>VHP287 (VHP287Q) /CSM/VH/VHP2-D/VHP287Q.Seq.d/
XXXXXXXXXXCTCTCATTTCCATTCCAGTTATGNTGGTCATTAAACCATTGTTCATGAAG
AGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGAT
GATGAAGCTNTTTACANTGGTCATCACGGTGAAGAATTTGAAATGGGTNAAGTCTTTGTT
CATCAAGTCATTCATACCATCGAGTTTGTTNTGGGNGCTGTNTCAAATNNTGCCTCTCAT
CNTCGTCTATGGGCTCNTTCATTGGCTCNCTCTGAGTNNTNTTCTGTATNTNGGGAACGT
ATTCNCATTGGTCAAGTCNAACGTGGTAATCCATTCTTGGCT

---LISIPVMXVIKPLFMKRFHFQEVERKKLGHHEEEHDDEAXYXGHHGEEFEMGXVFVH
QVIHTIEFVXGAVSNXASHXRLWAXSLAXSEXXSVXXERIXIGQVXRGNPFLA

Frame A:
---shfhssyxgh*tivheeiplprsrkkeirsprrgt***sxlxwssr*ri*ngxslcs
sshsyhrvcxgxcxkxclssssmgsfigsl*vxfcxxgtyshwssxtw*silg


Frame B:
---LISIPVMXVIKPLFMKRFHFQEVERKKLGHHEEEHDDEAXYXGHHGEEFEMGXVFVH
QVIHTIEFVXGAVSNXASHXRLWAXSLAXSEXXSVXXERIXIGQVXRGNPFLA


Frame C:
---sfpfqlxwslnhcs*rdstskkskern*vttkrnmmmklftxvitvknlkwvkslfi
ksfipsslxwxlxqxxplixvyglxhwlxlsxxlyxgnvfxlvksnvvihsw

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP287 (VHP287Q) /CSM/VH/VHP2-D/VHP287Q.Seq.d/                        545   e-154
AHB458 (AHB458Q) /CSM/AH/AHB4-C/AHB458Q.Seq.d/                        529   e-150
CHP641 (CHP641Q) /CSM/CH/CHP6-B/CHP641Q.Seq.d/                        523   e-148
CHP276 (CHP276Q) /CSM/CH/CHP2-D/CHP276Q.Seq.d/                        523   e-148
VHQ150 (VHQ150Q) /CSM/VH/VHQ1-C/VHQ150Q.Seq.d/                        521   e-147
VHP711 (VHP711Q) /CSM/VH/VHP7-A/VHP711Q.Seq.d/                        521   e-147
VHN341 (VHN341Q) /CSM/VH/VHN3-B/VHN341Q.Seq.d/                        521   e-147
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                        521   e-147
VHL159 (VHL159Q) /CSM/VH/VHL1-C/VHL159Q.Seq.d/                        521   e-147
VHK808 (VHK808Q) /CSM/VH/VHK8-A/VHK808Q.Seq.d/                        521   e-147

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.   521   e-144  1
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    46   0.28   1
BU027978|BU027978.1 QHG9C20.yg.ab1 QH_EFGHJ sunflower RHA280 Helianthus annuus cDNA clone QHG9C20, mRNA sequence.    46   0.28   1
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    46   0.28   1
C67631|C67631.1 C.elegans cDNA clone yk307a1 : 5' end, single read.    38   2.1    2
AV191496|AV191496.1 Caenorhabditis elegans cDNA clone:yk594f1 : 5' end, single read.    38   2.2    2
CB405933|CB405933.1 OSTR059G3_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    38   2.9    2
AC006101|AC006101.3 citb_338_f_24, complete sequence.              42   4.4    1
BV061153|BV061153.1 S212P6732FG5.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    42   4.4    1
AZ016467|AZ016467.1 RPCI-23-381M1.TV RPCI-23 Mus musculus genomic clone RPCI-23-381M1, genomic survey sequence.    42   4.4    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   119   4e-26
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   119   4e-26
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...    58   9e-08
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...    57   2e-07
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...    57   3e-07
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...    57   3e-07
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...    57   3e-07
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...    57   3e-07
AY123133_1(AY123133|pid:none) Griffithsia japonica vacuolar prot...    57   3e-07
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...    55   6e-07

 psg: 0.64  gvh: 0.31  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for VHP287 is cyt

>VHP287Z.Seq
NNNNNNNNNNCTCTCATTTCCATTCCAGTTATGNTGGTCATTAAACCATTGTTCATGAAG
AGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGAT
GATGAAGCTNTTTACANTGGTCATCACGGTGAAGAATTTGAAATGGGTNAAGTCTTTGTT
CATCAAGTCATTCATACCATCGAGTTTGTTNTGGGNGCTGTNTCAAATNNTGCCTCTCAT
CNTCGTCTATGGGCTCNTTCATTGGCTCNCTCTGAGTNNTNTTCTGTATNTNGGGAACGT
ATTCNCATTGGTCAAGTCNAACGTGGTAATCCATTCTTGGCT