NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP267
Library VH
(Link to library)
Clone ID VHP267
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHP267P
(Link to Original site)
Representative DNA sequence 
>VHP267 (VHP267Q) /CSM/VH/VHP2-C/VHP267Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAGT
TTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCAT
TAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGG
TTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAG
TTCANAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGT
CGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAA
ACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATXXXXXXXXXXAACCACGAATGG
GATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTC
CTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGT
GCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGT
TTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATC
ATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTA
GAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCT
GTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTA
TTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGT
TCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCCTCGATCATTGGGCTTCAATTGGT
GTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGT
TTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTC
GCACTTTNAGTTTTCAAANATAGTAATCAAATCTAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*V
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SXVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFL---

---NHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCD
ENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPEN
AIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVL
DHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*ti*valxvfkxsnqi*k
k
Translated Amino Acid sequence (All Frames) 
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpis
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
fxsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsfl---

---NHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCD
ENMRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPEN
AIGGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVL
DHWASIGVVNKDKKATEVALATRKRKGLAPEIPDLDKFHEKL*ti*valxvfkxsnqi*k
k

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*V
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SXVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFL---

---ttngikmmp*tfglsvqkvtvpisssmspkvfni*mklkilslvlsngppkkvlfvm
kt*evsvsifmmspstlmpstevvvkssqllvvysmlln*lppqls*nqst**kllpqkt
llvvftlysivvevlllvknvvsvphyslskliyqy*npsvspliyvptlpvklshnvss
iiglqlvlstkirkplksl*pperekv*pqksqiltnstknskqfkshfxfsxivikskk

Frame C:
lssakkvkykmvnftidqiraimdrrenirnmsviahvdhgkttlsdsliqragiiadkf
lvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlisv
xk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy---

---prmg*k*chehlvfrsrr*rcqsprqchqrcsife*n*rffrwcfpmghqrrccl**
kherypfqsl*chpph*chpqrwwsnhpncssctlcc*inclpnslrtnllsrnycprkr
ywwyllctqss*rycyw*rtsyrfpiilcqssftsirilrfhr*ftfphcrssfptmcpr
slgfnwccqqr*esh*srfshqkekrfsprnprs*qiprktlnnlsrtxsfqx**snlkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP267 (VHP267Q) /CSM/VH/VHP2-C/VHP267Q.Seq.d/                       2329   0.0
VHQ446 (VHQ446Q) /CSM/VH/VHQ4-B/VHQ446Q.Seq.d/                       1380   0.0
VHQ318 (VHQ318Q) /CSM/VH/VHQ3-A/VHQ318Q.Seq.d/                       1380   0.0
VHP769 (VHP769Q) /CSM/VH/VHP7-C/VHP769Q.Seq.d/                       1380   0.0
VHO836 (VHO836Q) /CSM/VH/VHO8-B/VHO836Q.Seq.d/                       1380   0.0
VHO414 (VHO414Q) /CSM/VH/VHO4-A/VHO414Q.Seq.d/                       1380   0.0
VHN719 (VHN719Q) /CSM/VH/VHN7-A/VHN719Q.Seq.d/                       1380   0.0
VHK606 (VHK606Q) /CSM/VH/VHK6-A/VHK606Q.Seq.d/                       1380   0.0
VHK218 (VHK218Q) /CSM/VH/VHK2-A/VHK218Q.Seq.d/                       1380   0.0
VHK172 (VHK172Q) /CSM/VH/VHK1-C/VHK172Q.Seq.d/                       1380   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ446070) Dictyostelium discoideum cDNA clone:ddv61e18, 3' ...  1388   0.0    1
(AU039435) Dictyostelium discoideum slug cDNA, clone SLH782.     1380   0.0    1
(BJ446651) Dictyostelium discoideum cDNA clone:ddv63l12, 3' ...  1380   0.0    1
(BJ446540) Dictyostelium discoideum cDNA clone:ddv63d05, 3' ...  1380   0.0    1
(BJ446408) Dictyostelium discoideum cDNA clone:ddv62j17, 3' ...  1380   0.0    1
(BJ445700) Dictyostelium discoideum cDNA clone:ddv60h10, 3' ...  1380   0.0    1
(BJ445331) Dictyostelium discoideum cDNA clone:ddv59l04, 3' ...  1380   0.0    1
(BJ444980) Dictyostelium discoideum cDNA clone:ddv58f05, 3' ...  1380   0.0    1
(BJ443177) Dictyostelium discoideum cDNA clone:ddv52k02, 3' ...  1380   0.0    1
(BJ443033) Dictyostelium discoideum cDNA clone:ddv51o17, 3' ...  1380   0.0    1
dna update 2008.12.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation...   284   5e-75
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat...   283   1e-74
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088...   281   3e-74
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328...   281   3e-74
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote...   281   4e-74
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120...   280   6e-74
BT072304_1(BT072304|pid:none) Salmo salar clone ssal-rgf-520-280...   280   8e-74
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio...   278   2e-73
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w...   278   2e-73
AK298498_1(AK298498|pid:none) Homo sapiens cDNA FLJ56548 complet...   278   2e-73
protein update 2009. 7.20
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for VHP267 is

5' end seq. ID VHP267F
5' end seq. 
>VHP267F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAGT
TTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCAT
TAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGG
TTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAG
TTCANAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGT
CGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAA
ACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATNNNNNNNNNN
Length of 5' end seq. 528
3' end seq. ID VHP267Z
3' end seq. 
>VHP267Z.Seq
NNNNNNNNNNAACCACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCC
AGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGA
AATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGA
TGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCAT
CCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATT
AACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAA
CGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGA
ACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTT
CGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCCT
CGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTT
AGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGA
AAAACTCTAAACAATTTAAGTCGCACTTTNAGTTTTCAAANATAGTAATCAAATCTAAAA
AAAA
Length of 3' end seq. 724
Connected seq. ID VHP267P
Connected seq. 
>VHP267P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAGT
TTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCAT
TAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTGG
TTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCAG
TTCANAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCGT
CGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCAA
ACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTAT----------AACCACGAATGG
GATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTC
CTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGT
GCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGT
TTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATC
ATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTA
GAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCT
GTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTA
TTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGT
TCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCCTCGATCATTGGGCTTCAATTGGT
GTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGT
TTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTC
GCACTTTNAGTTTTCAAANATAGTAATCAAATCTAAAAAAAA
Length of connected seq. 1232
Full length Seq ID -
Full length Seq. -
Length of full length seq. -