VHP335 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHP335
Library	VH (Link to library)
Clone ID	VHP335 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16260-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHP3-B/VHP335Q.Seq.d/
Representative seq. ID	VHP335P (Link to Original site)
Representative DNA sequence	>VHP335 (VHP335Q) /CSM/VH/VHP3-B/VHP335Q.Seq.d/ GAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGTGCCAT TATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCACGGTAA AACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTTTCTGG TGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATTAAATC TTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGTTGTAC TTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGTTCAGA AGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTCGAAGG TGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAACCAGT CTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAAGAAGC TTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACACTGAAGX XXXXXXXXXATCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATANCCACGA ATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAA TCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGT TGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTAT CCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCA AATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCT CTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTA CTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCC ATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTT ACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAAT TGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAA AGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTA AGTCGCACTTNAGTTTTCAAACATAGTAATCAAATCTAAAAAAAA
sequence update	2002.10.25
Translated Amino Acid sequence	SAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKVSG DMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFSSE VTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTEEA YLSFRRAIESVNVIVGNTE--- ---SKDDPKARANYLADXHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFV GAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTL LEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADL RSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLti valxfsnivikskk
Translated Amino Acid sequence (All Frames)	Frame A: eckkskvqngfhnrsnschygpskyqkyvcycscrsrnhfirffnpkswyycrsfw yeiyvmsctrawyhhificitslrnakgrqitswlyftrifnqsyrfprsrfqfr snccppcywcfsryrlrrrclrtnrncitssrrtyqtslirqqsrsflirtpikhrs lslfpsyirqchcwh--- ---iqrskssclsrxprmgkchehlvfrsrrrcqsprqchqrcsifenrffr wcfpmghqrrccl*kherypfqslchpphchpqrwwsnhpncssctlccinclpns lrtnllsrnycprkrywwyllctqssrycywrtsyrfpiilcqssftsirilrfhrf tfphcrssfptmclrslgfnwccqqreshsrfshqkekrfsprnprsqiprktlnnl srtxvfkhsnqikk Frame B: SAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKVSG DMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFSSE VTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTEEA YLSFRRAIESVNVIVGNTE--- ---SKDDPKARANYLADXHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFV GAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTL LEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADL RSHTAGQAFPQCVFDHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKLti* valxfsnivikskk Frame C: vqkkstkwlisqsikfvplwtvvkiseicllllmsitvkplyqilskelvllpikflv idichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnfsilsipqvtlisvqk llpsvllmvlslsiaskvfaykpklyyvkpslnvsnqsysstksivsynsntlkkl islsvellnpsmsllvtlk--- ---pkmiqklvltislixtngikmmptfglsvqkvtvpisssmspkvfnimklkilsl vlsngppkkvlfvmktevsvsifmmspstlmpstevvvkssqllvvysmllnlppqls nqstkllpqktllvvftlysivvevlllvknvvsvphyslskliyqynpsvspliy vptlpvklshnvssiiglqlvlstkirkplkslpperekvpqksqiltnstknskqfk shxsfqt**snlkk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHP335 (VHP335Q) /CSM/VH/VHP3-B/VHP335Q.Seq.d/ 2593 0.0 VHP321 (VHP321Q) /CSM/VH/VHP3-A/VHP321Q.Seq.d/ 1465 0.0 VHK367 (VHK367Q) /CSM/VH/VHK3-C/VHK367Q.Seq.d/ 1465 0.0 VHJ692 (VHJ692Q) /CSM/VH/VHJ6-D/VHJ692Q.Seq.d/ 1465 0.0 VHI808 (VHI808Q) /CSM/VH/VHI8-A/VHI808Q.Seq.d/ 1465 0.0 VHH680 (VHH680Q) /CSM/VH/VHH6-D/VHH680Q.Seq.d/ 1465 0.0 VHE457 (VHE457Q) /CSM/VH/VHE4-C/VHE457Q.Seq.d/ 1465 0.0 VHD209 (VHD209Q) /CSM/VH/VHD2-A/VHD209Q.Seq.d/ 1465 0.0 VHD127 (VHD127Q) /CSM/VH/VHD1-B/VHD127Q.Seq.d/ 1465 0.0 VHC525 (VHC525Q) /CSM/VH/VHC5-B/VHC525Q.Seq.d/ 1465 0.0
own update	2009. 4. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ445993) Dictyostelium discoideum cDNA clone:ddv61f09, 3' ... 1471 0.0 1 (BJ446805) Dictyostelium discoideum cDNA clone:ddv63k21, 3' ... 1465 0.0 1 (BJ446787) Dictyostelium discoideum cDNA clone:ddv63h20, 3' ... 1465 0.0 1 (BJ446779) Dictyostelium discoideum cDNA clone:ddv63f24, 3' ... 1465 0.0 1 (BJ446612) Dictyostelium discoideum cDNA clone:ddv63d10, 3' ... 1465 0.0 1 (BJ446590) Dictyostelium discoideum cDNA clone:ddv63o02, 3' ... 1465 0.0 1 (BJ446553) Dictyostelium discoideum cDNA clone:ddv63g04, 3' ... 1465 0.0 1 (BJ446539) Dictyostelium discoideum cDNA clone:ddv63d04, 3' ... 1465 0.0 1 (BJ446398) Dictyostelium discoideum cDNA clone:ddv62h16, 3' ... 1465 0.0 1 (BJ446386) Dictyostelium discoideum cDNA clone:ddv62f16, 3' ... 1465 0.0 1
dna update	2008.12.16
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AB171046_1(AB171046\|pid:none) Macaca fascicularis brain cDNA clo... 447 e-124 AY391422_1(AY391422\|pid:none) Danio rerio eukaryotic translation... 301 4e-80 AY069933_1(AY069933\|pid:none) Rana sylvatica eukaryotic translat... 300 1e-79 BC089730_1(BC089730\|pid:none) Xenopus tropicalis MGC108369 prote... 296 1e-78 BT045031_1(BT045031\|pid:none) Salmo salar clone ssal-rgf-510-120... 295 3e-78 BT071866_1(BT071866\|pid:none) Salmo salar clone ssal-rgf-501-088... 295 3e-78 BT059038_1(BT059038\|pid:none) Salmo salar clone ssal-rgf-521-328... 295 3e-78 BC060707_1(BC060707\|pid:none) Mus musculus eukaryotic translatio... 295 3e-78 AK161993_1(AK161993\|pid:none) Mus musculus 12 days embryo male w... 295 3e-78 AK032997_1(AK032997\|pid:none) Mus musculus 12 days embryo male w... 295 3e-78
protein update	2009. 7.20
PSORT	psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00 nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: cytoplasmic 36.0 %: nuclear 4.0 %: extracellular, including cell wall 4.0 %: cytoskeletal 4.0 %: vacuolar >> prediction for VHP335 is cyt
5' end seq. ID	VHP335F
5' end seq.	>VHP335F.Seq GAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGTGCCAT TATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCACGGTAA AACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTTTCTGG TGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATTAAATC TTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGTTGTAC TTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGTTCAGA AGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTCGAAGG TGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAACCAGT CTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAAGAAGC TTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACACTGAAGN NNNNNNNNN
Length of 5' end seq.	609
3' end seq. ID	VHP335Z
3' end seq.	>VHP335Z.Seq NNNNNNNNNNATCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATANCCACG AATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCA ATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCG TTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTA TCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTC AAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTC TCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTT ACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCC CATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATT TACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAA TTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAA AAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTT AAGTCGCACTTNAGTTTTCAAACATAGTAATCAAATCTAAAAAAAA
Length of 3' end seq.	766
Connected seq. ID	VHP335P
Connected seq.	>VHP335P.Seq GAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGTGCCAT TATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCACGGTAA AACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTTTCTGG TGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCATTAAATC TTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGGTTGTAC TTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAGTTCAGA AGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGTCGAAGG TGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAAACCAGT CTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTGAAGAAGC TTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACACTGAAG- ---------ATCCAAAGATGATCCAAAAGCTCGTGCTAACTATCTCGCTGATANCCACGA ATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAA TCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGT TGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTAT CCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCA AATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCT CTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTA CTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCC ATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTT ACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAAT TGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAA AGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTA AGTCGCACTTNAGTTTTCAAACATAGTAATCAAATCTAAAAAAAA
Length of connected seq.	1355
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas