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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP355
Library VH
(Link to library)
Clone ID VHP355
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16579-1
Original site URL
Representative seq. ID VHP355P
(Link to Original site)
Representative DNA sequence 
>VHP355 (VHP355Q) /CSM/VH/VHP3-C/VHP355Q.Seq.d/
AAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAA
CTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATAC
CACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCT
AAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGC
AGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGG
CGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATC
TTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTT
CCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCT
AATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTAT
AGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCG
ATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTTATCTTTTCTTGTTXXXXXXX
XXXTNGTAGACGACTATCAAATGAANTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTA
CGAGGGGTTGAGGCTTTTCCATTAGTTCTTATTTTGATAGTGATAGAGCCACCAACAAAC
ACATAATGAAAGTAATTAACTCCTCACGTAAAGTCCAAATCCCAGAAAATGTCACCGTTG
ATGTTAAGGGTCGTTCAGTTAAGGTAACTGGTCCACGTGGTACCTTATCAAAATCATTCG
ATCATGCTTCAGTCGATATCAACTTAGTTGGTAAAAAAGAATTAACTGTTGACTTATGGT
TCGGTAACAGAAAACAAATTGCCTGTATCAAAACCATCACCTCTATCATTGAAAATATGA
TCACTGGTGTTACCAAAGGTTACGAATACAAGATGAGATTTGTCTATGCACATTTCCCAA
TCAACGTTGCTGTCACTGATGGTGGTCGTGTTGTTGAAATCCGTAATTTCTTTGGTGAAA
AGATCGTTCGTCGTATTGAATTATTAGATGGTATCACCTGTTACCGTAACGAAAAAGCTA
AGGATGAAATTGTTTTAACTGGTAACTCATTAGAACTCCTCTCTCAATCATGTGCTACTA
TCCAATTAAGATCTGCCATTAAATACAAGGATGTTAGAAAGTTCTTAGATGGTATCTACG
TCTCGAAAGAAACGTCCTCGAATCCAACTAAATAAATTAAAGGNATATATAGTTTTNCTC
TTAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
iahvq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*
gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsadl
dgsskyskeftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl*
aereag*NSCTIEWDIRVTDRNPGHQLAVEEELSFLV---

---XRRLSNEXGAVSFRVAFSYEGLRLFH*flf****shqqthnesn*llt*spnprkch
r*c*gsfs*gnwstwylikiirscfsryqlsw*krinc*lmvr*qktnclyqnhhlyh*k
ydhwcyqrlriqdeiclctfpnqrcch*wwscc*np*flw*kdrssy*iirwyhllp*rk
s*g*ncfnw*lirtplsimcyypikich*iqgc*kvlrwylrlernvlesn*in*rxi*f
xs*
Translated Amino Acid sequence (All Frames) 
Frame A:
klhmcnek*ellvghfw*aelamwvepnigirrltftnryhkrc*fiktagrwpwksvsa
kecvtthlpnglalkmddassgwsmpnr*kk**yf*rvgrregnvea*m*irvelslvqi
lmvvaniqknll*rpkwgrvp*qwnslmgesilrfgltlsnkvtrsldrk*rwl*h**ly
rpkgkrvkipapsngilg*pivirdinwrsrksylfl---

---x*ttik*xrccklpssvqlrgveafplvliliviepptnt**k*ltphvksksqkms
plmlrvvqlr*lvhvvpyqnhsimlqsist*lvkkn*lltygsvtenklpvskpsplslk
i*slvlpkvtntr*dlsmhisqstllslmvvvllksvislvkrsfvvlny*mvspvtvtk
klrmklf*lvth*nsslnhvllsn*dlplntrmless*mvstsrkkrpriqlnklkxyiv
xllk

Frame B:
nctcamknrss*waifgkqnwrcglnqilg*dv*hslidttkgvsslrqqdgghgsrypl
rsv*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefewscl*crs
*w**qifkriyfegrsgegfhnngihlwvsrs*glg*lslirllghwieseggfntsdfi
grkgsglkflhhrmgy*gnrs*sgtsiggrgrvifsc---

---XRRLSNEXGAVSFRVAFSYEGLRLFH*flf****shqqthnesn*llt*spnprkch
r*c*gsfs*gnwstwylikiirscfsryqlsw*krinc*lmvr*qktnclyqnhhlyh*k
ydhwcyqrlriqdeiclctfpnqrcch*wwscc*np*flw*kdrssy*iirwyhllp*rk
s*g*ncfnw*lirtplsimcyypikich*iqgc*kvlrwylrlernvlesn*in*rxi*f
xs*

Frame C:
iahvq*kigalsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*
gvcnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsadl
dgsskyskeftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl*
aereag*NSCTIEWDIRVTDRNPGHQLAVEEELSFLV---

---vddyqmx*vl*ase*rsvtrg*gfsissyfdsdratnkhimkvinssrkvqipenvt
vdvkgrsvkvtgprgtlsksfdhasvdinlvgkkeltvdlwfgnrkqiaciktitsiien
mitgvtkgyeykmrfvyahfpinvavtdggrvveirnffgekivrrielldgitcyrnek
akdeivltgnslellsqscatiqlrsaikykdvrkfldgiyvsketssnptk*ikgiysf
xlk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP355 (VHP355Q) /CSM/VH/VHP3-C/VHP355Q.Seq.d/                       2664   0.0
VHG394 (VHG394Q) /CSM/VH/VHG3-D/VHG394Q.Seq.d/                       1294   0.0
SHE483 (SHE483Q) /CSM/SH/SHE4-D/SHE483Q.Seq.d/                       1294   0.0
VHM465 (VHM465Q) /CSM/VH/VHM4-C/VHM465Q.Seq.d/                       1281   0.0
VHL615 (VHL615Q) /CSM/VH/VHL6-A/VHL615Q.Seq.d/                       1277   0.0
CHQ795 (CHQ795Q) /CSM/CH/CHQ7-D/CHQ795Q.Seq.d/                       1275   0.0
VHN205 (VHN205Q) /CSM/VH/VHN2-A/VHN205Q.Seq.d/                       1273   0.0
CHP713 (CHP713Q) /CSM/CH/CHP7-A/CHP713Q.Seq.d/                       1267   0.0
VHI207 (VHI207Q) /CSM/VH/VHI2-A/VHI207Q.Seq.d/                       1261   0.0
VHO493 (VHO493Q) /CSM/VH/VHO4-D/VHO493Q.Seq.d/                       1255   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446108) Dictyostelium discoideum cDNA clone:ddv61n13, 3' ...  1411   0.0    1
(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1294   0.0    1
(BJ427212) Dictyostelium discoideum cDNA clone:ddv61n13, 5' ...  1294   0.0    1
(BJ421809) Dictyostelium discoideum cDNA clone:ddv43l23, 5' ...  1294   0.0    1
(BJ393837) Dictyostelium discoideum cDNA clone:dds32f22, 5' ...  1294   0.0    1
(BJ425368) Dictyostelium discoideum cDNA clone:ddv55b18, 5' ...  1281   0.0    1
(X00601) Dictyostelium discoideum ribosomal RNA gene.            1279   0.0    1
(BJ424961) Dictyostelium discoideum cDNA clone:ddv54m04, 5' ...  1277   0.0    1
(BJ370917) Dictyostelium discoideum cDNA clone:ddc55n23, 5' ...  1275   0.0    1
(BJ370161) Dictyostelium discoideum cDNA clone:ddc53j03, 5' ...  1267   0.0    1
dna update 2008.12.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC119415_28(AC119415|pid:none) Medicago truncatula clone mth2-27...   213   1e-53
DQ214104_1(DQ214104|pid:none) Taeniopygia guttata clone 0061P000...   212   2e-53
DQ214105_1(DQ214105|pid:none) Taeniopygia guttata clone 0058P005...   212   2e-53
(P32969) RecName: Full=60S ribosomal protein L9;  &AB062431_1(AB...   211   7e-53
AY892436_1(AY892436|pid:none) Synthetic construct Homo sapiens c...   211   7e-53
(P51410) RecName: Full=60S ribosomal protein L9;  &AF260271_1(AF...   211   7e-53
(P17077) RecName: Full=60S ribosomal protein L9;  &BC086561_1(BC...   211   7e-53
BT070958_1(BT070958|pid:none) Picea sitchensis clone WS02761_O04...   211   7e-53
(P30707) RecName: Full=60S ribosomal protein L9; AltName: Full=G...   211   7e-53
(P49209) RecName: Full=60S ribosomal protein L9-1;  &AC021045_2(...   210   1e-52
protein update 2009. 7.20
PSORT 

 psg: 0.75  gvh: 0.46  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHP355 is cyt
5' end seq. ID VHP355F
5' end seq. 
>VHP355F.Seq
AAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAA
CTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATAC
CACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCT
AAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGC
AGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGG
CGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATC
TTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTT
CCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCT
AATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTAT
AGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCG
ATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTTATCTTTTCTTGTTNNNNNNN
NNN
Length of 5' end seq. 663
3' end seq. ID VHP355Z
3' end seq. 
>VHP355Z.Seq
NNNNNNNNNNTNGTAGACGACTATCAAATGAANTAGGTGCTGTAAGCTTCCGAGTAGCGT
TCAGTTACGAGGGGTTGAGGCTTTTCCATTAGTTCTTATTTTGATAGTGATAGAGCCACC
AACAAACACATAATGAAAGTAATTAACTCCTCACGTAAAGTCCAAATCCCAGAAAATGTC
ACCGTTGATGTTAAGGGTCGTTCAGTTAAGGTAACTGGTCCACGTGGTACCTTATCAAAA
TCATTCGATCATGCTTCAGTCGATATCAACTTAGTTGGTAAAAAAGAATTAACTGTTGAC
TTATGGTTCGGTAACAGAAAACAAATTGCCTGTATCAAAACCATCACCTCTATCATTGAA
AATATGATCACTGGTGTTACCAAAGGTTACGAATACAAGATGAGATTTGTCTATGCACAT
TTCCCAATCAACGTTGCTGTCACTGATGGTGGTCGTGTTGTTGAAATCCGTAATTTCTTT
GGTGAAAAGATCGTTCGTCGTATTGAATTATTAGATGGTATCACCTGTTACCGTAACGAA
AAAGCTAAGGATGAAATTGTTTTAACTGGTAACTCATTAGAACTCCTCTCTCAATCATGT
GCTACTATCCAATTAAGATCTGCCATTAAATACAAGGATGTTAGAAAGTTCTTAGATGGT
ATCTACGTCTCGAAAGAAACGTCCTCGAATCCAACTAAATAAATTAAAGGNATATATAGT
TTTNCTCTTAAAA
Length of 3' end seq. 733
Connected seq. ID VHP355P
Connected seq. 
>VHP355P.Seq
AAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAA
CTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATAC
CACAAAAGGTGTTAGTTCATTAAGACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCT
AAGGAGTGTGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGC
AGTGGATGGTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGG
CGTGAAGGTAACGTAGAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATC
TTGATGGTAGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTT
CCATAACAATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCT
AATAAGGTTACTAGGTCATTGGATCGAAAGTGAAGGTGGCTTTAACACTAGTGACTTTAT
AGGCCGAAAGGGAAGCGGGTTAAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCG
ATCGTAATCCGGGACATCAATTGGCGGTCGAGGAAGAGTTATCTTTTCTTGTT-------
---TNGTAGACGACTATCAAATGAANTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTA
CGAGGGGTTGAGGCTTTTCCATTAGTTCTTATTTTGATAGTGATAGAGCCACCAACAAAC
ACATAATGAAAGTAATTAACTCCTCACGTAAAGTCCAAATCCCAGAAAATGTCACCGTTG
ATGTTAAGGGTCGTTCAGTTAAGGTAACTGGTCCACGTGGTACCTTATCAAAATCATTCG
ATCATGCTTCAGTCGATATCAACTTAGTTGGTAAAAAAGAATTAACTGTTGACTTATGGT
TCGGTAACAGAAAACAAATTGCCTGTATCAAAACCATCACCTCTATCATTGAAAATATGA
TCACTGGTGTTACCAAAGGTTACGAATACAAGATGAGATTTGTCTATGCACATTTCCCAA
TCAACGTTGCTGTCACTGATGGTGGTCGTGTTGTTGAAATCCGTAATTTCTTTGGTGAAA
AGATCGTTCGTCGTATTGAATTATTAGATGGTATCACCTGTTACCGTAACGAAAAAGCTA
AGGATGAAATTGTTTTAACTGGTAACTCATTAGAACTCCTCTCTCAATCATGTGCTACTA
TCCAATTAAGATCTGCCATTAAATACAAGGATGTTAGAAAGTTCTTAGATGGTATCTACG
TCTCGAAAGAAACGTCCTCGAATCCAACTAAATAAATTAAAGGNATATATAGTTTTNCTC
TTAAAA
Length of connected seq. 1376
Full length Seq ID -
Full length Seq. -
Length of full length seq. -