAATGCCAATTTCGATTTCATAAAGTCCTTCCAGTACCAGGTGTTT TCTCATTAGCTGCTAAAATCAATTTGAAAGAGANCCAAGAGAAATTCGATACCGCTTTTG AAAGAATTAAAGAGGTCACTAAAGTAGATTGGTCCTATGATGAGCAATCATTGGAAACTG TTTATCCAGCACTTGAAGAAAGAAATAAAGAAAGAATTGGTGACTTATTCCAAGAGATTA TTAAATATGTCGCTGATAATATCGTTAAACGTTGTAAAGAGGATATGGTTTTAGAAAGTT TCCTCGAAGCAACTTCAAATGCAAAGATTGTTTTCCGTCACAATGCCAAAGCAAACGGTT ATTGGAATTGGAGTTTTGAAAACAATGATTTAGTAATCACCTTCAAATCAATTTGCAATG TTAGTGATAATGCAAACTTTGATTTCATTAAAATTTTACCATCACCAGGTGTACTCACTT TAGCCTCTAGAATCAATTTGAGAGAGAATCAAGAGAAAATCAATGAATCTTTCGAAAAGA TTAAAGAAGTCTTGGGTAATGATTGGACTTATGATGAATCTTCAATCGAACAAGTTTATC CAAAATTAGAAGAAAATAATAAACCACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTT ACATCAGTCAAAATATCGTTAAAAGATGTAAAGATGATGATATGGTCAAAGAAGGTTTCG TTGAAGCAACTCAAAATTGTAAAATCGTCTTCCAATTTGTTGAAAAACAAAGTTCTTATT GGGTTTGGAAATTCGATGGTGGTAATTTAGTCGTATCATTCAAATCAATTTGTAATACTA GNATAATGCAAATTTCAATTTNAAGCTCTCCTTTAAAATTA
sequence update	2002.10.25
Translated Amino Acid sequence	ingeyldsidedrsklrftiaaywdsnvert*hrsfrircytwvrvvinhcditn iFFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKVDEHVKKQL GEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYWKYAFNGGQ LNLLF--- ---GGNLIIXFKSICNISDNANFDFIKSFQYQVFSHllksikrxkrnsipllkelkrs lkigpmmsnhwklfiqhlkkeikkelvtyskrllnmsliislnvvkriwfkvsskqlq mqrlfsvtmpkqtvigigvlktmi*spsnqfamlvimqtlislkfyhhqvyslplesi erikrksmnlskrlkkswvmiglmmnlqsnkfiqnkkiinhvlvmsllksfvtsvkis lkdvkmmiwskkvslkqlkivksssnllknkvligfgnsmvvisyhsnqfvilxckfq fxall*n
Translated Amino Acid sequence (All Frames)	Frame A: ingeyldsidedrsklrftiaaywdsnvert*hrsfrircytwvrvvinhcditn iFFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKVDEHVKKQL GEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYWKYAFNGGQ LNLLF--- ---GGNLIIXFKSICNISDNANFDFIKSFQYQVFSHllksikrxkrnsipllkelkrs lkigpmmsnhwklfiqhlkkeikkelvtyskrllnmsliislnvvkriwfkvsskqlq mqrlfsvtmpkqtvigigvlktmi*spsnqfamlvimqtlislkfyhhqvyslplesi erikrksmnlskrlkkswvmiglmmnlqsnkfiqnkkiinhvlvmsllksfvtsvkis lkdvkmmiwskkvslkqlkivksssnllknkvligfgnsmvvisyhsnqfvilxckfq fxalln Frame B: tvntstpksmktvancdnslelqptgivemlnahddigpfglgvilgewstivilqt ynflkcltlllenheimkntikhmkkskmlmvkngllnligmpfsiklmnmlknn* vkyfikiyvqilvnvlmhqkmnlknqslmqillkrlyllmkmprihpigsmhlmvvn ifys--- ---vvissplnqfvislimpisisspsstrcfliscnqferxpreiryrfknrgh srlvl*aiignclsstrkkrknwliprdyicryrtlrgygfrkfprsnfk ckdcfpsqcqskrllelefkqfsnhlqinlqc*cklfhnftitrcthfslnqf eresrenqifrkdrslgldlifnrtslskirrk*ttcwclcnhslhqskyr kmrygqrrfrsnsklnrlpicktkfllgleirwwfsriiqinlyxnanfn xklsfki Frame C: kriprllnrrpqtaiihlncsllglkcthmmtsvlsdvlylgesghkplyykh iifnafkpcckiikr*rtlkstrnqkcfkwrmdyilgchfrstcktir silkfmsky*myckcikrinrinhckyckdcincrcqefillevciwwsi ksfiq--- ---wfnhxlinlyl*cqfrfhkvlpvpgvfslaakinlkexqekfdtaferikevt kvdwsydeqsletvypaleernkerigdlfqeiikyvadnivkrckedmvlesfleatsn akivfrhnakangywnwsfenndlvitfksicnvsdnanfdfikilpspgvltlasrinl renqekinesfekikevlgndwtydessieqvypkleennkprvgdvfaeiiryisqniv krckdddmvkegfveatqnckivfqfvekqssywvwkfdggnlvvsfksicntximqisi xssplkl
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHP414 (VHP414Q) /CSM/VH/VHP4-A/VHP414Q.Seq.d/ 2853 0.0 VHC489 (VHC489Q) /CSM/VH/VHC4-D/VHC489Q.Seq.d/ 1735 0.0 VFE124 (VFE124Q) /CSM/VF/VFE1-A/VFE124Q.Seq.d/ 1713 0.0 VHJ523 (VHJ523Q) /CSM/VH/VHJ5-A/VHJ523Q.Seq.d/ 1703 0.0 VHA662 (VHA662Q) /CSM/VH/VHA6-C/VHA662Q.Seq.d/ 1703 0.0 VHC827 (VHC827Q) /CSM/VH/VHC8-B/VHC827Q.Seq.d/ 1699 0.0 VHP470 (VHP470Q) /CSM/VH/VHP4-C/VHP470Q.Seq.d/ 1697 0.0 VHP452 (VHP452Q) /CSM/VH/VHP4-C/VHP452Q.Seq.d/ 1693 0.0 VHJ560 (VHJ560Q) /CSM/VH/VHJ5-C/VHJ560Q.Seq.d/ 1677 0.0 VFH860 (VFH860Q) /CSM/VF/VFH8-C/VFH860Q.Seq.d/ 1673 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ445947) Dictyostelium discoideum cDNA clone:ddv61l04, 3' ... 1784 0.0 1 (BJ436922) Dictyostelium discoideum cDNA clone:ddv32k16, 3' ... 1641 0.0 2 (BJ442656) Dictyostelium discoideum cDNA clone:ddv50g15, 3' ... 1635 0.0 3 (BJ437910) Dictyostelium discoideum cDNA clone:ddv35b24, 3' ... 1628 0.0 2 (BJ446102) Dictyostelium discoideum cDNA clone:ddv61l18, 3' ... 1614 0.0 4 (BJ442583) Dictyostelium discoideum cDNA clone:ddv50g12, 3' ... 1614 0.0 2 (BJ430898) Dictyostelium discoideum cDNA clone:ddv9o05, 3' e... 1614 0.0 4 (BJ438855) Dictyostelium discoideum cDNA clone:ddv38n15, 3' ... 1608 0.0 3 (BJ442531) Dictyostelium discoideum cDNA clone:ddv50m05, 3' ... 1594 0.0 3 (BJ438064) Dictyostelium discoideum cDNA clone:ddv36b11, 3' ... 1594 0.0 2
dna update	2008.12.17
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC117081_29(AC117081\|pid:none) Dictyostelium discoideum chromoso... 160 1e-50 AC117081_21(AC117081\|pid:none) Dictyostelium discoideum chromoso... 160 2e-50 AL844502_159(AL844502\|pid:none) Plasmodium falciparum 3D7 chromo... 44 0.012 (P43040) RecName: Full=Uncharacterized protein MCAP_0005; AltNam... 40 0.17 AE017245_484(AE017245\|pid:none) Mycoplasma synoviae 53, complete... 39 0.49 CP001581_3540(CP001581\|pid:none) Clostridium botulinum A2 str. K... 37 1.4 AY587609_1(AY587609\|pid:none) Ascaridia galli lipid binding prot... 37 1.9 CP000383_328(CP000383\|pid:none) Cytophaga hutchinsonii ATCC 3340... 37 1.9 AF206632_1(AF206632\|pid:none) Plasmodium falciparum isolate FCC1... 37 1.9 CP001146_1446(CP001146\|pid:none) Dictyoglomus thermophilum H-6-1... 37 1.9
protein update	2009. 7.21
PSORT	psg: 0.26 gvh: 0.20 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.03 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: nuclear 32.0 %: cytoplasmic 8.0 %: cytoskeletal 4.0 %: mitochondrial >> prediction for VHP414 is nuc
5' end seq. ID	VHP414F
5' end seq.	>VHP414F.Seq ATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAATTC ACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACATGATGACATCGGTCC TTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCATAAACCATTGTGATATTACAAAC ATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAGAAAATCATTAAGAGATAATGAA GAACACTTAAATAAAGCACATGAAGAAATCAAAAATGCTTTAAATGGTGAAGAATGGATT ATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGATGAACATGTTAAAAAACAATTA GGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAGTAAATGTATTGTAAATGCATCA AAAGATGAATTAACTAAAGAATCAATCATTAATGCAAATACTGCTAAAAAGATTGTATTA ATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAAGTATGCATTTAATGGTGGTCAA TTAAATCTTTTATTCAANNNNNNNNNN
Length of 5' end seq.	567
3' end seq. ID	VHP414Z
3' end seq.	>VHP414Z.Seq NNNNNNNNNNGGTGGTAATTTAATCATCNCCTTTAAATCAATTTGTAATATCTCTGATAA TGCCAATTTCGATTTCATAAAGTCCTTCCAGTACCAGGTGTTTTCTCATTAGCTGCTAAA ATCAATTTGAAAGAGANCCAAGAGAAATTCGATACCGCTTTTGAAAGAATTAAAGAGGTC ACTAAAGTAGATTGGTCCTATGATGAGCAATCATTGGAAACTGTTTATCCAGCACTTGAA GAAAGAAATAAAGAAAGAATTGGTGACTTATTCCAAGAGATTATTAAATATGTCGCTGAT AATATCGTTAAACGTTGTAAAGAGGATATGGTTTTAGAAAGTTTCCTCGAAGCAACTTCA AATGCAAAGATTGTTTTCCGTCACAATGCCAAAGCAAACGGTTATTGGAATTGGAGTTTT GAAAACAATGATTTAGTAATCACCTTCAAATCAATTTGCAATGTTAGTGATAATGCAAAC TTTGATTTCATTAAAATTTTACCATCACCAGGTGTACTCACTTTAGCCTCTAGAATCAAT TTGAGAGAGAATCAAGAGAAAATCAATGAATCTTTCGAAAAGATTAAAGAAGTCTTGGGT AATGATTGGACTTATGATGAATCTTCAATCGAACAAGTTTATCCAAAATTAGAAGAAAAT AATAAACCACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTTACATCAGTCAAAATATC GTTAAAAGATGTAAAGATGATGATATGGTCAAAGAAGGTTTCGTTGAAGCAACTCAAAAT TGTAAAATCGTCTTCCAATTTGTTGAAAAACAAAGTTCTTATTGGGTTTGGAAATTCGAT GGTGGTAATTTAGTCGTATCATTCAAATCAATTTGTAATACTAGNATAATGCAAATTTCA ATTTNAAGCTCTCCTTTAAAATTA
Length of 3' end seq.	924
Connected seq. ID	VHP414P
Connected seq.	>VHP414P.Seq ATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCAAACTGCGATAATTC ACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTTGAACGCACATGATGACATCGGTCC TTTCGGATTAGGTGTTATACTTGGGTGAGAGTGGTCATAAACCATTGTGATATTACAAAC ATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAGAAAATCATTAAGAGATAATGAA GAACACTTAAATAAAGCACATGAAGAAATCAAAAATGCTTTAAATGGTGAAGAATGGATT ATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGATGAACATGTTAAAAAACAATTA GGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAGTAAATGTATTGTAAATGCATCA AAAGATGAATTAACTAAAGAATCAATCATTAATGCAAATACTGCTAAAAAGATTGTATTA ATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAAGTATGCATTTAATGGTGGTCAA TTAAATCTTTTATTCAA----------GGTGGTAATTTAATCATCNCCTTTAAATCAATT TGTAATATCTCTGATAATGCCAATTTCGATTTCATAAAGTCCTTCCAGTACCAGGTGTTT TCTCATTAGCTGCTAAAATCAATTTGAAAGAGANCCAAGAGAAATTCGATACCGCTTTTG AAAGAATTAAAGAGGTCACTAAAGTAGATTGGTCCTATGATGAGCAATCATTGGAAACTG TTTATCCAGCACTTGAAGAAAGAAATAAAGAAAGAATTGGTGACTTATTCCAAGAGATTA TTAAATATGTCGCTGATAATATCGTTAAACGTTGTAAAGAGGATATGGTTTTAGAAAGTT TCCTCGAAGCAACTTCAAATGCAAAGATTGTTTTCCGTCACAATGCCAAAGCAAACGGTT ATTGGAATTGGAGTTTTGAAAACAATGATTTAGTAATCACCTTCAAATCAATTTGCAATG TTAGTGATAATGCAAACTTTGATTTCATTAAAATTTTACCATCACCAGGTGTACTCACTT TAGCCTCTAGAATCAATTTGAGAGAGAATCAAGAGAAAATCAATGAATCTTTCGAAAAGA TTAAAGAAGTCTTGGGTAATGATTGGACTTATGATGAATCTTCAATCGAACAAGTTTATC CAAAATTAGAAGAAAATAATAAACCACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTT ACATCAGTCAAAATATCGTTAAAAGATGTAAAGATGATGATATGGTCAAAGAAGGTTTCG TTGAAGCAACTCAAAATTGTAAAATCGTCTTCCAATTTGTTGAAAAACAAAGTTCTTATT GGGTTTGGAAATTCGATGGTGGTAATTTAGTCGTATCATTCAAATCAATTTGTAATACTA GNATAATGCAAATTTCAATTTNAAGCTCTCCTTTAAAATTA
Length of connected seq.	1471
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas