VHP254
Library VH
(Link to library)
Clone ID VHP254
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15666-1
Original site URL
Representative seq. ID VHP254P
(Link to Original site)
Representative DNA sequence
>VHP254 (VHP254Q) /CSM/VH/VHP2-C/VHP254Q.Seq.d/
AAAGTGTTGTTCAACTATTAACCCAACATTTATGATAAATAAATAAAAAAGGAGGGAAAA
AAAAATGAATGTAAAGGAAATGGATTTTAATGATTTATCAAATAAATCCAATCAAATAAT
CAATAGAATATCATCATTTTCAAGTCCAATTGGGTTATCATCATTCAACATTGAAAGAAA
TCTACAAGAGATTGGTGATACATCAAAACAATTGAATGATTTAACTTCATCAAAAACTCC
ATTTTCAAATCCATTGGAACCAAATGTATTTCAAGATTCTAAAATTAATAGAAAATATGG
ATTAGATCCAAAAGTTTTAGCAAAGAATTTATCTAATATCAATACATCATCATTCACAGA
TGTTCAATCAGTACCAACAGATATTGATGGTTATTTAAAGGTTCAATTTGAGAATATCAT
TTTGAATACAATTTGTGACATTCAAAAAAAGACATCAAAAGAGTTTCAATCCCATTATGA
ACAAACATCAATTCATGATTGGAATAGAGATAAAAAATATTTAGAGGAGATTTTAGGTCA
AAAACATATTAAAGTTTTACCXXXXXXXXXXCTTTTAATTGCTGATAATGATATTAAAAT
CCAAGAAATTTCTGAACTTGTAGTATCATCTCCAAATGGTTTTAAATTTGCTCATGAATT
ATCTTTATTTTCTGAATTTATAAATAAACAACAATGGAGAACTATTATAGAACAATCAGC
ATTGGAATTAGAGAATAAGAATGAATATCAAAGTGCAATTGAATTTTGGATTATGATTGA
AGAGTATCCAAGAGTTTTAGAGATTTATAATAGTAGAATATCGGTATTATTAACCTCAAT
TTCAAGTGAAAGAGATCAATTATATCAATTTGGTAAGCAATTATTCAATGATTATCAAGG
TAGATTAAAAACAACCTCAACAGCAAGAACCAGTTATTTAGCCTTTGAGCAATTATTGAA
ACTTTGCGATTTCTTTGACCTATACAACAAAGAAAAGTATCAAGAGGCAATTCAAAAGAT
TGAAAATTTGGAAATCTTACCAATCTCTGAATCAGAAATCGATTCAAAGGTACAAGATTA
TCGTTTCCTTTCACCACATATCACTAGAAATTTCTCTTCTATCATTCAAGCATACGTTGA
CATCATTGTTAAACAATACCATTTACTAAATAACTTTGACGAATTTACTAATCGTAGTGC
CTTATTTGCTGGTCGTAAACAAACCATTCAAGATCTTCAATCTAGAACTCAATGTATTGC
TTTGTTTGCTGGTAAAATAGATTTCCCAATGTCGGTAATATCNTACCTCGTTTA
sequence update 2002.10.25
Translated Amino Acid sequence
kccstinptfmink*KRREKKMNVKEMDFNDLSNKSNQIINRISSFSSPIGLSSFNIERN
LQEIGDTSKQLNDLTSSKTPFSNPLEPNVFQDSKINRKYGLDPKVLAKNLSNINTSSFTD
VQSVPTDIDGYLKVQFENIILNTICDIQKKTSKEFQSHYEQTSIHDWNRDKKYLEEILGQ
KHIKVL---

---LLIADNDIKIQEISELVVSSPNGFKFAHELSLFSEFINKQQWRTIIEQSALELENKN
EYQSAIEFWIMIEEYPRVLEIYNSRISVLLTSISSERDQLYQFGKQLFNDYQGRLKTTST
ARTSYLAFEQLLKLCDFFDLYNKEKYQEAIQKIENLEILPISESEIDSKVQDYRFLSPHI
TRNFSSIIQAYVDIIVKQYHLLNNFDEFTNRSALFAGRKQTIQDLQSRTQCIALFAGKID
FPMSVISYLV


Translated Amino Acid sequence (All Frames)
Frame A:
kvlfny*pniydk*ikkegkkneckgngf**fik*iqsnnq*niiifksnwviiiqh*kk
strdw*yiktie*fnfiknsifksigtkcisrf*n**kiwirsksfskefi*yqyiiihr
csistnry*wlfkgsi*eyhfeynl*hskkdikrvsipl*tnins*le*r*kifrgdfrs
kty*sft---

---LLIADNDIKIQEISELVVSSPNGFKFAHELSLFSEFINKQQWRTIIEQSALELENKN
EYQSAIEFWIMIEEYPRVLEIYNSRISVLLTSISSERDQLYQFGKQLFNDYQGRLKTTST
ARTSYLAFEQLLKLCDFFDLYNKEKYQEAIQKIENLEILPISESEIDSKVQDYRFLSPHI
TRNFSSIIQAYVDIIVKQYHLLNNFDEFTNRSALFAGRKQTIQDLQSRTQCIALFAGKID
FPMSVISYLV

Frame B:
kccstinptfmink*KRREKKMNVKEMDFNDLSNKSNQIINRISSFSSPIGLSSFNIERN
LQEIGDTSKQLNDLTSSKTPFSNPLEPNVFQDSKINRKYGLDPKVLAKNLSNINTSSFTD
VQSVPTDIDGYLKVQFENIILNTICDIQKKTSKEFQSHYEQTSIHDWNRDKKYLEEILGQ
KHIKVL---

---f*llimilkskkflnl*yhlqmvlnllmnylyflnl*innngell*nnqhwn*rirm
nikvqlnfgl*lksiqef*rfiiveyryy*pqfqvkeinyinlvsnysmiikvd*kqpqq
qepvi*plsny*nfaisltyttkksikrqfkrlkiwksyqslnqksiqrykiivsfhhis
leisllsfkhtltsllnntiy*itltnllivvpyllvvnkpfkifnlelnvllcllvk*i
sqcr*yxtsf

Frame C:
svvqlltqhl**inkkggkkk*m*rkwilmiyqinpik*sieyhhfqvqlgyhhstlkei
ykrlvihqnn*mi*lhqklhfqihwnqmyfkilklienmd*iqkf*qriylisihhhsqm
fnqyqqilmvi*rfnlrisf*iqfvtfkkrhqksfnpimnkhqfmigieikni*rrf*vk
nilkfy---

---fnc***y*nprnf*tcsiiskwf*ics*iifif*iyk*ttmenyyrtisigire*e*
iskcn*ildyd*rvsksfrdl***nigiinlnfk*krsiisiw*aiiq*lsr*iknnlns
knqlfsl*aiietlrfl*piqqrkvsrgnskd*kfgnltnl*irnrfkgtrlsfpfttyh
*kflfyhssir*hhc*tipftk*l*riy*s*clicws*tnhsrssi*nsmycfvcw*nrf
pnvgnixprl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP254 (VHP254Q) /CSM/VH/VHP2-C/VHP254Q.Seq.d/ 2444 0.0
VHP160 (VHP160Q) /CSM/VH/VHP1-C/VHP160Q.Seq.d/ 1457 0.0
AHD783 (AHD783Q) /CSM/AH/AHD7-D/AHD783Q.Seq.d/ 1453 0.0
AHD282 (AHD282Q) /CSM/AH/AHD2-D/AHD282Q.Seq.d/ 1453 0.0
AHM804 (AHM804Q) /CSM/AH/AHM8-A/AHM804Q.Seq.d/ 1451 0.0
AHF539 (AHF539Q) /CSM/AH/AHF5-B/AHF539Q.Seq.d/ 1445 0.0
AHD140 (AHD140Q) /CSM/AH/AHD1-B/AHD140Q.Seq.d/ 1445 0.0
AHN719 (AHN719Q) /CSM/AH/AHN7-A/AHN719Q.Seq.d/ 1443 0.0
VHC228 (VHC228Q) /CSM/VH/VHC2-B/VHC228Q.Seq.d/ 1437 0.0
VHA241 (VHA241Q) /CSM/VH/VHA2-B/VHA241Q.Seq.d/ 1437 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446093) Dictyostelium discoideum cDNA clone:ddv61k14, 3' ... 1467 0.0 1
(BJ446076) Dictyostelium discoideum cDNA clone:ddv61g15, 3' ... 1457 0.0 1
(BJ355212) Dictyostelium discoideum cDNA clone:dda56h02, 3' ... 1451 0.0 1
(BJ350124) Dictyostelium discoideum cDNA clone:dda38f21, 3' ... 1431 0.0 2
(BJ349826) Dictyostelium discoideum cDNA clone:dda37c22, 3' ... 1431 0.0 2
(BJ355740) Dictyostelium discoideum cDNA clone:dda58f05, 3' ... 1429 0.0 2
(BJ346103) Dictyostelium discoideum cDNA clone:dda29i06, 3' ... 1429 0.0 1
(BJ351208) Dictyostelium discoideum cDNA clone:dda42m09, 3' ... 1423 0.0 2
(BJ349727) Dictyostelium discoideum cDNA clone:dda37o09, 3' ... 1423 0.0 2
(BJ437769) Dictyostelium discoideum cDNA clone:ddv35g08, 3' ... 1415 0.0 2
dna update 2008.12.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q7ZX96) RecName: Full=Nuclear pore complex protein Nup93; AltNa... 79 3e-13
U63919_1(U63919|pid:none) Xenopus laevis An4a mRNA, complete cds. 79 3e-13
BX470170_7(BX470170|pid:none) Zebrafish DNA sequence from clone ... 76 2e-12
(Q7ZU29) RecName: Full=Nuclear pore complex protein Nup93; AltNa... 76 2e-12
DQ156149_2(DQ156149|pid:none) Salmo salar clone BAC S0085O16, pa... 75 5e-12
U77595_1(U77595|pid:none) Danio rerio dye mRNA, complete cds. 75 7e-12
BT045693_1(BT045693|pid:none) Salmo salar clone ssal-rgf-528-376... 74 9e-12
(A5PJZ5) RecName: Full=Nuclear pore complex protein Nup93; AltNa... 68 8e-10
(Q5R822) RecName: Full=Nuclear pore complex protein Nup93; AltNa... 67 1e-09
CR859933_1(CR859933|pid:none) Pongo abelii mRNA; cDNA DKFZp469K1... 67 1e-09
protein update 2009. 7.20
PSORT

psg: 0.57 gvh: 0.44 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: mitochondrial
28.0 %: nuclear

>> prediction for VHP254 is cyt

5' end seq. ID VHP254F
5' end seq.
>VHP254F.Seq
AAAGTGTTGTTCAACTATTAACCCAACATTTATGATAAATAAATAAAAAAGGAGGGAAAA
AAAAATGAATGTAAAGGAAATGGATTTTAATGATTTATCAAATAAATCCAATCAAATAAT
CAATAGAATATCATCATTTTCAAGTCCAATTGGGTTATCATCATTCAACATTGAAAGAAA
TCTACAAGAGATTGGTGATACATCAAAACAATTGAATGATTTAACTTCATCAAAAACTCC
ATTTTCAAATCCATTGGAACCAAATGTATTTCAAGATTCTAAAATTAATAGAAAATATGG
ATTAGATCCAAAAGTTTTAGCAAAGAATTTATCTAATATCAATACATCATCATTCACAGA
TGTTCAATCAGTACCAACAGATATTGATGGTTATTTAAAGGTTCAATTTGAGAATATCAT
TTTGAATACAATTTGTGACATTCAAAAAAAGACATCAAAAGAGTTTCAATCCCATTATGA
ACAAACATCAATTCATGATTGGAATAGAGATAAAAAATATTTAGAGGAGATTTTAGGTCA
AAAACATATTAAAGTTTTACCNNNNNNNNNN
Length of 5' end seq. 571
3' end seq. ID VHP254Z
3' end seq.
>VHP254Z.Seq
NNNNNNNNNNCTTTTAATTGCTGATAATGATATTAAAATCCAAGAAATTTCTGAACTTGT
AGTATCATCTCCAAATGGTTTTAAATTTGCTCATGAATTATCTTTATTTTCTGAATTTAT
AAATAAACAACAATGGAGAACTATTATAGAACAATCAGCATTGGAATTAGAGAATAAGAA
TGAATATCAAAGTGCAATTGAATTTTGGATTATGATTGAAGAGTATCCAAGAGTTTTAGA
GATTTATAATAGTAGAATATCGGTATTATTAACCTCAATTTCAAGTGAAAGAGATCAATT
ATATCAATTTGGTAAGCAATTATTCAATGATTATCAAGGTAGATTAAAAACAACCTCAAC
AGCAAGAACCAGTTATTTAGCCTTTGAGCAATTATTGAAACTTTGCGATTTCTTTGACCT
ATACAACAAAGAAAAGTATCAAGAGGCAATTCAAAAGATTGAAAATTTGGAAATCTTACC
AATCTCTGAATCAGAAATCGATTCAAAGGTACAAGATTATCGTTTCCTTTCACCACATAT
CACTAGAAATTTCTCTTCTATCATTCAAGCATACGTTGACATCATTGTTAAACAATACCA
TTTACTAAATAACTTTGACGAATTTACTAATCGTAGTGCCTTATTTGCTGGTCGTAAACA
AACCATTCAAGATCTTCAATCTAGAACTCAATGTATTGCTTTGTTTGCTGGTAAAATAGA
TTTCCCAATGTCGGTAATATCNTACCTCGTTTA
Length of 3' end seq. 753
Connected seq. ID VHP254P
Connected seq.
>VHP254P.Seq
AAAGTGTTGTTCAACTATTAACCCAACATTTATGATAAATAAATAAAAAAGGAGGGAAAA
AAAAATGAATGTAAAGGAAATGGATTTTAATGATTTATCAAATAAATCCAATCAAATAAT
CAATAGAATATCATCATTTTCAAGTCCAATTGGGTTATCATCATTCAACATTGAAAGAAA
TCTACAAGAGATTGGTGATACATCAAAACAATTGAATGATTTAACTTCATCAAAAACTCC
ATTTTCAAATCCATTGGAACCAAATGTATTTCAAGATTCTAAAATTAATAGAAAATATGG
ATTAGATCCAAAAGTTTTAGCAAAGAATTTATCTAATATCAATACATCATCATTCACAGA
TGTTCAATCAGTACCAACAGATATTGATGGTTATTTAAAGGTTCAATTTGAGAATATCAT
TTTGAATACAATTTGTGACATTCAAAAAAAGACATCAAAAGAGTTTCAATCCCATTATGA
ACAAACATCAATTCATGATTGGAATAGAGATAAAAAATATTTAGAGGAGATTTTAGGTCA
AAAACATATTAAAGTTTTACC----------CTTTTAATTGCTGATAATGATATTAAAAT
CCAAGAAATTTCTGAACTTGTAGTATCATCTCCAAATGGTTTTAAATTTGCTCATGAATT
ATCTTTATTTTCTGAATTTATAAATAAACAACAATGGAGAACTATTATAGAACAATCAGC
ATTGGAATTAGAGAATAAGAATGAATATCAAAGTGCAATTGAATTTTGGATTATGATTGA
AGAGTATCCAAGAGTTTTAGAGATTTATAATAGTAGAATATCGGTATTATTAACCTCAAT
TTCAAGTGAAAGAGATCAATTATATCAATTTGGTAAGCAATTATTCAATGATTATCAAGG
TAGATTAAAAACAACCTCAACAGCAAGAACCAGTTATTTAGCCTTTGAGCAATTATTGAA
ACTTTGCGATTTCTTTGACCTATACAACAAAGAAAAGTATCAAGAGGCAATTCAAAAGAT
TGAAAATTTGGAAATCTTACCAATCTCTGAATCAGAAATCGATTCAAAGGTACAAGATTA
TCGTTTCCTTTCACCACATATCACTAGAAATTTCTCTTCTATCATTCAAGCATACGTTGA
CATCATTGTTAAACAATACCATTTACTAAATAACTTTGACGAATTTACTAATCGTAGTGC
CTTATTTGCTGGTCGTAAACAAACCATTCAAGATCTTCAATCTAGAACTCAATGTATTGC
TTTGTTTGCTGGTAAAATAGATTTCCCAATGTCGGTAATATCNTACCTCGTTTA
Length of connected seq. 1304
Full length Seq ID -
Full length Seq. -
Length of full length seq. -