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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP387
Library VH
(Link to library)
Clone ID VHP387
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11459-1
Original site URL
Representative seq. ID VHP387P
(Link to Original site)
Representative DNA sequence 
>VHP387 (VHP387Q) /CSM/VH/VHP3-D/VHP387Q.Seq.d/
ATTTTTTGATTATTCATATTCATATATATAGAATTTCAATAGGATACGAATATGAGTAGT
GGAATATCATTTGCAAGAAATCTACATATTAGAATTAAAAATGGTGTTACATCAGCACCA
TTTGGTTATGCATCAGTATTGAAATTTGGTATACCAGTGATACCACCAAGAACTCCAGGT
AAAATTGAAGTTATTGAATCACCAATTTTAAAATATGCACAAGAATTTGCTGATAGTCAT
CGTGAAATTGGCTATTTAACAGATAATCGTTTATCACAAGATGCATACAATTATGCAAGT
TTAAAACTTTCATACATGAAAAAAGGTTTAAGTGAATCACAAGCTAATACACAAGCAAAA
AAAGATGTTATAAAAAATTTAGAAGTTCGTTCATTAGAGTTGGATCTCATTCAAAATCAA
GCCCTTAAAATTGGTATTCCATCTTTTCAACCAAAATCTCATTTAGAACAAATTAATACT
TTAACAAAAAAAAGTTGAAGATCGTAGAGCAGAATATGAAATTATTGAAGCAAGAGAAAA
ATTAGAXXXXXXXXXXGTCTCATCTCTCAACAAGANGCCTTTGAATTTACAAATTACATC
AACTACTTAAAGGACCAGTTCCTGCTACTTCTCCAATCATTCAATCTCTTAAATCTTCAA
TTCATATGAAATCAAATAACAATGAACTCATCGATCAATTCAATGCTGAATCTTTAGAAA
AAGATNCCACCACCACCGATAAACTCTCCCCTGAAGGTNNGTTCTTTAAGCA
sequence update 2002.10.25
Translated Amino Acid sequence 
ffdysysyi*nfnriri*vveyhlqeiyilelkmvlhqhhlvmhqy*nlvyq*yhqelqv
klkllnhqf*nmhknllivivklai*qiivyhkmhtimqv*nfht*kkv*vnhklihkqk
kml*ki*kfvh*swisfkikplklvfhlfnqnli*nklil*QKKVEDRRAEYEIIEAREK
L---

---LISQQXAFEFTNYINYLKDQFLLLLQSFNLLNLQFI*nqitmnssinsmlnl*kkxp
pppinsplkvxsls
Translated Amino Acid sequence (All Frames) 
Frame A:
if*lfifiyiefq*dtnmssgisfarnlhirikngvtsapfgyasvlkfgipvipprtpg
kieviespilkyaqefadshreigyltdnrlsqdaynyaslklsymkkglsesqantqak
kdviknlevrsleldliqnqalkigipsfqpkshleqintltkks*rs*sri*ny*skrk
ir---

---vsslnkxplnlqitstt*rtsscyfsnhsis*ifnsyeik*q*thrsiqc*ifrkrx
hhhr*tlp*rxvl*a

Frame B:
ffdysysyi*nfnriri*vveyhlqeiyilelkmvlhqhhlvmhqy*nlvyq*yhqelqv
klkllnhqf*nmhknllivivklai*qiivyhkmhtimqv*nfht*kkv*vnhklihkqk
kml*ki*kfvh*swisfkikplklvfhlfnqnli*nklil*QKKVEDRRAEYEIIEAREK
L---

---shlstrxl*iyklhqllkgpvpatspiiqslkssihmksnnnelidqfnaeslekdx
tttdklspegxffk

Frame C:
fliihihiyrisigyeye*wniickksty*n*kwcyistiwlcisieiwytsdttknsr*
n*sy*itnfkictric**ss*nwlfnr*sfitrciqlckfktfihekrfk*its*ytskk
rcykkfrssfirvgshskssp*nwysifstkisfrtn*yfnkkklkiveqnmkllkqekn
*---

---LISQQXAFEFTNYINYLKDQFLLLLQSFNLLNLQFI*nqitmnssinsmlnl*kkxp
pppinsplkvxsls
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP387 (VHP387Q) /CSM/VH/VHP3-D/VHP387Q.Seq.d/                       1358   0.0
VHG269 (VHG269Q) /CSM/VH/VHG2-C/VHG269Q.Seq.d/                        975   0.0
VHA130 (VHA130Q) /CSM/VH/VHA1-B/VHA130Q.Seq.d/                        975   0.0
SHK605 (SHK605Q) /CSM/SH/SHK6-A/SHK605Q.Seq.d/                        975   0.0
VHM828 (VHM828Q) /CSM/VH/VHM8-B/VHM828Q.Seq.d/                        971   0.0
VHO315 (VHO315Q) /CSM/VH/VHO3-A/VHO315Q.Seq.d/                        944   0.0
VHA418 (VHA418Q) /CSM/VH/VHA4-A/VHA418Q.Seq.d/                        938   0.0
VHN232 (VHN232Q) /CSM/VH/VHN2-B/VHN232Q.Seq.d/                        936   0.0
VHN206 (VHN206Q) /CSM/VH/VHN2-A/VHN206Q.Seq.d/                        920   0.0
VHJ178 (VHJ178Q) /CSM/VH/VHJ1-D/VHJ178Q.Seq.d/                        878   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ427288) Dictyostelium discoideum cDNA clone:ddv61n21, 5' ...   706   0.0    3
(BJ421722) Dictyostelium discoideum cDNA clone:ddv43i18, 5' ...   706   0.0    3
(BJ418019) Dictyostelium discoideum cDNA clone:ddv31k07, 5' ...   706   0.0    3
(BJ397110) Dictyostelium discoideum cDNA clone:dds45i02, 5' ...   706   0.0    3
(BJ425626) Dictyostelium discoideum cDNA clone:ddv56h08, 5' ...   702   0.0    3
(BJ426487) Dictyostelium discoideum cDNA clone:ddv59n03, 5' ...   674   0.0    3
(BJ417916) Dictyostelium discoideum cDNA clone:ddv31d06, 5' ...   668   0.0    3
(BJ425899) Dictyostelium discoideum cDNA clone:ddv57o08, 5' ...   666   0.0    3
(BJ426096) Dictyostelium discoideum cDNA clone:ddv57k02, 5' ...   630   0.0    4
(BJ423631) Dictyostelium discoideum cDNA clone:ddv49k19, 5' ...   698   0.0    3
dna update 2008.12.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF600047_1(EF600047|pid:none) Helicoverpa armigera multi-domain ...    37   0.69
EU325561_1(EU325561|pid:none) Helicoverpa armigera clone HaC5S00...    37   0.69
EU325566_1(EU325566|pid:none) Helicoverpa armigera clone CA707 p...    37   0.69
(Q80TM6) RecName: Full=R3H domain-containing protein 2;                35   3.5
AK122416_1(AK122416|pid:none) Mus musculus mRNA for mKIAA1002 pr...    35   3.5
CP000672_1352(CP000672|pid:none) Haemophilus influenzae PittGG, ...    34   4.5
(P44941) RecName: Full=Uncharacterized protein HI0933;  &G64161(...    34   4.5
(Q02852) RecName: Full=ATP synthase B' chain, chloroplastic; Alt...    34   5.9
CP001185_1282(CP001185|pid:none) Thermosipho africanus TCF52B, c...    34   5.9
CP000383_1694(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    33   7.7
protein update 2009. 3.17
PSORT 

 psg: 0.45  gvh: 0.70  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VHP387 is cyt
5' end seq. ID VHP387F
5' end seq. 
>VHP387F.Seq
ATTTTTTGATTATTCATATTCATATATATAGAATTTCAATAGGATACGAATATGAGTAGT
GGAATATCATTTGCAAGAAATCTACATATTAGAATTAAAAATGGTGTTACATCAGCACCA
TTTGGTTATGCATCAGTATTGAAATTTGGTATACCAGTGATACCACCAAGAACTCCAGGT
AAAATTGAAGTTATTGAATCACCAATTTTAAAATATGCACAAGAATTTGCTGATAGTCAT
CGTGAAATTGGCTATTTAACAGATAATCGTTTATCACAAGATGCATACAATTATGCAAGT
TTAAAACTTTCATACATGAAAAAAGGTTTAAGTGAATCACAAGCTAATACACAAGCAAAA
AAAGATGTTATAAAAAATTTAGAAGTTCGTTCATTAGAGTTGGATCTCATTCAAAATCAA
GCCCTTAAAATTGGTATTCCATCTTTTCAACCAAAATCTCATTTAGAACAAATTAATACT
TTAACAAAAAAAAGTTGAAGATCGTAGAGCAGAATATGAAATTATTGAAGCAAGAGAAAA
ATTAGANNNNNNNNNN
Length of 5' end seq. 556
3' end seq. ID VHP387Z
3' end seq. 
>VHP387Z.Seq
NNNNNNNNNNGTCTCATCTCTCAACAAGANGCCTTTGAATTTACAAATTACATCAACTAC
TTAAAGGACCAGTTCCTGCTACTTCTCCAATCATTCAATCTCTTAAATCTTCAATTCATA
TGAAATCAAATAACAATGAACTCATCGATCAATTCAATGCTGAATCTTTAGAAAAAGATN
CCACCACCACCGATAAACTCTCCCCTGAAGGTNNGTTCTTTAAGCA
Length of 3' end seq. 226
Connected seq. ID VHP387P
Connected seq. 
>VHP387P.Seq
ATTTTTTGATTATTCATATTCATATATATAGAATTTCAATAGGATACGAATATGAGTAGT
GGAATATCATTTGCAAGAAATCTACATATTAGAATTAAAAATGGTGTTACATCAGCACCA
TTTGGTTATGCATCAGTATTGAAATTTGGTATACCAGTGATACCACCAAGAACTCCAGGT
AAAATTGAAGTTATTGAATCACCAATTTTAAAATATGCACAAGAATTTGCTGATAGTCAT
CGTGAAATTGGCTATTTAACAGATAATCGTTTATCACAAGATGCATACAATTATGCAAGT
TTAAAACTTTCATACATGAAAAAAGGTTTAAGTGAATCACAAGCTAATACACAAGCAAAA
AAAGATGTTATAAAAAATTTAGAAGTTCGTTCATTAGAGTTGGATCTCATTCAAAATCAA
GCCCTTAAAATTGGTATTCCATCTTTTCAACCAAAATCTCATTTAGAACAAATTAATACT
TTAACAAAAAAAAGTTGAAGATCGTAGAGCAGAATATGAAATTATTGAAGCAAGAGAAAA
ATTAGA----------GTCTCATCTCTCAACAAGANGCCTTTGAATTTACAAATTACATC
AACTACTTAAAGGACCAGTTCCTGCTACTTCTCCAATCATTCAATCTCTTAAATCTTCAA
TTCATATGAAATCAAATAACAATGAACTCATCGATCAATTCAATGCTGAATCTTTAGAAA
AAGATNCCACCACCACCGATAAACTCTCCCCTGAAGGTNNGTTCTTTAAGCA
Length of connected seq. 762
Full length Seq ID -
Full length Seq. -
Length of full length seq. -