VHP359
Library VH
(Link to library)
Clone ID VHP359
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15950-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHP359 (VHP359Q) /CSM/VH/VHP3-C/VHP359Q.Seq.d/
XXXXXXXXXXGGCTTATAGTGCAGTTTTACCAGTTCGTATTATCTTGTTGCTATTTGGTG
CAGGTGCTGTCGAAGGTTCATGTCGTTGGTGGTCAAGAGATCATCGTGCTCATCATCGTT
ATCTCGATACTGATAAAGATCCATATTCAGCTTCATTGGGTTTCTGGCATTCCCATTTCA
TTTGGTTAATGTTCAAACAAGATCCAAAGAAAATCGGTAGAGCAAACATTGACGACCTTA
ACGCCGATCCATGGGTTATGTGGCAACATAAACATTACATTAAAATCGCCACTTTTATGG
GTCTCGTTTTCCCAACATTGGTAGCTGGTTTAGGTTGGGGTGATTGGGCTGGTGGTTATT
TCTACTCTGGTGTACTTCGTCTCGTTACAGTTCAACATTCCACATTCTTGGTCAATTCAT
TGGCTCATTATTTAGGTGACTCTCCATACGATGATGAACATACTCCAAAGGATTCAGTTG
TGACTGCTATATTAACATTTGGTGAAGGTTATCATAACTTCCATCATGAATTCCCAAATG
ACTATAGAAACGCTTATAAATTCTATCAATATGATCCAACTAAATGGTTGAT
sequence update 2002. 9.10
Translated Amino Acid sequence
---AYSAVLPVRIILLLFGAGAVEGSCRWWSRDHRAHHRYLDTDKDPYSASLGFWHSHFI
WLMFKQDPKKIGRANIDDLNADPWVMWQHKHYIKIATFMGLVFPTLVAGLGWGDWAGGYF
YSGVLRLVTVQHSTFLVNSLAHYLGDSPYDDEHTPKDSVVTAILTFGEGYHNFHHEFPND
YRNAYKFYQYDPTKWL


Translated Amino Acid sequence (All Frames)
Frame A:
---AYSAVLPVRIILLLFGAGAVEGSCRWWSRDHRAHHRYLDTDKDPYSASLGFWHSHFI
WLMFKQDPKKIGRANIDDLNADPWVMWQHKHYIKIATFMGLVFPTLVAGLGWGDWAGGYF
YSGVLRLVTVQHSTFLVNSLAHYLGDSPYDDEHTPKDSVVTAILTFGEGYHNFHHEFPND
YRNAYKFYQYDPTKWL


Frame B:
---livqfyqfvlsccylvqvlskvhvvggqeiivliivisilikihiqlhwvsgipisf
g*csnkiqrksveqtlttltpihglcgninitlkspllwvsfsqhw*lv*vgviglvvis
tlvyfvslqfniphswsihwlii*vtlhtmmnilqriql*lly*hlvkviitsimnsqmt
ietlinsinmiqlng*


Frame C:
---l*csftssyylvaiwcrccrrfmslvvkrsscssslsry**rsifsfigflafpfhl
vnvqtrskenr*skh*rp*rrsmgyvat*tlh*nrhfygsrfpnigswfrlg*lgwwlfl
lwctssrysstfhilgqfigslfr*lsir**tyskgfscdcyiniw*rls*lps*ipk*l
*krl*ilsi*sn*mvd


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP359 (VHP359Q) /CSM/VH/VHP3-C/VHP359Q.Seq.d/ 1154 0.0
VHP282 (VHP282Q) /CSM/VH/VHP2-D/VHP282Q.Seq.d/ 1154 0.0
VHI633 (VHI633Q) /CSM/VH/VHI6-B/VHI633Q.Seq.d/ 1142 0.0
VFA222 (VFA222Q) /CSM/VF/VFA2-A/VFA222Q.Seq.d/ 1126 0.0
VFM428 (VFM428Q) /CSM/VF/VFM4-B/VFM428Q.Seq.d/ 1096 0.0
VHK887 (VHK887Q) /CSM/VH/VHK8-D/VHK887Q.Seq.d/ 1094 0.0
VHE611 (VHE611Q) /CSM/VH/VHE6-A/VHE611Q.Seq.d/ 1072 0.0
VHL555 (VHL555Q) /CSM/VH/VHL5-C/VHL555Q.Seq.d/ 1059 0.0
VHB725 (VHB725Q) /CSM/VH/VHB7-B/VHB725Q.Seq.d/ 1053 0.0
VHF376 (VHF376Q) /CSM/VH/VHF3-D/VHF376Q.Seq.d/ 1051 0.0

own update 2004. 5.28
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 1154 0.0 1
AL033501|AL033501.1 C.albicans cosmid Ca41C10. 72 9e-09 1
AL396412|AL396412.1 T3 end of clone AR0AA030B05 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 54 1e-08 2
AF026401|AF026401.1 Mucor rouxii stearoyl-CoA desaturase (Ole1) gene, complete cds. 42 2e-08 5
BM634131|BM634131.1 17000668813253 A.Gam.ad.cDNA1 Anopheles gambiae cDNA clone 19600448419669 5', mRNA sequence. 54 6e-07 2
AL392980|AL392980.1 T3 end of clone AR0AA008A11 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 44 9e-06 2
Z72577|Z72577.1 S.cerevisiae chromosome VII reading frame ORF YGL055w. 60 3e-05 1
AQ874658|AQ874658.1 V112D8 mTn-3xHA/lacZ Insertion Library, strain Y2278 Saccharomyces cerevisiae genomic 5', genomic survey sequence. 60 3e-05 1
AR016873|AR016873.1 Sequence 1 from patent US 5777201. 60 3e-05 1
J05676|J05676.1 Saccharomyces cerevisiae delta-9 fatty acid desaturase (OLE1) gene, complete cds. 60 3e-05 1
dna update 2003.10.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116984_117(AC116984|pid:none) Dictyostelium discoideum chromos... 424 e-118
EU857727_1(EU857727|pid:none) Hortaea werneckii delta-9 desatura... 299 4e-80
AY576801_1(AY576801|pid:none) Hortaea werneckii putative delta-9... 299 4e-80
DQ901954_1(DQ901954|pid:none) Aureobasidium pullulans putative d... 295 5e-79
S52746(S52746;S52745) stearoyl-CoA 9-desaturase (EC 1.14.19.1) [... 295 6e-79
AM920435_140(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 294 1e-78
Y18554_1(Y18554|pid:none) Mortierella alpina ole2 gene for stear... 293 3e-78
(Q12618) RecName: Full=Acyl-CoA desaturase; EC=1.14.19.... 293 3e-78
AP007162_283(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 290 2e-77
AP007151_392(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 287 2e-76
protein update 2009. 7.20
PSORT

psg: 0.97 gvh: 0.74 alm: 0.32 top: 0.57 tms: 0.07 mit: 0.24 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 1.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

32.0 %: extracellular, including cell wall
32.0 %: plasma membrane
24.0 %: endoplasmic reticulum
12.0 %: Golgi

>> prediction for VHP359 is exc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHP359Z
3' end seq.
>VHP359Z.Seq
NNNNNNNNNNGGCTTATAGTGCAGTTTTACCAGTTCGTATTATCTTGTTGCTATTTGGTG
CAGGTGCTGTCGAAGGTTCATGTCGTTGGTGGTCAAGAGATCATCGTGCTCATCATCGTT
ATCTCGATACTGATAAAGATCCATATTCAGCTTCATTGGGTTTCTGGCATTCCCATTTCA
TTTGGTTAATGTTCAAACAAGATCCAAAGAAAATCGGTAGAGCAAACATTGACGACCTTA
ACGCCGATCCATGGGTTATGTGGCAACATAAACATTACATTAAAATCGCCACTTTTATGG
GTCTCGTTTTCCCAACATTGGTAGCTGGTTTAGGTTGGGGTGATTGGGCTGGTGGTTATT
TCTACTCTGGTGTACTTCGTCTCGTTACAGTTCAACATTCCACATTCTTGGTCAATTCAT
TGGCTCATTATTTAGGTGACTCTCCATACGATGATGAACATACTCCAAAGGATTCAGTTG
TGACTGCTATATTAACATTTGGTGAAGGTTATCATAACTTCCATCATGAATTCCCAAATG
ACTATAGAAACGCTTATAAATTCTATCAATATGATCCAACTAAATGGTTGAT
Length of 3' end seq. 592
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -