VHP405 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHP405
Library	VH (Link to library)
Clone ID	VHP405 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16260-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHP4-A/VHP405Q.Seq.d/
Representative seq. ID	VHP405P (Link to Original site)
Representative DNA sequence	>VHP405 (VHP405Q) /CSM/VH/VHP4-A/VHP405Q.Seq.d/ AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGGAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAXXXXXXXXXXATCTCGCTGATAACCACGAATGGGAT AAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTC GTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCT TTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTC AATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATC CCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAA CCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTA CTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTC TCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCC CACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTT GTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTA GCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCA CTTNAGTTTTCAAANATAGAATCAAATCTAAAAAAAA
sequence update	2002.10.25
Translated Amino Acid sequence	LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFR--- ---LADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGV VCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITA PENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQ CVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLtivalxfsxiesn lkk
Translated Amino Acid sequence (All Frames)	Frame A: nsrvqkkstkwlisqsikfvplwtvvkisgicllllmsitvkplyqilskelvllpik flvidichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnfsilsipqvtlis vqkllpsvllmvlslsiaskvfaykpklyyvkpslnvsnqsysstksivsynsntl kklislsv--- ---islittngikmmptfglsvqkvtvpisssmspkvfnimklkilslvlsngppkkv lfvmktevsvsifmmspstlmpstevvvkssqllvvysmllnlppqlsnqstkll pqktllvvftlysivvevlllvknvvsvphyslskliyqynpsvspliyvptlpvklsh nvssiiglqlvlstkirkplkslpperekvpqksqiltnstknskqfkshxsfqxnq ikk Frame B: tleckkskvqngfhnrsnschygpskyqeyvcycscrsrnhfirffnpkswyycrs fwyeiyvmsctrawyhhificitslrnakgrqitswlyftrifnqsyrfprsrfq frsnccppcywcfsryrlrrrclrtnrncitssrrtyqtslirqqsrsflirtpikh rslslfp--- ---sr*prmgkchehlvfrsrrrcqsprqchqrcsifenrffrwcfpmghqrrc cl*kherypfqslchpphchpqrwwsnhpncssctlccinclpnslrtnllsrnyc prkrywwyllctqssrycywrtsyrfpiilcqssftsirilrfhrftfphcrssfpt mclrslgfnwccqqreshsrfshqkekrfsprnprsqiprktlnnlsrtxvfkxrik skk Frame C: LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFR--- ---LADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGV VCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITA PENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQ CVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLtivalxfsxiesn lkk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHP405 (VHP405Q) /CSM/VH/VHP4-A/VHP405Q.Seq.d/ 2444 0.0 VHQ293 (VHQ293Q) /CSM/VH/VHQ2-D/VHQ293Q.Seq.d/ 1405 0.0 VHP730 (VHP730Q) /CSM/VH/VHP7-B/VHP730Q.Seq.d/ 1405 0.0 VHP357 (VHP357Q) /CSM/VH/VHP3-C/VHP357Q.Seq.d/ 1405 0.0 VHN889 (VHN889Q) /CSM/VH/VHN8-D/VHN889Q.Seq.d/ 1405 0.0 VHN855 (VHN855Q) /CSM/VH/VHN8-C/VHN855Q.Seq.d/ 1405 0.0 VHK894 (VHK894Q) /CSM/VH/VHK8-D/VHK894Q.Seq.d/ 1405 0.0 VHK419 (VHK419Q) /CSM/VH/VHK4-A/VHK419Q.Seq.d/ 1405 0.0 VHK162 (VHK162Q) /CSM/VH/VHK1-C/VHK162Q.Seq.d/ 1405 0.0 VHJ786 (VHJ786Q) /CSM/VH/VHJ7-D/VHJ786Q.Seq.d/ 1405 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446797) Dictyostelium discoideum cDNA clone:ddv63i24, 3' ... 1405 0.0 1 (BJ446334) Dictyostelium discoideum cDNA clone:ddv62l07, 3' ... 1405 0.0 1 (BJ446055) Dictyostelium discoideum cDNA clone:ddv61b15, 3' ... 1405 0.0 1 (BJ445936) Dictyostelium discoideum cDNA clone:ddv61j02, 3' ... 1405 0.0 1 (BJ445199) Dictyostelium discoideum cDNA clone:ddv58b24, 3' ... 1405 0.0 1 (BJ445176) Dictyostelium discoideum cDNA clone:ddv58n14, 3' ... 1405 0.0 1 (BJ443434) Dictyostelium discoideum cDNA clone:ddv52l24, 3' ... 1405 0.0 1 (BJ443011) Dictyostelium discoideum cDNA clone:ddv51k15, 3' ... 1405 0.0 1 (BJ442821) Dictyostelium discoideum cDNA clone:ddv51f06, 3' ... 1405 0.0 1 (BJ442773) Dictyostelium discoideum cDNA clone:ddv50m24, 3' ... 1405 0.0 1
dna update	2008.12.17
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AY391422_1(AY391422\|pid:none) Danio rerio eukaryotic translation... 291 3e-77 BT071866_1(BT071866\|pid:none) Salmo salar clone ssal-rgf-501-088... 290 8e-77 BT059038_1(BT059038\|pid:none) Salmo salar clone ssal-rgf-521-328... 290 8e-77 BT045031_1(BT045031\|pid:none) Salmo salar clone ssal-rgf-510-120... 290 1e-76 AY069933_1(AY069933\|pid:none) Rana sylvatica eukaryotic translat... 289 1e-76 BT072304_1(BT072304\|pid:none) Salmo salar clone ssal-rgf-520-280... 289 2e-76 BC089730_1(BC089730\|pid:none) Xenopus tropicalis MGC108369 prote... 287 7e-76 BC060707_1(BC060707\|pid:none) Mus musculus eukaryotic translatio... 285 3e-75 AK161993_1(AK161993\|pid:none) Mus musculus 12 days embryo male w... 285 3e-75 AK298498_1(AK298498\|pid:none) Homo sapiens cDNA FLJ56548 complet... 285 3e-75
protein update	2009. 7.21
PSORT	psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00 nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: cytoplasmic 36.0 %: nuclear 4.0 %: extracellular, including cell wall 4.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for VHP405 is cyt
5' end seq. ID	VHP405F
5' end seq.	>VHP405F.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGGAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTANNNNNNNNNN
Length of 5' end seq.	574
3' end seq. ID	VHP405Z
3' end seq.	>VHP405Z.Seq NNNNNNNNNNATCTCGCTGATAACCACGAATGGGATAAAAATGATGCCATGAACATTTGG TCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAA TATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGT GTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCAC ACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTAT GCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACT GCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTT ATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTA TTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCA CAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACT GAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGAC AAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTNAGTTTTCAAANATAGAATCA AATCTAAAAAAAA
Length of 3' end seq.	733
Connected seq. ID	VHP405P
Connected seq.	>VHP405P.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGGAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTA----------ATCTCGCTGATAACCACGAATGGGAT AAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCTC GTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCT TTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTC AATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATC CCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAGAA CCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTA CTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTC TCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCC CACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTT GTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTA GCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCA CTTNAGTTTTCAAANATAGAATCAAATCTAAAAAAAA
Length of connected seq.	1287
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas