VHP284 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHP284
Library	VH (Link to library)
Clone ID	VHP284 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U12327-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHP2-D/VHP284Q.Seq.d/
Representative seq. ID	VHP284P (Link to Original site)
Representative DNA sequence	>VHP284 (VHP284Q) /CSM/VH/VHP2-D/VHP284Q.Seq.d/ ATACGATAGTTTAGATAAAGTTTTATCTTTAATGAAAACTTTGAATAAGAGTTATCTTCA AGATTTTTCTTTCATTGCAGAATGGGAATCATTATCATTTGAAAAGAAGAAAGAGAAATT CTCAAAGTTCACTTGCCATGAATTAAACTTTTTCATCTATAAAAAGGATAAGGAATTCTT TGATCAAGTTGTATTACCATTGGTTCAAACTAAAGGTTATAAAACATTCATTGATCATTA TTTATGTGCCGATAGAAAGAAATTGGAAATATTTGTTATCGATTCAAATAGATTCAACAC TTTAAATGCTTTGGAAATGGTTTTATTAGGTGAGCTATTCCCAGAACATTCAGATTCAAT TTCAAAACTTTTGAAACAAAAAGTTGGCTTCTCTCCAATTTCACCATCTCAATATGATAC AAATTTCAAGATCGCTTTAAATCAATTAGATACTGATATTGAAAGTTTAAAGAGTGGTGA TGATGATCTTTATGATGATGGTAGTAATTTANAACCAATGAGTGTTGGAGGTGGTGGGTX XXXXXXXXXCAATCATTTATCATGGGAATACATTGCAAATCAAGGTACATTGGAATCAAT CTTGGAATATTTATCAAAGAACAATTTGTATCGTGTTGATTTCTATCATCTCTATCATAG ATATACCGATAAGAAAGTTTGGGATAAAGTAATTGAACTCTTAAAGAAATTGAAATTCTA TGAATCTATCACTTGGTCATTCTCTATTCATCATAAGAATTTCGTTTACTTGAAAGATTA CCTCTCTGAACAAATTCATTCCTTATCAATGAAATCAATCGATGCACCATCCATTTATGT TGATCCATTTGAAAATAACTTCATCAAATTCTTGGAATACTCTCCATTGGTTAATTCAAG AACTCATCAAATTGGTGATGAAAGAAAGATTCTTAATAATAAATTATCAAATCAATATTA TGAATTCTGTAGTTTACTTTCATTGAAATTAAATCCATCCGATACTGAATTACTTTCTTT AGCTTATTATTTATTACTTCAAGATAGATTTGATGAATCAATTAAAATTATGAAGAGAAT TGGTAAACATCCAGTTTCAATTCCAAAATTAATTTCTTCTTCAACCACTACTGATTCAAA ATCAACTCATTCATCAGTAATTTCTTCTTCTTCCTCTTCAAATTTATCAACCACTACTGA TAGTTCAAAAGATAAAAAGAAACTGAAAAAGAAGAAAAACAAAGAGAAAAAGAAAGAAAA CAAAAAGAAAAAGAAGNATAAAAAGNGNNNAAAAAGAA
sequence update	2002.10.25
Translated Amino Acid sequence	YDSLDKVLSLMKTLNKSYLQDFSFIAEWESLSFEKKKEKFSKFTCHELNFFIYKKDKEFF DQVVLPLVQTKGYKTFIDHYLCADRKKLEIFVIDSNRFNTLNALEMVLLGELFPEHSDSI SKLLKQKVGFSPISPSQYDTNFKIALNQLDTDIESLKSGDDDLYDDGSNLXPMSVGGGG- -- ---NHLSWEYIANQGTLESILEYLSKNNLYRVDFYHLYHRYTDKKVWDKVIELLKKLKFY ESITWSFSIHHKNFVYLKDYLSEQIHSLSMKSIDAPSIYVDPFENNFIKFLEYSPLVNSR THQIGDERKILNNKLSNQYYEFCSLLSLKLNPSDTELLSLAYYLLLQDRFDESIKIMKRI GKHPVSIPKLISSSTTTDSKSTHSSVISSSSSSNLSTTTDSSKDKKKLKKKKNKEKKKEN KKKKKXKKXXKR
Translated Amino Acid sequence (All Frames)	Frame A: irfrsfifnenfeelssrfffhcrmgiiiikeereilkvhlpiklfhlkggil sscitigsnrlnihslfmcrkeignicyrfkiqhfkcfgngfiraiprtfrfn fktfetkswllsnftisiykfqdrfksiryykfkewslw*fxtnecwrww- -- ---qsfimgihcksryiginlgifikeqfvscflsslsiyreslgsntlkeieil iyhlvilyssefrllerlpltnsflineinrctihlcsiklhqilgilsigfk nssnwkkds*iiksililftfieiksiryitffsllfitsriinnyeen wtssfnskinfffnhyfkinsfisnfffflfkfinhy*fkrketekeekqrekerk qkekexkxxkk Frame B: YDSLDKVLSLMKTLNKSYLQDFSFIAEWESLSFEKKKEKFSKFTCHELNFFIYKKDKEFF DQVVLPLVQTKGYKTFIDHYLCADRKKLEIFVIDSNRFNTLNALEMVLLGELFPEHSDSI SKLLKQKVGFSPISPSQYDTNFKIALNQLDTDIESLKSGDDDLYDDGSNLXPMSVGGGG- -- ---NHLSWEYIANQGTLESILEYLSKNNLYRVDFYHLYHRYTDKKVWDKVIELLKKLKFY ESITWSFSIHHKNFVYLKDYLSEQIHSLSMKSIDAPSIYVDPFENNFIKFLEYSPLVNSR THQIGDERKILNNKLSNQYYEFCSLLSLKLNPSDTELLSLAYYLLLQDRFDESIKIMKRI GKHPVSIPKLISSSTTTDSKSTHSSVISSSSSSNLSTTTDSSKDKKKLKKKKNKEKKKEN KKKKKXKKXXKR Frame C: tivikfyl*klirvifkiflslqngnhyhlkrrkrnsqsslamntfssikrirnsl iklyyhwfklkvikhsliiiyvpiernwkyllsiqidstlmlwkwfyvsysqniqiqf qnfnkklaslqfhhlnmiqisrslinililkvrvvmmifmmmvvixnqvlevvg- -- ---iiyhgntlqikvhwnqswniyqrticivlisiisiidipirkfgiklnsrnnsm nlslghslfiirisftkitslnkfipyqnqsmhhpfmlihlkitssnswntlhwliqe liklvmkerfliinyqinimnsvvyfhnihpilnyflliiyyfkidlmnqlklrel vniqfqfqnfllqplliqnqlihqflllplqiyqpllivqkikrnkrrktkrkrkkt krkrxikxxxke
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHP284 (VHP284Q) /CSM/VH/VHP2-D/VHP284Q.Seq.d/ 2325 0.0 VHP670 (VHP670Q) /CSM/VH/VHP6-C/VHP670Q.Seq.d/ 1302 0.0 VHC649 (VHC649Q) /CSM/VH/VHC6-C/VHC649Q.Seq.d/ 1302 0.0 VHC626 (VHC626Q) /CSM/VH/VHC6-B/VHC626Q.Seq.d/ 1302 0.0 VHB392 (VHB392Q) /CSM/VH/VHB3-D/VHB392Q.Seq.d/ 1302 0.0 VHH672 (VHH672Q) /CSM/VH/VHH6-C/VHH672Q.Seq.d/ 1294 0.0 VHA602 (VHA602Q) /CSM/VH/VHA6-A/VHA602Q.Seq.d/ 1294 0.0 VHN485 (VHN485Q) /CSM/VH/VHN4-D/VHN485Q.Seq.d/ 1289 0.0 CHG769 (CHG769Q) /CSM/CH/CHG7-C/CHG769Q.Seq.d/ 1285 0.0 VHI335 (VHI335Q) /CSM/VH/VHI3-B/VHI335Q.Seq.d/ 1279 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446414) Dictyostelium discoideum cDNA clone:ddv62k18, 3' ... 1302 0.0 1 (BJ446155) Dictyostelium discoideum cDNA clone:ddv61g22, 3' ... 1302 0.0 1 (BJ438138) Dictyostelium discoideum cDNA clone:ddv36a14, 3' ... 1302 0.0 1 (BJ438066) Dictyostelium discoideum cDNA clone:ddv36c08, 3' ... 1302 0.0 1 (BJ437305) Dictyostelium discoideum cDNA clone:ddv33h23, 3' ... 1302 0.0 1 (BJ441438) Dictyostelium discoideum cDNA clone:ddv46o18, 3' ... 1294 0.0 1 (BJ436710) Dictyostelium discoideum cDNA clone:ddv32c02, 3' ... 1294 0.0 1 (BJ379675) Dictyostelium discoideum cDNA clone:ddc35j17, 3' ... 1285 0.0 1 (BJ441625) Dictyostelium discoideum cDNA clone:ddv47f09, 3' ... 1277 0.0 1 (BJ444237) Dictyostelium discoideum cDNA clone:ddv55p18, 3' ... 1257 0.0 2
dna update	2008.12.15
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CP000685_1285(CP000685\|pid:none) Flavobacterium johnsoniae UW101... 39 0.41 AM910986_112(AM910986\|pid:none) Plasmodium knowlesi strain H chr... 39 0.54 AL844507_40(AL844507\|pid:none) Plasmodium falciparum 3D7 chromos... 37 1.2 CP000551_1069(CP000551\|pid:none) Prochlorococcus marinus str. AS... 37 2.0 AL844507_89(AL844507\|pid:none) Plasmodium falciparum 3D7 chromos... 36 2.7 CP000111_1067(CP000111\|pid:none) Prochlorococcus marinus str. MI... 36 3.5 CP000409_33(CP000409\|pid:none) Rickettsia canadensis str. McKiel... 35 4.5 CP000608_32(CP000608\|pid:none) Francisella tularensis subsp. tul... 35 5.9 AY740026_3(AY740026\|pid:none) Saccharomyces kudriavzevii IFO 180... 35 5.9 AB025622_8(AB025622\|pid:none) Arabidopsis thaliana genomic DNA, ... 35 7.8
protein update	2009. 7.20
PSORT	psg: 0.75 gvh: 0.41 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00 nuc: 0.59 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 72.0 %: nuclear 12.0 %: cytoplasmic 8.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: plasma membrane >> prediction for VHP284 is nuc
5' end seq. ID	VHP284F
5' end seq.	>VHP284F.Seq ATACGATAGTTTAGATAAAGTTTTATCTTTAATGAAAACTTTGAATAAGAGTTATCTTCA AGATTTTTCTTTCATTGCAGAATGGGAATCATTATCATTTGAAAAGAAGAAAGAGAAATT CTCAAAGTTCACTTGCCATGAATTAAACTTTTTCATCTATAAAAAGGATAAGGAATTCTT TGATCAAGTTGTATTACCATTGGTTCAAACTAAAGGTTATAAAACATTCATTGATCATTA TTTATGTGCCGATAGAAAGAAATTGGAAATATTTGTTATCGATTCAAATAGATTCAACAC TTTAAATGCTTTGGAAATGGTTTTATTAGGTGAGCTATTCCCAGAACATTCAGATTCAAT TTCAAAACTTTTGAAACAAAAAGTTGGCTTCTCTCCAATTTCACCATCTCAATATGATAC AAATTTCAAGATCGCTTTAAATCAATTAGATACTGATATTGAAAGTTTAAAGAGTGGTGA TGATGATCTTTATGATGATGGTAGTAATTTANAACCAATGAGTGTTGGAGGTGGTGGGTN NNNNNNNNN
Length of 5' end seq.	549
3' end seq. ID	VHP284Z
3' end seq.	>VHP284Z.Seq NNNNNNNNNNCAATCATTTATCATGGGAATACATTGCAAATCAAGGTACATTGGAATCAA TCTTGGAATATTTATCAAAGAACAATTTGTATCGTGTTGATTTCTATCATCTCTATCATA GATATACCGATAAGAAAGTTTGGGATAAAGTAATTGAACTCTTAAAGAAATTGAAATTCT ATGAATCTATCACTTGGTCATTCTCTATTCATCATAAGAATTTCGTTTACTTGAAAGATT ACCTCTCTGAACAAATTCATTCCTTATCAATGAAATCAATCGATGCACCATCCATTTATG TTGATCCATTTGAAAATAACTTCATCAAATTCTTGGAATACTCTCCATTGGTTAATTCAA GAACTCATCAAATTGGTGATGAAAGAAAGATTCTTAATAATAAATTATCAAATCAATATT ATGAATTCTGTAGTTTACTTTCATTGAAATTAAATCCATCCGATACTGAATTACTTTCTT TAGCTTATTATTTATTACTTCAAGATAGATTTGATGAATCAATTAAAATTATGAAGAGAA TTGGTAAACATCCAGTTTCAATTCCAAAATTAATTTCTTCTTCAACCACTACTGATTCAA AATCAACTCATTCATCAGTAATTTCTTCTTCTTCCTCTTCAAATTTATCAACCACTACTG ATAGTTCAAAAGATAAAAAGAAACTGAAAAAGAAGAAAAACAAAGAGAAAAAGAAAGAAA ACAAAAAGAAAAAGAAGNATAAAAAGNGNNNAAAAAGAA
Length of 3' end seq.	759
Connected seq. ID	VHP284P
Connected seq.	>VHP284P.Seq ATACGATAGTTTAGATAAAGTTTTATCTTTAATGAAAACTTTGAATAAGAGTTATCTTCA AGATTTTTCTTTCATTGCAGAATGGGAATCATTATCATTTGAAAAGAAGAAAGAGAAATT CTCAAAGTTCACTTGCCATGAATTAAACTTTTTCATCTATAAAAAGGATAAGGAATTCTT TGATCAAGTTGTATTACCATTGGTTCAAACTAAAGGTTATAAAACATTCATTGATCATTA TTTATGTGCCGATAGAAAGAAATTGGAAATATTTGTTATCGATTCAAATAGATTCAACAC TTTAAATGCTTTGGAAATGGTTTTATTAGGTGAGCTATTCCCAGAACATTCAGATTCAAT TTCAAAACTTTTGAAACAAAAAGTTGGCTTCTCTCCAATTTCACCATCTCAATATGATAC AAATTTCAAGATCGCTTTAAATCAATTAGATACTGATATTGAAAGTTTAAAGAGTGGTGA TGATGATCTTTATGATGATGGTAGTAATTTANAACCAATGAGTGTTGGAGGTGGTGGGT- ---------CAATCATTTATCATGGGAATACATTGCAAATCAAGGTACATTGGAATCAAT CTTGGAATATTTATCAAAGAACAATTTGTATCGTGTTGATTTCTATCATCTCTATCATAG ATATACCGATAAGAAAGTTTGGGATAAAGTAATTGAACTCTTAAAGAAATTGAAATTCTA TGAATCTATCACTTGGTCATTCTCTATTCATCATAAGAATTTCGTTTACTTGAAAGATTA CCTCTCTGAACAAATTCATTCCTTATCAATGAAATCAATCGATGCACCATCCATTTATGT TGATCCATTTGAAAATAACTTCATCAAATTCTTGGAATACTCTCCATTGGTTAATTCAAG AACTCATCAAATTGGTGATGAAAGAAAGATTCTTAATAATAAATTATCAAATCAATATTA TGAATTCTGTAGTTTACTTTCATTGAAATTAAATCCATCCGATACTGAATTACTTTCTTT AGCTTATTATTTATTACTTCAAGATAGATTTGATGAATCAATTAAAATTATGAAGAGAAT TGGTAAACATCCAGTTTCAATTCCAAAATTAATTTCTTCTTCAACCACTACTGATTCAAA ATCAACTCATTCATCAGTAATTTCTTCTTCTTCCTCTTCAAATTTATCAACCACTACTGA TAGTTCAAAAGATAAAAAGAAACTGAAAAAGAAGAAAAACAAAGAGAAAAAGAAAGAAAA CAAAAAGAAAAAGAAGNATAAAAAGNGNNNAAAAAGAA
Length of connected seq.	1288
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas