VHP357
Library VH
(Link to library)
Clone ID VHP357
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHP357P
(Link to Original site)
Representative DNA sequence
>VHP357 (VHP357Q) /CSM/VH/VHP3-C/VHP357Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGAXXXXXXXXXXTCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATA
ACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACG
GTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATT
CTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGA
GAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTG
GTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCC
CAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTG
GTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCG
GTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCG
CTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGG
CTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAA
AGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAA
CAATTTAAGTCGCACTTNAGTTTTCAAANATAGAATCAAATCTAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVGNTE---

---SKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFV
GAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTL
LEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADL
RSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*ti*
valxfsxiesnlkk


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklislsvellnpsmsllvtlk---

---SKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFV
GAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTL
LEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADL
RSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*ti*
valxfsxiesnlkk

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*
rslslfp*sy*irqchcw*h*r---

---pkmiqklvltislittngikmmp*tfglsvqkvtvpisssmspkvfni*mklkilsl
vlsngppkkvlfvmkt*evsvsifmmspstlmpstevvvkssqllvvysmlln*lppqls
*nqst**kllpqktllvvftlysivvevlllvknvvsvphyslskliyqy*npsvspliy
vptlpvklshnvssiiglqlvlstkirkplksl*pperekv*pqksqiltnstknskqfk
shxsfqx*nqi*kk

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVGNTE---

---qr*skssc*lsr**prmg*k*chehlvfrsrr*rcqsprqchqrcsife*n*rffrw
cfpmghqrrccl**kherypfqsl*chpph*chpqrwwsnhpncssctlcc*inclpnsl
rtnllsrnycprkrywwyllctqss*rycyw*rtsyrfpiilcqssftsirilrfhr*ft
fphcrssfptmclrslgfnwccqqr*esh*srfshqkekrfsprnprs*qiprktlnnls
rtxvfkxrikskk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP357 (VHP357Q) /CSM/VH/VHP3-C/VHP357Q.Seq.d/ 2591 0.0
VHA878 (VHA878Q) /CSM/VH/VHA8-D/VHA878Q.Seq.d/ 2585 0.0
VHP730 (VHP730Q) /CSM/VH/VHP7-B/VHP730Q.Seq.d/ 1467 0.0
VHK894 (VHK894Q) /CSM/VH/VHK8-D/VHK894Q.Seq.d/ 1467 0.0
VHK162 (VHK162Q) /CSM/VH/VHK1-C/VHK162Q.Seq.d/ 1467 0.0
VHJ786 (VHJ786Q) /CSM/VH/VHJ7-D/VHJ786Q.Seq.d/ 1467 0.0
VHJ695 (VHJ695Q) /CSM/VH/VHJ6-D/VHJ695Q.Seq.d/ 1467 0.0
VHJ691 (VHJ691Q) /CSM/VH/VHJ6-D/VHJ691Q.Seq.d/ 1467 0.0
VHJ323 (VHJ323Q) /CSM/VH/VHJ3-A/VHJ323Q.Seq.d/ 1467 0.0
VHI690 (VHI690Q) /CSM/VH/VHI6-D/VHI690Q.Seq.d/ 1467 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446334) Dictyostelium discoideum cDNA clone:ddv62l07, 3' ... 1467 0.0 1
(BJ446055) Dictyostelium discoideum cDNA clone:ddv61b15, 3' ... 1467 0.0 1
(BJ443434) Dictyostelium discoideum cDNA clone:ddv52l24, 3' ... 1467 0.0 1
(BJ443011) Dictyostelium discoideum cDNA clone:ddv51k15, 3' ... 1467 0.0 1
(BJ442773) Dictyostelium discoideum cDNA clone:ddv50m24, 3' ... 1467 0.0 1
(BJ442764) Dictyostelium discoideum cDNA clone:ddv50l21, 3' ... 1467 0.0 1
(BJ442731) Dictyostelium discoideum cDNA clone:ddv50e24, 3' ... 1467 0.0 1
(BJ442218) Dictyostelium discoideum cDNA clone:ddv49n05, 3' ... 1467 0.0 1
(BJ442075) Dictyostelium discoideum cDNA clone:ddv48c24, 3' ... 1467 0.0 1
(BJ441254) Dictyostelium discoideum cDNA clone:ddv46l06, 3' ... 1467 0.0 1
dna update 2008.12.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB171046_1(AB171046|pid:none) Macaca fascicularis brain cDNA clo... 447 e-124
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 301 3e-80
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 300 8e-80
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 296 9e-79
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 295 2e-78
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 295 2e-78
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 295 2e-78
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 295 3e-78
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 295 3e-78
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w... 295 3e-78
protein update 2009. 7.20
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHP357 is cyt

5' end seq. ID VHP357F
5' end seq.
>VHP357F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGANNNNNNNNNN
Length of 5' end seq. 617
3' end seq. ID VHP357Z
3' end seq.
>VHP357Z.Seq
NNNNNNNNNNTCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATAACCACGA
ATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAA
TCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGT
TGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTAT
CCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCA
AATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCT
CTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTA
CTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCC
ATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTT
ACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAAT
TGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAA
AGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTA
AGTCGCACTTNAGTTTTCAAANATAGAATCAAATCTAAAAAAAA
Length of 3' end seq. 764
Connected seq. ID VHP357P
Connected seq.
>VHP357P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGA----------TCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATA
ACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACG
GTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATT
CTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGA
GAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTG
GTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCC
CAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTG
GTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCG
GTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCG
CTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGG
CTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAA
AGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAA
CAATTTAAGTCGCACTTNAGTTTTCAAANATAGAATCAAATCTAAAAAAAA
Length of connected seq. 1361
Full length Seq ID -
Full length Seq. -
Length of full length seq. -