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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP349
Library VH
(Link to library)
Clone ID VHP349
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16430-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHP349 (VHP349Q) /CSM/VH/VHP3-C/VHP349Q.Seq.d/
XXXXXXXXXXCCATGTGTTTTAGTTACCTCTGAATATGGTTGGTCAGCAAACATGGAACG
TATCATGAAAGCTCAAGCTCTCCGTGACTCTTCAATGTCATCATACATGTCATCAAAGAA
AACTTTAGAATTAAATCCAGATCACCCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCGA
AAAAAGTAANACCTTCAAAGACTTTGTTNACTTATTATA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---CVLVTSEYGWSANMERIMKAQALRDSSMSSYMSSKKTLELNPDHPIVRDLAKKAAEK
SXTFKDFVXLL
Translated Amino Acid sequence (All Frames) 
Frame A:
---hvf*lplnmvgqqtwnvs*klklsvtlqchhtchqrkl*n*iqitqslei*pkkppk
kvxpsktlxtyy


Frame B:
---mcfsyl*iwlvskhgtyhessssp*lfnviihvikenfriksrspnr*rfsqksrrk
k*xlqrlcxlii


Frame C:
---CVLVTSEYGWSANMERIMKAQALRDSSMSSYMSSKKTLELNPDHPIVRDLAKKAAEK
SXTFKDFVXLL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP349 (VHP349Q) /CSM/VH/VHP3-C/VHP349Q.Seq.d/                        402   e-112
VSK288 (VSK288Q) /CSM/VS/VSK2-D/VSK288Q.Seq.d/                        394   e-109
VSA716 (VSA716Q) /CSM/VS/VSA7-A/VSA716Q.Seq.d/                        394   e-109
VHQ442 (VHQ442Q) /CSM/VH/VHQ4-B/VHQ442Q.Seq.d/                        394   e-109
VHQ333 (VHQ333Q) /CSM/VH/VHQ3-B/VHQ333Q.Seq.d/                        394   e-109
VHP779 (VHP779Q) /CSM/VH/VHP7-D/VHP779Q.Seq.d/                        394   e-109
VHP475 (VHP475Q) /CSM/VH/VHP4-D/VHP475Q.Seq.d/                        394   e-109
VHP202 (VHP202Q) /CSM/VH/VHP2-A/VHP202Q.Seq.d/                        394   e-109
VHP152 (VHP152Q) /CSM/VH/VHP1-C/VHP152Q.Seq.d/                        394   e-109
VHP148 (VHP148Q) /CSM/VH/VHP1-B/VHP148Q.Seq.d/                        394   e-109
own update 2003. 1. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L43591|L43591.1 Dictyostelium discoideum (clone C 6.1.1) heat shock cognate protein (hsc90) mRNA, complete cds.   394   e-106  1
AL110635|AL110635.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90   1e-14  1
AL114542|AL114542.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90   1e-14  1
AL112228|AL112228.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90   1e-14  1
AL111406|AL111406.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90   1e-14  1
AL113572|AL113572.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90   1e-14  1
AL116357|AL116357.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90   1e-14  1
AL113025|AL113025.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90   1e-14  1
AL115365|AL115365.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90   1e-14  1
AL114332|AL114332.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    90   1e-14  1
dna update 2003.10.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54651) RecName: Full=Heat shock cognate 90 kDa protein;             115   6e-25
L43591_1(L43591|pid:none) Dictyostelium discoideum (clone C 6.1....   115   6e-25
AB300196_1(AB300196|pid:none) Physarum polycephalum hsp90 mRNA f...    87   2e-16
AY288511_1(AY288511|pid:none) Euglena gracilis heat shock protei...    86   3e-16
AB092411_1(AB092411|pid:none) Entamoeba histolytica gene for cyt...    86   4e-16
EU080001_1(EU080001|pid:none) Phytophthora macrochlamydospora is...    86   5e-16
EU080547_1(EU080547|pid:none) Phytophthora sp. P6875 heat shock ...    86   5e-16
EU080253_1(EU080253|pid:none) Phytophthora polonica isolate PD_0...    86   5e-16
EU080884_1(EU080884|pid:none) Phytophthora sp. PDA576 heat shock...    86   5e-16
EU079579_1(EU079579|pid:none) Phytophthora sp. P10457 heat shock...    86   5e-16
protein update 2009. 7.20
PSORT 

 psg: 0.75  gvh: 0.32  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VHP349 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHP349Z
3' end seq. 
>VHP349Z.Seq
NNNNNNNNNNCCATGTGTTTTAGTTACCTCTGAATATGGTTGGTCAGCAAACATGGAACG
TATCATGAAAGCTCAAGCTCTCCGTGACTCTTCAATGTCATCATACATGTCATCAAAGAA
AACTTTAGAATTAAATCCAGATCACCCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCGA
AAAAAGTAANACCTTCAAAGACTTTGTTNACTTATTATA
Length of 3' end seq. 219
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -