VHP407
Library VH
(Link to library)
Clone ID VHP407
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHP407P
(Link to Original site)
Representative DNA sequence
>VHP407 (VHP407Q) /CSM/VH/VHP4-A/VHP407Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCXXXXXXXXXXATCTCATCCAAAGA
TGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCACGAATGGGATAAAAATGATGC
CATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCAC
CAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGC
CACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGA
TGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCG
TCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTT
AGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCG
TAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGC
TCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGG
TCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGA
TAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAAT
CCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTNAGTTTTC
AAANATAGTAATCAAATCTAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVGNTEDKEFGDVTVS---

---ISSKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDS
FVGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASP
TLLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTA
DLRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*t
i*valxfsxivikskk


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklislsvellnpsmsllvtlkirnsvmslyp---

---ISSKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDS
FVGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASP
TLLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTA
DLRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*t
i*valxfsxivikskk

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*
rslslfp*sy*irqchcw*h*r*gir*chci---

---shpkmiqklvltislittngikmmp*tfglsvqkvtvpisssmspkvfni*mklkil
slvlsngppkkvlfvmkt*evsvsifmmspstlmpstevvvkssqllvvysmlln*lppq
ls*nqst**kllpqktllvvftlysivvevlllvknvvsvphyslskliyqy*npsvspl
iyvptlpvklshnvssiiglqlvlstkirkplksl*pperekv*pqksqiltnstknskq
fkshxsfqx**snlkk

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVGNTEDKEFGDVTVS---

---liqr*skssc*lsr**prmg*k*chehlvfrsrr*rcqsprqchqrcsife*n*rff
rwcfpmghqrrccl**kherypfqsl*chpph*chpqrwwsnhpncssctlcc*inclpn
slrtnllsrnycprkrywwyllctqss*rycyw*rtsyrfpiilcqssftsirilrfhr*
ftfphcrssfptmclrslgfnwccqqr*esh*srfshqkekrfsprnprs*qiprktlnn
lsrtxvfkxsnqi*kk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP407 (VHP407Q) /CSM/VH/VHP4-A/VHP407Q.Seq.d/ 2662 0.0
SHG458 (SHG458Q) /CSM/SH/SHG4-C/SHG458Q.Seq.d/ 2662 0.0
VHK367 (VHK367Q) /CSM/VH/VHK3-C/VHK367Q.Seq.d/ 2654 0.0
VHO567 (VHO567Q) /CSM/VH/VHO5-C/VHO567Q.Seq.d/ 1481 0.0
VHI467 (VHI467Q) /CSM/VH/VHI4-C/VHI467Q.Seq.d/ 1481 0.0
VHH680 (VHH680Q) /CSM/VH/VHH6-D/VHH680Q.Seq.d/ 1481 0.0
VHB313 (VHB313Q) /CSM/VH/VHB3-A/VHB313Q.Seq.d/ 1481 0.0
VHB194 (VHB194Q) /CSM/VH/VHB1-D/VHB194Q.Seq.d/ 1481 0.0
VHQ410 (VHQ410Q) /CSM/VH/VHQ4-A/VHQ410Q.Seq.d/ 1479 0.0
VHQ212 (VHQ212Q) /CSM/VH/VHQ2-A/VHQ212Q.Seq.d/ 1479 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ445956) Dictyostelium discoideum cDNA clone:ddv61n02, 3' ... 1481 0.0 1
(BJ445759) Dictyostelium discoideum cDNA clone:ddv60e17, 3' ... 1481 0.0 1
(BJ442990) Dictyostelium discoideum cDNA clone:ddv51f17, 3' ... 1481 0.0 1
(BJ441704) Dictyostelium discoideum cDNA clone:ddv47f18, 3' ... 1481 0.0 1
(BJ441516) Dictyostelium discoideum cDNA clone:ddv46o20, 3' ... 1481 0.0 1
(BJ437318) Dictyostelium discoideum cDNA clone:ddv33k23, 3' ... 1481 0.0 1
(BJ437076) Dictyostelium discoideum cDNA clone:ddv33j03, 3' ... 1481 0.0 1
(BJ406812) Dictyostelium discoideum cDNA clone:dds36d16, 3' ... 1481 0.0 1
(BJ446805) Dictyostelium discoideum cDNA clone:ddv63k21, 3' ... 1479 0.0 1
(BJ446590) Dictyostelium discoideum cDNA clone:ddv63o02, 3' ... 1479 0.0 1
dna update 2008.12.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 304 4e-81
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 303 1e-80
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 299 1e-79
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 298 3e-79
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 298 4e-79
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 298 4e-79
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w... 298 4e-79
(P05197) RecName: Full=Elongation factor 2; Short=EF-2;... 298 4e-79
AJ278147_1(AJ278147|pid:none) Rattus norvegicus partial Ef-2 gen... 298 4e-79
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 298 4e-79
protein update 2009. 7.21
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHP407 is cyt

5' end seq. ID VHP407F
5' end seq.
>VHP407F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCNNNNNNNNNN
Length of 5' end seq. 646
3' end seq. ID VHP407Z
3' end seq.
>VHP407Z.Seq
NNNNNNNNNNATCTCATCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAA
CCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGG
TGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTC
TTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAG
AGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGG
TGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCC
AACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGG
TATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGG
TTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGC
TGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGC
TTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAA
GAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAAC
AATTTAAGTCGCACTTNAGTTTTCAAANATAGTAATCAAATCTAAAAAAAA
Length of 3' end seq. 771
Connected seq. ID VHP407P
Connected seq.
>VHP407P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCC----------ATCTCATCCAAAGA
TGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCACGAATGGGATAAAAATGATGC
CATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCAC
CAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGC
CACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGA
TGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCG
TCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTT
AGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCG
TAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGC
TCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGG
TCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGA
TAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAAT
CCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTNAGTTTTC
AAANATAGTAATCAAATCTAAAAAAAA
Length of connected seq. 1397
Full length Seq ID -
Full length Seq. -
Length of full length seq. -