VHP283 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHP283
Library	VH (Link to library)
Clone ID	VHP283 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16473-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHP2-D/VHP283Q.Seq.d/
Representative seq. ID	VHP283P (Link to Original site)
Representative DNA sequence	>VHP283 (VHP283Q) /CSM/VH/VHP2-D/VHP283Q.Seq.d/ ATTATCCAAAAAACTTTTATTTATATATTTATAAAAATGATTTCAAAGACTTCATTATTA TTATTATTATTAAGCATTGTTGCACTCGCATCAGCAATCAGTGTCCAACGTGTCCCAATT GCTGATGTCACTTCTGCACCAGCTCATTTTGTTCAAAATAAATTAGCCAAATCATATGAA TTAGTTCAATTCAAAATTTTATTAAAACAAAGAAATTTAGATATTTTAGAAGAGAAATTC TGGGATGTTTCATCACCAAAATCAGAAAACTATGGTAAATTTTTATCAAAAGAAGAAATT GATTCAATTGTTGCACCATCACCAAAAGATGTTAAAGTTGTTGTTAATTGGTTAATTGAC AATGGTTTATCAAAGAATGAAATGATCGTTCACTCTGATTTCATCCAAGTTAGAACCAAT GTTGGTAAAGCTTCAACTTTATTCGAAACTTCATTTGCTCACTACTCATCAAGCCGTACT GCTCTTAAGAGAATTAGAGTTGTAGGTCAAGCATCTATGCCAATGCATGTTTTAGCAAAA GTTGATTTAGTTTTXXXXXXXXXXTAGCTGTACTTGTGACAAATTAAAACCATACTCTGA TAGTGATGCTGGTTTCAAGATCGTTGGTTACTCTTATGATCAAGATGCTGGTACCCTCTT CCAACCAGATTATCCAGCTTCATCACCATTCATCACCTCTGTTGGTGCCACTCAAATCAC TGATGTTACCAAACCAGAAATTGTTTGTTCAGTCGCAACTGGCGCCATCATTACTGGTGG AGGTGGTGTTGCTATCACTCAAGCTCAACCATCATACCAAGCTGATGCCGTTGCCACTTA CATCAAAAGTGGTACTCTCCCACCATCATATTCATACAATGCCACCAATAGATTCTATCC AGATCTTACTCTTGTTGGTCATGCTTATGAAATCGCCGTTCCAAACACTCTCACCTCAAA TACCTGTCCATGCGCCTTAGAAAGTGTTGATGGTACCTCATGTTCATCACCAACTCTTGC TGGTATGATCTCTTTAATTAATGATAAATTAATTGGTGCTGGTAAACCAACCCTCGGTTT CTTAAATCCATTATTATACCAAGCTGCCAAAGAACAACCAAACGTTTTCAATGATATTAC CACTGGTGCAAACAACTGTAACAGAGCTTACTGTTGTCAATATGGTTACACCGCTACCAC TGGTTATGATGCTGCCTCAGGTTTAGGTTCAATTAACTTTAAGAACTTGAACAATACGTT TTAAGTTTAAACTAAATAATATAATAAATAAATATATAAATAAATATAAATCGATT
sequence update	2002.10.25
Translated Amino Acid sequence	IIQKTFIYIFIKMISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYE LVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLID NGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAK VDLV--- ---SCTCDKLKPYSDSDAGFKIVGYSYDQDAGTLFQPDYPASSPFITSVGATQITDVTKP EIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLV GHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLL YQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNLNNTFvtk ynkiykiid
Translated Amino Acid sequence (All Frames)	Frame A: IIQKTFIYIFIKMISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYE LVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLID NGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAK VDLV--- ---lylqiktil**cwfqdrwlllsrcwyplptrlssfitihhlcwchsnhcyqt rnclfsrnwrhhywwrwccyhssstiipscrchlhqkwysptiifiqchqilsrsysc wsclnrrskhshlkylsmrlrkcwylmfitnscwydlfn*inwcwtnprflksii ipscqrttkrfqyyhwckqlqslllsiwlhryhwlcclrfrfnleleqyvlsln ii*iniininr Frame B: lskkllfiylkfqrlhyyyyyallhshqqsvsnvsqllmsllhqlilfkinpnhmn fnskfynkeiifkrnsgmfhhqnqktmvnfyqkkkliqllhhhqkmlkllliglt mvyqrmksftlissklepmlvklqlysklhlltthqavlllrelelvkhlcqcmfqk lif--- ---SCTCDKLKPYSDSDAGFKIVGYSYDQDAGTLFQPDYPASSPFITSVGATQITDVTKP EIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLV GHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLL YQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNLNNTFvtk ynkiykiid Frame C: ypknfylyiykndfkdfiiiiiikhcctrisnqcptcpncchfctssfcskisqiii ssiqnfiktkkfryfrreilgcfitkirklwifikrrnfncctitkrcscclvnq wfikendrslfhpsnqcwsfnfirnficsllikpycsenscrssiyanacfsks fsf--- ---avlvtnnhtlivmlvsrslvtlmikmlvpssnqiiqlhhhsspllvplkslmlpnq klfvqsqlapsllvevvllslklnhhtklmplpltskvvlshhhihtmppidsiqillll vmlmkspfqtlspqipvhapkvlmvphvhhqlllvsllminlvlvnqpsvsihyy tklpknnqtfsmilplvqttvteltvvnmvtplplvmmlpqvvqltlrttirfkfkln niinkyinkyksi
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHP283 (VHP283Q) /CSM/VH/VHP2-D/VHP283Q.Seq.d/ 2319 0.0 VHI271 (VHI271Q) /CSM/VH/VHI2-C/VHI271Q.Seq.d/ 2313 0.0 VHQ223 (VHQ223Q) /CSM/VH/VHQ2-A/VHQ223Q.Seq.d/ 1403 0.0 VHB471 (VHB471Q) /CSM/VH/VHB4-C/VHB471Q.Seq.d/ 1403 0.0 VHB269 (VHB269Q) /CSM/VH/VHB2-C/VHB269Q.Seq.d/ 1403 0.0 VHO583 (VHO583Q) /CSM/VH/VHO5-D/VHO583Q.Seq.d/ 1402 0.0 VHA547 (VHA547Q) /CSM/VH/VHA5-B/VHA547Q.Seq.d/ 1402 0.0 VHI421 (VHI421Q) /CSM/VH/VHI4-A/VHI421Q.Seq.d/ 1400 0.0 VHB338 (VHB338Q) /CSM/VH/VHB3-B/VHB338Q.Seq.d/ 1390 0.0 VHB114 (VHB114Q) /CSM/VH/VHB1-A/VHB114Q.Seq.d/ 1390 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N (BJ446584) Dictyostelium discoideum cDNA clone:ddv63m06, 3' ... 1403 0.0 1 (BJ446146) Dictyostelium discoideum cDNA clone:ddv61e22, 3' ... 1403 0.0 1 (BJ437259) Dictyostelium discoideum cDNA clone:ddv33n18, 3' ... 1403 0.0 1 (BJ437233) Dictyostelium discoideum cDNA clone:ddv33i18, 3' ... 1403 0.0 1 (BJ445836) Dictyostelium discoideum cDNA clone:ddv60e21, 3' ... 1402 0.0 1 (BJ441735) Dictyostelium discoideum cDNA clone:ddv47m18, 3' ... 1402 0.0 1 (BJ436850) Dictyostelium discoideum cDNA clone:ddv32m11, 3' ... 1402 0.0 1 (BJ441571) Dictyostelium discoideum cDNA clone:ddv47j06, 3' ... 1400 0.0 1 (BJ437164) Dictyostelium discoideum cDNA clone:ddv33l09, 3' ... 1356 0.0 2 (BJ437081) Dictyostelium discoideum cDNA clone:ddv33k03, 3' ... 1356 0.0 2
dna update	2008.12.15
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value U27540_1(U27540\|pid:none) Dictyostelium discoideum vegetative st... 380 e-104 AC115599_50(AC115599\|pid:none) Dictyostelium discoideum chromoso... 254 4e-66 AM411678_1(AM411678\|pid:none) Plasmodiophora brassicae ORF1 for ... 140 1e-31 (Q8MZS4) RecName: Full=Physarolisin; EC=3.4.21.103; Alt... 138 4e-31 DQ242648_1(DQ242648\|pid:none) Phanerochaete chrysosporium family... 131 6e-29 AC116960_13(AC116960\|pid:none) Dictyostelium discoideum chromoso... 113 1e-23 AB276124_1(AB276124\|pid:none) Actinophrys sol mRNA for sedolisin... 110 1e-22 (Q9EQV6) RecName: Full=Tripeptidyl-peptidase 1; Short=T... 106 2e-21 AM270317_43(AM270317\|pid:none) Aspergillus niger contig An14c010... 105 5e-21 AJ011912_1(AJ011912\|pid:none) Mus musculus mRNA for putative tri... 103 2e-20
protein update	2009. 7.20
PSORT	psg: 0.84 gvh: 0.94 alm: 0.35 top: 0.37 tms: 0.00 mit: 0.45 mip: 0.12 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 64.0 %: extracellular, including cell wall 16.0 %: mitochondrial 8.0 %: vacuolar 8.0 %: endoplasmic reticulum 4.0 %: cytoplasmic >> prediction for VHP283 is exc
5' end seq. ID	VHP283F
5' end seq.	>VHP283F.Seq ATTATCCAAAAAACTTTTATTTATATATTTATAAAAATGATTTCAAAGACTTCATTATTA TTATTATTATTAAGCATTGTTGCACTCGCATCAGCAATCAGTGTCCAACGTGTCCCAATT GCTGATGTCACTTCTGCACCAGCTCATTTTGTTCAAAATAAATTAGCCAAATCATATGAA TTAGTTCAATTCAAAATTTTATTAAAACAAAGAAATTTAGATATTTTAGAAGAGAAATTC TGGGATGTTTCATCACCAAAATCAGAAAACTATGGTAAATTTTTATCAAAAGAAGAAATT GATTCAATTGTTGCACCATCACCAAAAGATGTTAAAGTTGTTGTTAATTGGTTAATTGAC AATGGTTTATCAAAGAATGAAATGATCGTTCACTCTGATTTCATCCAAGTTAGAACCAAT GTTGGTAAAGCTTCAACTTTATTCGAAACTTCATTTGCTCACTACTCATCAAGCCGTACT GCTCTTAAGAGAATTAGAGTTGTAGGTCAAGCATCTATGCCAATGCATGTTTTAGCAAAA GTTGATTTAGTTTTNNNNNNNNNN
Length of 5' end seq.	564
3' end seq. ID	VHP283Z
3' end seq.	>VHP283Z.Seq NNNNNNNNNNTAGCTGTACTTGTGACAAATTAAAACCATACTCTGATAGTGATGCTGGTT TCAAGATCGTTGGTTACTCTTATGATCAAGATGCTGGTACCCTCTTCCAACCAGATTATC CAGCTTCATCACCATTCATCACCTCTGTTGGTGCCACTCAAATCACTGATGTTACCAAAC CAGAAATTGTTTGTTCAGTCGCAACTGGCGCCATCATTACTGGTGGAGGTGGTGTTGCTA TCACTCAAGCTCAACCATCATACCAAGCTGATGCCGTTGCCACTTACATCAAAAGTGGTA CTCTCCCACCATCATATTCATACAATGCCACCAATAGATTCTATCCAGATCTTACTCTTG TTGGTCATGCTTATGAAATCGCCGTTCCAAACACTCTCACCTCAAATACCTGTCCATGCG CCTTAGAAAGTGTTGATGGTACCTCATGTTCATCACCAACTCTTGCTGGTATGATCTCTT TAATTAATGATAAATTAATTGGTGCTGGTAAACCAACCCTCGGTTTCTTAAATCCATTAT TATACCAAGCTGCCAAAGAACAACCAAACGTTTTCAATGATATTACCACTGGTGCAAACA ACTGTAACAGAGCTTACTGTTGTCAATATGGTTACACCGCTACCACTGGTTATGATGCTG CCTCAGGTTTAGGTTCAATTAACTTTAAGAACTTGAACAATACGTTTTAAGTTTAAACTA AATAATATAATAAATAAATATATAAATAAATATAAATCGATT
Length of 3' end seq.	762
Connected seq. ID	VHP283P
Connected seq.	>VHP283P.Seq ATTATCCAAAAAACTTTTATTTATATATTTATAAAAATGATTTCAAAGACTTCATTATTA TTATTATTATTAAGCATTGTTGCACTCGCATCAGCAATCAGTGTCCAACGTGTCCCAATT GCTGATGTCACTTCTGCACCAGCTCATTTTGTTCAAAATAAATTAGCCAAATCATATGAA TTAGTTCAATTCAAAATTTTATTAAAACAAAGAAATTTAGATATTTTAGAAGAGAAATTC TGGGATGTTTCATCACCAAAATCAGAAAACTATGGTAAATTTTTATCAAAAGAAGAAATT GATTCAATTGTTGCACCATCACCAAAAGATGTTAAAGTTGTTGTTAATTGGTTAATTGAC AATGGTTTATCAAAGAATGAAATGATCGTTCACTCTGATTTCATCCAAGTTAGAACCAAT GTTGGTAAAGCTTCAACTTTATTCGAAACTTCATTTGCTCACTACTCATCAAGCCGTACT GCTCTTAAGAGAATTAGAGTTGTAGGTCAAGCATCTATGCCAATGCATGTTTTAGCAAAA GTTGATTTAGTTTT----------TAGCTGTACTTGTGACAAATTAAAACCATACTCTGA TAGTGATGCTGGTTTCAAGATCGTTGGTTACTCTTATGATCAAGATGCTGGTACCCTCTT CCAACCAGATTATCCAGCTTCATCACCATTCATCACCTCTGTTGGTGCCACTCAAATCAC TGATGTTACCAAACCAGAAATTGTTTGTTCAGTCGCAACTGGCGCCATCATTACTGGTGG AGGTGGTGTTGCTATCACTCAAGCTCAACCATCATACCAAGCTGATGCCGTTGCCACTTA CATCAAAAGTGGTACTCTCCCACCATCATATTCATACAATGCCACCAATAGATTCTATCC AGATCTTACTCTTGTTGGTCATGCTTATGAAATCGCCGTTCCAAACACTCTCACCTCAAA TACCTGTCCATGCGCCTTAGAAAGTGTTGATGGTACCTCATGTTCATCACCAACTCTTGC TGGTATGATCTCTTTAATTAATGATAAATTAATTGGTGCTGGTAAACCAACCCTCGGTTT CTTAAATCCATTATTATACCAAGCTGCCAAAGAACAACCAAACGTTTTCAATGATATTAC CACTGGTGCAAACAACTGTAACAGAGCTTACTGTTGTCAATATGGTTACACCGCTACCAC TGGTTATGATGCTGCCTCAGGTTTAGGTTCAATTAACTTTAAGAACTTGAACAATACGTT TTAAGTTTAAACTAAATAATATAATAAATAAATATATAAATAAATATAAATCGATT
Length of connected seq.	1306
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas