VHP402 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHP402
Library	VH (Link to library)
Clone ID	VHP402 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16260-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHP4-A/VHP402Q.Seq.d/
Representative seq. ID	VHP402P (Link to Original site)
Representative DNA sequence	>VHP402 (VHP402Q) /CSM/VH/VHP4-A/VHP402Q.Seq.d/ AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTGCCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAGXXXXXXXXXXTCTCATCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCT GATAACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGT AACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAA GATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAAC ATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGA GGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCC TCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATT GGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGT ATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTC ACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCAT TGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACC AGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTC TAAACAATTTAAGTCGCACTTNNAGTTTTCAAA
sequence update	2002.10.25
Translated Amino Acid sequence	LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFRRAIESVNVIVGNTE--- ---SSKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSF VGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPT LLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTAD LRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLti valxvfk
Translated Amino Acid sequence (All Frames)	Frame A: nsrvqkkstkwlisqsikfvplwtvvkiseicllllmsitvkplyqilskelvllpik flvidichvvlmnksvvsplnlhlyhftskcqrktncqlvvlhtnfsilsipqvtlis vqkllpsvllmvlslsiaskvfaykpklyyvkpslnvsnqsysstksivsynsntl kklislsvellnpsmsllvtlk--- ---shpkmiqklvltislittngikmmptfglsvqkvtvpisssmspkvfnimklkil slvlsngppkkvlfvmktevsvsifmmspstlmpstevvvkssqllvvysmllnlppq lsnqstkllpqktllvvftlysivvevlllvknvvsvphyslskliyqynpsvspl iyvptlpvklshnvssiiglqlvlstkirkplkslpperekvpqksqiltnstknskq fkshxxfs Frame B: tleckkskvqngfhnrsnschygpskyqkyvcycscrsrnhfirffnpkswyycrs fwyeiyvmsctrawyhhificitslrnakgrqiaswlyftrifnqsyrfprsrfq frsnccppcywcfsryrlrrrclrtnrncitssrrtyqtslirqqsrsflirtpikh rslslfpsyirqchcwh--- ---liqrskssclsr*prmgkchehlvfrsrrrcqsprqchqrcsifenrff rwcfpmghqrrccl*kherypfqslchpphchpqrwwsnhpncssctlccinclpn slrtnllsrnycprkrywwyllctqssrycywrtsyrfpiilcqssftsirilrfhr* ftfphcrssfptmclrslgfnwccqqreshsrfshqkekrfsprnprsqiprktlnn lsrtxsfq Frame C: LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE EAYLSFRRAIESVNVIVGNTE--- ---SSKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSF VGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPT LLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTAD LRSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLti *valxvfk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHP402 (VHP402Q) /CSM/VH/VHP4-A/VHP402Q.Seq.d/ 2571 0.0 VHJ420 (VHJ420Q) /CSM/VH/VHJ4-A/VHJ420Q.Seq.d/ 2563 0.0 VHD770 (VHD770Q) /CSM/VH/VHD7-C/VHD770Q.Seq.d/ 2557 0.0 VHC170 (VHC170Q) /CSM/VH/VHC1-C/VHC170Q.Seq.d/ 2557 0.0 VHQ446 (VHQ446Q) /CSM/VH/VHQ4-B/VHQ446Q.Seq.d/ 1449 0.0 VHP478 (VHP478Q) /CSM/VH/VHP4-D/VHP478Q.Seq.d/ 1449 0.0 VHO715 (VHO715Q) /CSM/VH/VHO7-A/VHO715Q.Seq.d/ 1449 0.0 VHK821 (VHK821Q) /CSM/VH/VHK8-A/VHK821Q.Seq.d/ 1449 0.0 VHK634 (VHK634Q) /CSM/VH/VHK6-B/VHK634Q.Seq.d/ 1449 0.0 VHK494 (VHK494Q) /CSM/VH/VHK4-D/VHK494Q.Seq.d/ 1449 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446651) Dictyostelium discoideum cDNA clone:ddv63l12, 3' ... 1449 0.0 1 (BJ446177) Dictyostelium discoideum cDNA clone:ddv61l20, 3' ... 1449 0.0 1 (BJ445910) Dictyostelium discoideum cDNA clone:ddv61d02, 3' ... 1449 0.0 1 (BJ445650) Dictyostelium discoideum cDNA clone:ddv60n03, 3' ... 1449 0.0 1 (BJ443220) Dictyostelium discoideum cDNA clone:ddv52c10, 3' ... 1449 0.0 1 (BJ443175) Dictyostelium discoideum cDNA clone:ddv52j06, 3' ... 1449 0.0 1 (BJ443101) Dictyostelium discoideum cDNA clone:ddv51l24, 3' ... 1449 0.0 1 (BJ443012) Dictyostelium discoideum cDNA clone:ddv51k16, 3' ... 1449 0.0 1 (BJ442433) Dictyostelium discoideum cDNA clone:ddv49i24, 3' ... 1449 0.0 1 (BJ442186) Dictyostelium discoideum cDNA clone:ddv49h06, 3' ... 1449 0.0 1
dna update	2008.12.17
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AY391422_1(AY391422\|pid:none) Danio rerio eukaryotic translation... 303 1e-80 FJ790217_1(FJ790217\|pid:none) Homarus americanus elongation fact... 303 1e-80 AY069933_1(AY069933\|pid:none) Rana sylvatica eukaryotic translat... 301 3e-80 BC089730_1(BC089730\|pid:none) Xenopus tropicalis MGC108369 prote... 298 3e-79 BT045031_1(BT045031\|pid:none) Salmo salar clone ssal-rgf-510-120... 297 7e-79 BC060707_1(BC060707\|pid:none) Mus musculus eukaryotic translatio... 296 9e-79 AK161993_1(AK161993\|pid:none) Mus musculus 12 days embryo male w... 296 9e-79 AK032997_1(AK032997\|pid:none) Mus musculus 12 days embryo male w... 296 9e-79 (P05197) RecName: Full=Elongation factor 2; Short=EF-2;... 296 9e-79 AJ278147_1(AJ278147\|pid:none) Rattus norvegicus partial Ef-2 gen... 296 9e-79
protein update	2009. 7.27
PSORT	psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00 nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: cytoplasmic 36.0 %: nuclear 4.0 %: extracellular, including cell wall 4.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for VHP402 is cyt
5' end seq. ID	VHP402F
5' end seq.	>VHP402F.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTGCCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAGNNNNNNNNNN
Length of 5' end seq.	616
3' end seq. ID	VHP402Z
3' end seq.	>VHP402Z.Seq NNNNNNNNNNTCTCATCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAAC CACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGT GCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCT TTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGA GGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGT GGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCA ACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGT ATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGT TCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCT GATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCT TCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAG AGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACA ATTTAAGTCGCACTTNNAGTTTTCAAA
Length of 3' end seq.	747
Connected seq. ID	VHP402P
Connected seq.	>VHP402P.Seq AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTGCCAGCTG GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA CTGAAG----------TCTCATCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCT GATAACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGT AACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAA GATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAAC ATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGA GGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCC TCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATT GGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGT ATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTC ACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCAT TGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACC AGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTC TAAACAATTTAAGTCGCACTTNNAGTTTTCAAA
Length of connected seq.	1343
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas