VHP409
Library VH
(Link to library)
Clone ID VHP409
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16531-1
Original site URL
Representative seq. ID VHP409P
(Link to Original site)
Representative DNA sequence
>VHP409 (VHP409Q) /CSM/VH/VHP4-A/VHP409Q.Seq.d/
ATTAATCCATTCTCATTCCCCTATAAAGCATTGATGGCAAATGAATTTGGTGATATGAAT
TTCACATGTAATGATCAAACTGCAATTCCAAATGGTAATTACATTGCATCTAATGGTAGT
ACAATGTCTTATCAAGATCAATATAGAGCTTGTCCATCTGCCGGTGCTATCGAAGGTCAA
ATGGTTAATGGTGAATTTTATGTTGCTGGTTCAAACTATATAGATGCTGCACTTGATTTC
AAAAGTGATGACCGTACATTAAATGTCATTATCACTTTTTTATGGTGGATATTTTTTGTA
ATTATCAATATGATTGCTTTGGAATTATTCGATTGGACAAGTGGTGGTATGCCTCATAAA
GTCTATAAAAGAGGAAAGGCTCCTAAAATCAACGATGACGAAGAAGAGAGACAACAAAAT
GCAATGGTTGAAAATGCTACAAGTAAAATGAAAGATACTCTTAAAATGAGAGAAAGTTGT
TTCACTTGGAATCATATTCACTATACCGTTCAATTAAATGTCAAAGATTTATTATTGTTA
AATGATGTCGAAGGTTGGATTAAACCTGGTCAAATGACTGCATTAATGGGTTCATCTGGT
GCGGGTAAAAXXXXXXXXXXTATGAATCAACGTGTATTTTTCATATTTGAAATTCTTTTC
TTGGGTATTCTCTACATCTTTATTGCAATTCCTCAATTTTTAATTCAAAAAGCTTACTTT
AAGAAAGATTATGCCTCTAAATTTTATTCTTGGTATCCATTTGCCATTTCAATTGTCATT
GTTGAATTACCTTTTGTTGCAGTCGCTGGAACAATTTGTTTCTTTTGTTCTTTTTGGACA
GCAGGTATTTATTACAATGGTGAATATGATTTTTATTTTTATATAACTTTCATCCTCTTC
CTTTTCATTTGTGTTTCACTTGGTCAAGTTGTATCTGCCTTTTGTTTCAATGTTATGTTG
GCTCAAACAATTTTACCACTTTTATTAGTAATGTTATTTCTTTTTTGTGGAGTACTCGTT
CCTTATGAACAAATTCCAAACTTTTGGAAATTCGTTTATCATTCAAATCCATGCCGTTAT
TTCTTAGAAGGTGTTGTAACATCAGTTTTAAAGAATGTTTTTGTTGATTGTTCAAATGAA
GATTTAACCAAATTCTCAAACCCAACAAATTTAACCTGTAAAGAATATTTCAAGCCAACC
TATGGAAATGTTCGTGCTGTTACCAAAGGCGATGAAAGTGAATGTGGTTATTGTGTTTTT
AAATCAGGTGAAGAATATTATAAAACTCTTGGTTGGTCTTATGAAAACCGTTTAAGAAAC
TATGGTATTTTATGGGCTTTCTTTATTTTCAACATAATTA
sequence update 2002.10.25
Translated Amino Acid sequence
INPFSFPYKALMANEFGDMNFTCNDQTAIPNGNYIASNGSTMSYQDQYRACPSAGAIEGQ
MVNGEFYVAGSNYIDAALDFKSDDRTLNVIITFLWWIFFVIINMIALELFDWTSGGMPHK
VYKRGKAPKINDDEEERQQNAMVENATSKMKDTLKMRESCFTWNHIHYTVQLNVKDLLLL
NDVEGWIKPGQMTALMGSSGAGK---

---MNQRVFFIFEILFLGILYIFIAIPQFLIQKAYFKKDYASKFYSWYPFAISIVIVELP
FVAVAGTICFFCSFWTAGIYYNGEYDFYFYITFILFLFICVSLGQVVSAFCFNVMLAQTI
LPLLLVMLFLFCGVLVPYEQIPNFWKFVYHSNPCRYFLEGVVTSVLKNVFVDCSNEDLTK
FSNPTNLTCKEYFKPTYGNVRAVTKGDESECGYCVFKSGEEYYKTLGWSYENRLRNYGIL
WAFFIFNII


Translated Amino Acid sequence (All Frames)
Frame A:
INPFSFPYKALMANEFGDMNFTCNDQTAIPNGNYIASNGSTMSYQDQYRACPSAGAIEGQ
MVNGEFYVAGSNYIDAALDFKSDDRTLNVIITFLWWIFFVIINMIALELFDWTSGGMPHK
VYKRGKAPKINDDEEERQQNAMVENATSKMKDTLKMRESCFTWNHIHYTVQLNVKDLLLL
NDVEGWIKPGQMTALMGSSGAGK---

---yestcifhi*nsflgyslhlycnssifnsksll*erlcl*ilflvsichfnchc*it
fccsrwnnlfllffldsryllqw*i*flflynfhplpfhlcftwsscicllfqcyvgsnn
fttfisnvisflwstrsl*tnsklleirlsfksmplflrrccnisfkecfc*lfk*rfnq
ilkpnkfnl*rifqanlwkcsccyqrr*k*mwllcf*ir*ril*nswlvl*kpfkklwyf
mgflyfqhn

Frame B:
lihshspikh*wqmnlvi*ishvmiklqfqmvitlhlmvvqclikinielvhlpvlskvk
wlmvnfmllvqti*mlhliskvmtvh*mslslfyggyfl*lsi*llwnysigqvvvclik
sikeerllkstmtkkrdnkmqwlkmlqvk*killk*ekvvslgiiftipfn*mskiyyc*
mmskvglnlvk*lh*wvhlvrvk---

---MNQRVFFIFEILFLGILYIFIAIPQFLIQKAYFKKDYASKFYSWYPFAISIVIVELP
FVAVAGTICFFCSFWTAGIYYNGEYDFYFYITFILFLFICVSLGQVVSAFCFNVMLAQTI
LPLLLVMLFLFCGVLVPYEQIPNFWKFVYHSNPCRYFLEGVVTSVLKNVFVDCSNEDLTK
FSNPTNLTCKEYFKPTYGNVRAVTKGDESECGYCVFKSGEEYYKTLGWSYENRLRNYGIL
WAFFIFNII

Frame C:
*silipl*sidgk*iw*yefhm**sncnskw*lhci*w*ynvlsrsi*slsicrcyrrsn
g*w*ilccwfklyrcct*fqk**pyikchyhffmvdifcnyqydcfgiirldkwwyas*s
l*krkgs*nqr*rrrettkcng*kcyk*nerys*nerklfhlesyslyrsikcqrfiivk
*crrld*twsndcingfiwcg*---

---*invyfsylkffswvfstsllqflnf*fkkltlrkimplnfilgihlpfqlsllnyl
llqsleqfvsfvlfgqqvfitmvnmififi*lssssfsfvfhlvklylpfvsmlcwlkqf
yhfy**cyfffveysflmnkfqtfgnsfiiqihavis*kvl*hqf*rmfllivqmki*pn
sqtqqi*pvknissqpmemfvllpkamkvnvvivflnqvkniikllvglmktv*etmvfy
glslfst*l

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP409 (VHP409Q) /CSM/VH/VHP4-A/VHP409Q.Seq.d/ 2637 0.0
VHK247 (VHK247Q) /CSM/VH/VHK2-B/VHK247Q.Seq.d/ 1459 0.0
VHD255 (VHD255Q) /CSM/VH/VHD2-C/VHD255Q.Seq.d/ 1459 0.0
VHB406 (VHB406Q) /CSM/VH/VHB4-A/VHB406Q.Seq.d/ 1459 0.0
SHJ852 (SHJ852Q) /CSM/SH/SHJ8-C/SHJ852Q.Seq.d/ 1459 0.0
SFH120 (SFH120Q) /CSM/SF/SFH1-A/SFH120Q.Seq.d/ 1459 0.0
VHO511 (VHO511Q) /CSM/VH/VHO5-A/VHO511Q.Seq.d/ 1453 0.0
SHL514 (SHL514Q) /CSM/SH/SHL5-A/SHL514Q.Seq.d/ 1451 0.0
CHF640 (CHF640Q) /CSM/CH/CHF6-B/CHF640Q.Seq.d/ 1451 0.0
VHC854 (VHC854Q) /CSM/VH/VHC8-C/VHC854Q.Seq.d/ 1443 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ445904) Dictyostelium discoideum cDNA clone:ddv61b04, 3' ... 1467 0.0 1
(BJ442945) Dictyostelium discoideum cDNA clone:ddv51m12, 3' ... 1459 0.0 1
(BJ438352) Dictyostelium discoideum cDNA clone:ddv37m14, 3' ... 1459 0.0 1
(BJ437086) Dictyostelium discoideum cDNA clone:ddv33l02, 3' ... 1459 0.0 1
(BJ407769) Dictyostelium discoideum cDNA clone:dds43h14, 3' ... 1459 0.0 1
(BJ400847) Dictyostelium discoideum cDNA clone:dds15g05, 3' ... 1459 0.0 1
(BJ445610) Dictyostelium discoideum cDNA clone:ddv60e03, 3' ... 1453 0.0 1
(BJ408841) Dictyostelium discoideum cDNA clone:dds47k03, 3' ... 1451 0.0 1
(BJ378990) Dictyostelium discoideum cDNA clone:ddc33o10, 3' ... 1451 0.0 1
(BJ430425) Dictyostelium discoideum cDNA clone:ddv7p03, 3' e... 1439 0.0 1
dna update 2008.12.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF482389_1(AF482389|pid:none) Dictyostelium discoideum ABC trans... 406 e-111
AF482391_1(AF482391|pid:none) Dictyostelium discoideum ABC trans... 245 3e-63
AF482396_1(AF482396|pid:none) Dictyostelium discoideum ABC trans... 244 7e-63
AF482390_1(AF482390|pid:none) Dictyostelium discoideum ABC trans... 236 2e-60
AF037042_1(AF037042|pid:none) Dictyostelium discoideum ras-relat... 223 1e-56
AF482393_1(AF482393|pid:none) Dictyostelium discoideum ABC trans... 219 1e-55
AF482395_1(AF482395|pid:none) Dictyostelium discoideum ABC trans... 203 1e-50
AB091269_1(AB091269|pid:none) Magnaporthe grisea ABC2 gene for A... 111 5e-23
AM920427_990(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 108 6e-22
CU928176_508(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 107 1e-21
protein update 2009. 7.21
PSORT

psg: 0.77 gvh: 0.35 alm: 0.13 top: 0.63 tms: 0.33 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

48.0 %: plasma membrane
16.0 %: vacuolar
12.0 %: endoplasmic reticulum
8.0 %: mitochondrial
8.0 %: nuclear
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for VHP409 is pla

5' end seq. ID VHP409F
5' end seq.
>VHP409F.Seq
ATTAATCCATTCTCATTCCCCTATAAAGCATTGATGGCAAATGAATTTGGTGATATGAAT
TTCACATGTAATGATCAAACTGCAATTCCAAATGGTAATTACATTGCATCTAATGGTAGT
ACAATGTCTTATCAAGATCAATATAGAGCTTGTCCATCTGCCGGTGCTATCGAAGGTCAA
ATGGTTAATGGTGAATTTTATGTTGCTGGTTCAAACTATATAGATGCTGCACTTGATTTC
AAAAGTGATGACCGTACATTAAATGTCATTATCACTTTTTTATGGTGGATATTTTTTGTA
ATTATCAATATGATTGCTTTGGAATTATTCGATTGGACAAGTGGTGGTATGCCTCATAAA
GTCTATAAAAGAGGAAAGGCTCCTAAAATCAACGATGACGAAGAAGAGAGACAACAAAAT
GCAATGGTTGAAAATGCTACAAGTAAAATGAAAGATACTCTTAAAATGAGAGAAAGTTGT
TTCACTTGGAATCATATTCACTATACCGTTCAATTAAATGTCAAAGATTTATTATTGTTA
AATGATGTCGAAGGTTGGATTAAACCTGGTCAAATGACTGCATTAATGGGTTCATCTGGT
GCGGGTAAAANNNNNNNNNN
Length of 5' end seq. 620
3' end seq. ID VHP409Z
3' end seq.
>VHP409Z.Seq
NNNNNNNNNNTATGAATCAACGTGTATTTTTCATATTTGAAATTCTTTTCTTGGGTATTC
TCTACATCTTTATTGCAATTCCTCAATTTTTAATTCAAAAAGCTTACTTTAAGAAAGATT
ATGCCTCTAAATTTTATTCTTGGTATCCATTTGCCATTTCAATTGTCATTGTTGAATTAC
CTTTTGTTGCAGTCGCTGGAACAATTTGTTTCTTTTGTTCTTTTTGGACAGCAGGTATTT
ATTACAATGGTGAATATGATTTTTATTTTTATATAACTTTCATCCTCTTCCTTTTCATTT
GTGTTTCACTTGGTCAAGTTGTATCTGCCTTTTGTTTCAATGTTATGTTGGCTCAAACAA
TTTTACCACTTTTATTAGTAATGTTATTTCTTTTTTGTGGAGTACTCGTTCCTTATGAAC
AAATTCCAAACTTTTGGAAATTCGTTTATCATTCAAATCCATGCCGTTATTTCTTAGAAG
GTGTTGTAACATCAGTTTTAAAGAATGTTTTTGTTGATTGTTCAAATGAAGATTTAACCA
AATTCTCAAACCCAACAAATTTAACCTGTAAAGAATATTTCAAGCCAACCTATGGAAATG
TTCGTGCTGTTACCAAAGGCGATGAAAGTGAATGTGGTTATTGTGTTTTTAAATCAGGTG
AAGAATATTATAAAACTCTTGGTTGGTCTTATGAAAACCGTTTAAGAAACTATGGTATTT
TATGGGCTTTCTTTATTTTCAACATAATTA
Length of 3' end seq. 750
Connected seq. ID VHP409P
Connected seq.
>VHP409P.Seq
ATTAATCCATTCTCATTCCCCTATAAAGCATTGATGGCAAATGAATTTGGTGATATGAAT
TTCACATGTAATGATCAAACTGCAATTCCAAATGGTAATTACATTGCATCTAATGGTAGT
ACAATGTCTTATCAAGATCAATATAGAGCTTGTCCATCTGCCGGTGCTATCGAAGGTCAA
ATGGTTAATGGTGAATTTTATGTTGCTGGTTCAAACTATATAGATGCTGCACTTGATTTC
AAAAGTGATGACCGTACATTAAATGTCATTATCACTTTTTTATGGTGGATATTTTTTGTA
ATTATCAATATGATTGCTTTGGAATTATTCGATTGGACAAGTGGTGGTATGCCTCATAAA
GTCTATAAAAGAGGAAAGGCTCCTAAAATCAACGATGACGAAGAAGAGAGACAACAAAAT
GCAATGGTTGAAAATGCTACAAGTAAAATGAAAGATACTCTTAAAATGAGAGAAAGTTGT
TTCACTTGGAATCATATTCACTATACCGTTCAATTAAATGTCAAAGATTTATTATTGTTA
AATGATGTCGAAGGTTGGATTAAACCTGGTCAAATGACTGCATTAATGGGTTCATCTGGT
GCGGGTAAAA----------TATGAATCAACGTGTATTTTTCATATTTGAAATTCTTTTC
TTGGGTATTCTCTACATCTTTATTGCAATTCCTCAATTTTTAATTCAAAAAGCTTACTTT
AAGAAAGATTATGCCTCTAAATTTTATTCTTGGTATCCATTTGCCATTTCAATTGTCATT
GTTGAATTACCTTTTGTTGCAGTCGCTGGAACAATTTGTTTCTTTTGTTCTTTTTGGACA
GCAGGTATTTATTACAATGGTGAATATGATTTTTATTTTTATATAACTTTCATCCTCTTC
CTTTTCATTTGTGTTTCACTTGGTCAAGTTGTATCTGCCTTTTGTTTCAATGTTATGTTG
GCTCAAACAATTTTACCACTTTTATTAGTAATGTTATTTCTTTTTTGTGGAGTACTCGTT
CCTTATGAACAAATTCCAAACTTTTGGAAATTCGTTTATCATTCAAATCCATGCCGTTAT
TTCTTAGAAGGTGTTGTAACATCAGTTTTAAAGAATGTTTTTGTTGATTGTTCAAATGAA
GATTTAACCAAATTCTCAAACCCAACAAATTTAACCTGTAAAGAATATTTCAAGCCAACC
TATGGAAATGTTCGTGCTGTTACCAAAGGCGATGAAAGTGAATGTGGTTATTGTGTTTTT
AAATCAGGTGAAGAATATTATAAAACTCTTGGTTGGTCTTATGAAAACCGTTTAAGAAAC
TATGGTATTTTATGGGCTTTCTTTATTTTCAACATAATTA
Length of connected seq. 1350
Full length Seq ID -
Full length Seq. -
Length of full length seq. -