VHP310
Library VH
(Link to library)
Clone ID VHP310
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15977-1|Contig-U16210-1
Original site URL
Representative seq. ID VHP310P
(Link to Original site)
Representative DNA sequence
>VHP310 (VHP310Q) /CSM/VH/VHP3-A/VHP310Q.Seq.d/
ACCAATAGTTGTAATTTATTGTACAATATAAAAAATATAGAAAAAAATGAAATTAATTAT
ATTAATTGTATTAAGCATTTTAATATCAATTGTAATTTCAGGATCAGTACAAAGTAAAAT
TACTACAACACGTGGTATTAGTAATGTATACAGTAAAAATGATATAAATAATATAAAACA
ATTCATTTCAAGCAAATACAATGGTAATACCAAATTATATGGTGAATCATTAAAGGATAC
ATTTTATGGAGTTGGAGTTTTAACACGTATTGGTGAAACAAATATTGAAGCAACAAAAGA
CATTTGTAAACAAACCAAAGAACAATTAAAACAAAATAAATTTACAGATATTGAATTAGT
TTTCAATGGAGTTACTATCCTTTCAGAATTAAAATGTTTACAAGGTGAATCATCATCATC
ATTGGGAAATGAACAACAATTACAAGATTTATTAAAAAATAAATTAGAGAATGGTTCATT
ATTGGAAAAGACACAAGCTATTAATATTTATTTCACACTTTCAAGTGCAAAAGCAATCGA
TTCAAAAACCGTTTCAATAATTGATCCATTATTGATACAAGCTGTXXXXXXXXXXATTAT
CATATGCACCAAAATCCGATCAATTAGGTTCTCCAAAGACTACCAATGAAGTTCAATTTG
GTCAAAAATTACCATTAATTGAAATCCCATCAAATAATATCGCTCGTATCTTCTTTAGAA
TCGCATCTGAAGCTCAACCATATCAAGCTCAACAAGTTGGTATTCGTTTCTATTCACCAG
CTAGAGAAGCCGTAGTTCCAGCAACTTACTCTGCTGATGCCTACTCTTACACCTTCACCA
ATAAAGATGCTTGCAAGATTTTAGGTTGTCAATCTGGAAATTATCAATTGGATTTAATCA
TTGGTGATCAATCAATCACTCCATTACAATGGAATTTCGGTGAAATTAATTTGAAATTCA
ATCAATCAACCATTCCAACCAATCGTTATCCAGAACAACTCCCAATCTCTCACAACTTTA
GAGTAGCTGAAAAGAGACCACCACAATCTATCTCAAGTTTATTCACTCTCTTGGTCTTAT
CACCAATCGCCATCTTTGTCATTGGTCTCTTATTCGTTGGTACCAATCTTGGTAGATTCC
CAACTGGTATGGGTTTCATTTACACCATTGGTTTCCTTGGTTGTATCTCTGCAACTGGTC
TCTTAATTGTAAACTATTGGTTACACTCCACAATGGATGTTACCCTCAAAAATTTAGCTT
TATTAATGATTCCATTAGTTTTCTTNGGTCATAAATCAATGAGTTATTATTCAAATCTTT
CTTCTTCAAATATTAAAAAAGNATTAAAAATAAAAAATAAA
sequence update 2002.10.25
Translated Amino Acid sequence
pivviycti*ki*KKMKLIILIVLSILISIVISGSVQSKITTTRGISNVYSKNDINNIKQ
FISSKYNGNTKLYGESLKDTFYGVGVLTRIGETNIEATKDICKQTKEQLKQNKFTDIELV
FNGVTILSELKCLQGESSSSLGNEQQLQDLLKNKLENGSLLEKTQAINIYFTLSSAKAID
SKTVSIIDPLLIQA---

---LSYAPKSDQLGSPKTTNEVQFGQKLPLIEIPSNNIARIFFRIASEAQPYQAQQVGIR
FYSPAREAVVPATYSADAYSYTFTNKDACKILGCQSGNYQLDLIIGDQSITPLQWNFGEI
NLKFNQSTIPTNRYPEQLPISHNFRVAEKRPPQSISSLFTLLVLSPIAIFVIGLLFVGTN
LGRFPTGMGFIYTIGFLGCISATGLLIVNYWLHSTMDVTLKNLALLMIPLVFXGHKSMSY
YSNLSSSNIKKXLKIKNK


Translated Amino Acid sequence (All Frames)
Frame A:
tnscnllynikniekneinyincikhfnincnfristk*nyyntwy**ciq*k*yk*ykt
ihfkqiqw*yqiiw*iikgyilwswsfntyw*nky*snkrhl*tnqrtiktk*iyry*is
fqwsyypfrikmftr*iiiiigk*ttitrfikk*irewfiigkdtsy*ylfhtfkcksnr
fknrfnn*siidtsc---

---iiictkirsirfskdyq*ssiwskitin*npik*yrsyll*nri*sstissstswys
flfts*rsrsssnllc*clllhlhq*rclqdfrlsiwklsigfnhw*sinhsitmefr*n
*feiqsinhsnqslsrttpnlsql*ss*ketttiylkfihslglitnrhlchwslirwyq
sw*ipnwygfhlhhwfpwlylcnwslnckllvtlhngcypqkfsfindsisflxs*inel
lfksfffky*kxiknkk*

Frame B:
pivviycti*ki*KKMKLIILIVLSILISIVISGSVQSKITTTRGISNVYSKNDINNIKQ
FISSKYNGNTKLYGESLKDTFYGVGVLTRIGETNIEATKDICKQTKEQLKQNKFTDIELV
FNGVTILSELKCLQGESSSSLGNEQQLQDLLKNKLENGSLLEKTQAINIYFTLSSAKAID
SKTVSIIDPLLIQA---

---LSYAPKSDQLGSPKTTNEVQFGQKLPLIEIPSNNIARIFFRIASEAQPYQAQQVGIR
FYSPAREAVVPATYSADAYSYTFTNKDACKILGCQSGNYQLDLIIGDQSITPLQWNFGEI
NLKFNQSTIPTNRYPEQLPISHNFRVAEKRPPQSISSLFTLLVLSPIAIFVIGLLFVGTN
LGRFPTGMGFIYTIGFLGCISATGLLIVNYWLHSTMDVTLKNLALLMIPLVFXGHKSMSY
YSNLSSSNIKKXLKIKNK

Frame C:
q*l*fivqykkyrkk*n*ly*ly*af*yql*fqdqykvkllqhvvlvmytvkmi*ii*nn
sfqantmvipnymvnh*rihfmelef*hvlvkqilkqqktfvnkpknn*nkinlqiln*f
smellsfqn*nvykvnhhhhwemnnnykiy*kin*rmvhywkrhkllifishfqvqkqsi
qkpfq*lihy*ykl---

---yhmhqnpin*vlqrlpmkfnlvknyh*lkshqiislvssleshlklnhiklnklvfv
sihqlekp*fqqltllmptltpspikmlarf*vvnleiinwi*slvinqslhyngisvkl
i*nsinqpfqpiviqnnsqslttle*lkrdhhnlsqvyslswsyhqspslslvsyslvpi
lvdsqlvwvsftplvslvvslqlvs*l*tigytpqwmlpski*ly**fh*fsxvinq*vi
iqifllqilkkx*k*ki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP310 (VHP310Q) /CSM/VH/VHP3-A/VHP310Q.Seq.d/ 2524 0.0
VHQ120 (VHQ120Q) /CSM/VH/VHQ1-A/VHQ120Q.Seq.d/ 1445 0.0
VHO870 (VHO870Q) /CSM/VH/VHO8-C/VHO870Q.Seq.d/ 1437 0.0
VHC534 (VHC534Q) /CSM/VH/VHC5-B/VHC534Q.Seq.d/ 1437 0.0
VHD225 (VHD225Q) /CSM/VH/VHD2-B/VHD225Q.Seq.d/ 1429 0.0
VHC739 (VHC739Q) /CSM/VH/VHC7-B/VHC739Q.Seq.d/ 1429 0.0
VHE188 (VHE188Q) /CSM/VH/VHE1-D/VHE188Q.Seq.d/ 1421 0.0
VFJ757 (VFJ757Q) /CSM/VF/VFJ7-C/VFJ757Q.Seq.d/ 1322 0.0
VHM302 (VHM302Q) /CSM/VH/VHM3-A/VHM302Q.Seq.d/ 1306 0.0
AFN258 (AFN258Q) /CSM/AF/AFN2-C/AFN258Q.Seq.d/ 1302 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446554) Dictyostelium discoideum cDNA clone:ddv63g05, 3' ... 1445 0.0 1
(BJ445911) Dictyostelium discoideum cDNA clone:ddv61d03, 3' ... 1445 0.0 1
(BJ445792) Dictyostelium discoideum cDNA clone:ddv60l18, 3' ... 1437 0.0 1
(BJ438067) Dictyostelium discoideum cDNA clone:ddv36c09, 3' ... 1437 0.0 1
(BJ438540) Dictyostelium discoideum cDNA clone:ddv37a08, 3' ... 1390 0.0 2
(BJ438123) Dictyostelium discoideum cDNA clone:ddv36n09, 3' ... 1390 0.0 2
(BJ347579) Dictyostelium discoideum cDNA clone:dda27c16, 3' ... 1302 0.0 1
(BJ433008) Dictyostelium discoideum cDNA clone:ddv20b15, 3' ... 1300 0.0 3
(BJ444040) Dictyostelium discoideum cDNA clone:ddv55d01, 3' ... 1265 0.0 3
(BJ438426) Dictyostelium discoideum cDNA clone:ddv37k21, 3' ... 1201 0.0 1
dna update 2008.12.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY058845_1(AY058845|pid:none) Arabidopsis thaliana AT4g21150/F7J... 84 9e-15
AK096243_1(AK096243|pid:none) Homo sapiens cDNA FLJ38924 fis, cl... 82 6e-14
(P04844) RecName: Full=Dolichyl-diphosphooligosaccharide--protei... 82 6e-14
DQ895552_1(DQ895552|pid:none) Synthetic construct Homo sapiens c... 82 6e-14
B26168(B26168)ribophorin II precursor - human 82 6e-14
Y00282_1(Y00282|pid:none) Human mRNA for ribophorin II. 82 6e-14
BC002380_1(BC002380|pid:none) Homo sapiens ribophorin II, mRNA (... 82 6e-14
(Q9GL01) RecName: Full=Dolichyl-diphosphooligosaccharide--protei... 81 8e-14
CR860502_1(CR860502|pid:none) Pongo abelii mRNA; cDNA DKFZp468G2... 81 8e-14
AK315801_1(AK315801|pid:none) Homo sapiens cDNA, FLJ96923, highl... 81 1e-13
protein update 2009. 7.20
PSORT

psg: 0.97 gvh: 0.68 alm: 0.15 top: 0.47 tms: 0.20 mit: 0.39 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

40.0 %: endoplasmic reticulum
20.0 %: mitochondrial
16.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: nuclear
4.0 %: vacuolar

>> prediction for VHP310 is end

5' end seq. ID VHP310F
5' end seq.
>VHP310F.Seq
ACCAATAGTTGTAATTTATTGTACAATATAAAAAATATAGAAAAAAATGAAATTAATTAT
ATTAATTGTATTAAGCATTTTAATATCAATTGTAATTTCAGGATCAGTACAAAGTAAAAT
TACTACAACACGTGGTATTAGTAATGTATACAGTAAAAATGATATAAATAATATAAAACA
ATTCATTTCAAGCAAATACAATGGTAATACCAAATTATATGGTGAATCATTAAAGGATAC
ATTTTATGGAGTTGGAGTTTTAACACGTATTGGTGAAACAAATATTGAAGCAACAAAAGA
CATTTGTAAACAAACCAAAGAACAATTAAAACAAAATAAATTTACAGATATTGAATTAGT
TTTCAATGGAGTTACTATCCTTTCAGAATTAAAATGTTTACAAGGTGAATCATCATCATC
ATTGGGAAATGAACAACAATTACAAGATTTATTAAAAAATAAATTAGAGAATGGTTCATT
ATTGGAAAAGACACAAGCTATTAATATTTATTTCACACTTTCAAGTGCAAAAGCAATCGA
TTCAAAAACCGTTTCAATAATTGATCCATTATTGATACAAGCTGTNNNNNNNNNN
Length of 5' end seq. 595
3' end seq. ID VHP310Z
3' end seq.
>VHP310Z.Seq
NNNNNNNNNNATTATCATATGCACCAAAATCCGATCAATTAGGTTCTCCAAAGACTACCA
ATGAAGTTCAATTTGGTCAAAAATTACCATTAATTGAAATCCCATCAAATAATATCGCTC
GTATCTTCTTTAGAATCGCATCTGAAGCTCAACCATATCAAGCTCAACAAGTTGGTATTC
GTTTCTATTCACCAGCTAGAGAAGCCGTAGTTCCAGCAACTTACTCTGCTGATGCCTACT
CTTACACCTTCACCAATAAAGATGCTTGCAAGATTTTAGGTTGTCAATCTGGAAATTATC
AATTGGATTTAATCATTGGTGATCAATCAATCACTCCATTACAATGGAATTTCGGTGAAA
TTAATTTGAAATTCAATCAATCAACCATTCCAACCAATCGTTATCCAGAACAACTCCCAA
TCTCTCACAACTTTAGAGTAGCTGAAAAGAGACCACCACAATCTATCTCAAGTTTATTCA
CTCTCTTGGTCTTATCACCAATCGCCATCTTTGTCATTGGTCTCTTATTCGTTGGTACCA
ATCTTGGTAGATTCCCAACTGGTATGGGTTTCATTTACACCATTGGTTTCCTTGGTTGTA
TCTCTGCAACTGGTCTCTTAATTGTAAACTATTGGTTACACTCCACAATGGATGTTACCC
TCAAAAATTTAGCTTTATTAATGATTCCATTAGTTTTCTTNGGTCATAAATCAATGAGTT
ATTATTCAAATCTTTCTTCTTCAAATATTAAAAAAGNATTAAAAATAAAAAATAAA
Length of 3' end seq. 776
Connected seq. ID VHP310P
Connected seq.
>VHP310P.Seq
ACCAATAGTTGTAATTTATTGTACAATATAAAAAATATAGAAAAAAATGAAATTAATTAT
ATTAATTGTATTAAGCATTTTAATATCAATTGTAATTTCAGGATCAGTACAAAGTAAAAT
TACTACAACACGTGGTATTAGTAATGTATACAGTAAAAATGATATAAATAATATAAAACA
ATTCATTTCAAGCAAATACAATGGTAATACCAAATTATATGGTGAATCATTAAAGGATAC
ATTTTATGGAGTTGGAGTTTTAACACGTATTGGTGAAACAAATATTGAAGCAACAAAAGA
CATTTGTAAACAAACCAAAGAACAATTAAAACAAAATAAATTTACAGATATTGAATTAGT
TTTCAATGGAGTTACTATCCTTTCAGAATTAAAATGTTTACAAGGTGAATCATCATCATC
ATTGGGAAATGAACAACAATTACAAGATTTATTAAAAAATAAATTAGAGAATGGTTCATT
ATTGGAAAAGACACAAGCTATTAATATTTATTTCACACTTTCAAGTGCAAAAGCAATCGA
TTCAAAAACCGTTTCAATAATTGATCCATTATTGATACAAGCTGT----------ATTAT
CATATGCACCAAAATCCGATCAATTAGGTTCTCCAAAGACTACCAATGAAGTTCAATTTG
GTCAAAAATTACCATTAATTGAAATCCCATCAAATAATATCGCTCGTATCTTCTTTAGAA
TCGCATCTGAAGCTCAACCATATCAAGCTCAACAAGTTGGTATTCGTTTCTATTCACCAG
CTAGAGAAGCCGTAGTTCCAGCAACTTACTCTGCTGATGCCTACTCTTACACCTTCACCA
ATAAAGATGCTTGCAAGATTTTAGGTTGTCAATCTGGAAATTATCAATTGGATTTAATCA
TTGGTGATCAATCAATCACTCCATTACAATGGAATTTCGGTGAAATTAATTTGAAATTCA
ATCAATCAACCATTCCAACCAATCGTTATCCAGAACAACTCCCAATCTCTCACAACTTTA
GAGTAGCTGAAAAGAGACCACCACAATCTATCTCAAGTTTATTCACTCTCTTGGTCTTAT
CACCAATCGCCATCTTTGTCATTGGTCTCTTATTCGTTGGTACCAATCTTGGTAGATTCC
CAACTGGTATGGGTTTCATTTACACCATTGGTTTCCTTGGTTGTATCTCTGCAACTGGTC
TCTTAATTGTAAACTATTGGTTACACTCCACAATGGATGTTACCCTCAAAAATTTAGCTT
TATTAATGATTCCATTAGTTTTCTTNGGTCATAAATCAATGAGTTATTATTCAAATCTTT
CTTCTTCAAATATTAAAAAAGNATTAAAAATAAAAAATAAA
Length of connected seq. 1351
Full length Seq ID -
Full length Seq. -
Length of full length seq. -