>VHP253 (VHP253Q) /CSM/VH/VHP2-C/VHP253Q.Seq.d/
XXXXXXXXXXAATGCAATTATTCGCTGGTATTAAAAGTATTTGCACAGAGATGGCAATGG
ATGGTTGTGAGAAATGTTCAGGAAATTCACCAACTACCACCTGTGATGTTTTGCCAGTTT
ACTCCTCCCTTTGTATGGCTATGCCTGATATGTCACAATGTGCCAATTGGACCAAGATGT
GTTCCTCCTCTGGTCAACTCTACAACTCTCAAATCACATCAGACTATTGTGTCGCCTCTG
TTGCTGACGCCGTTCCAATCATGAGAATGTACTTTCACACTGGTATCTTGGACTATATCC
TCTTTAAATCTTGGGTACCAAGAACTGACCGTCAATTTGCTGGTTCATGGTTTGC

---MQLFAGIKSICTEMAMDGCEKCSGNSPTTTCDVLPVYSSLCMAMPDMSQCANWTKMC
SSSGQLYNSQITSDYCVASVADAVPIMRMYFHTGILDYILFKSWVPRTDRQFAGSWF

Frame A:
---MQLFAGIKSICTEMAMDGCEKCSGNSPTTTCDVLPVYSSLCMAMPDMSQCANWTKMC
SSSGQLYNSQITSDYCVASVADAVPIMRMYFHTGILDYILFKSWVPRTDRQFAGSWF


Frame B:
---cnyslvlkvfaqrwqwmvvrnvqeihqlppvmfcqftppfvwlclichnvpigprcv
pplvnsttlkshqtivspllltpfqs*ectftlvswtisslnlgyqeltvnllvhgl


Frame C:
---aiirwy*kylhrdgngwl*emfrkftnyhl*cfaslllplygya*yvtmcqldqdvf
llwstlqlsnhirllcrlcc*rrsnhenvlshwylglypl*ilgtkn*psicwfmvc

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP801 (VHP801Q) /CSM/VH/VHP8-A/VHP801Q.Seq.d/                        684   0.0
VHP253 (VHP253Q) /CSM/VH/VHP2-C/VHP253Q.Seq.d/                        684   0.0
VHM865 (VHM865Q) /CSM/VH/VHM8-C/VHM865Q.Seq.d/                        684   0.0
VHM772 (VHM772Q) /CSM/VH/VHM7-C/VHM772Q.Seq.d/                        684   0.0
VHM580 (VHM580Q) /CSM/VH/VHM5-D/VHM580Q.Seq.d/                        684   0.0
VHE424 (VHE424Q) /CSM/VH/VHE4-A/VHE424Q.Seq.d/                        684   0.0
VHA195 (VHA195Q) /CSM/VH/VHA1-D/VHA195Q.Seq.d/                        684   0.0
VFI662 (VFI662Q) /CSM/VF/VFI6-C/VFI662Q.Seq.d/                        684   0.0
VFG734 (VFG734Q) /CSM/VF/VFG7-B/VFG734Q.Seq.d/                        684   0.0
VFF667 (VFF667Q) /CSM/VF/VFF6-C/VFF667Q.Seq.d/                        684   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ315489|AJ315489.1 Dictyostelium discoideum mRNA for p80 protein.   684   0.0    1
AC098538|AC098538.6 Rattus norvegicus clone CH230-92N23, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces.    38   0.34   2
BQ973553|BQ973553.1 QHI13C15.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHI13C15, mRNA sequence.    32   3.3    2
BM537583|BM537583.1 ha84b07.g1 Canis cDNAs from testes cells Canis familiaris cDNA clone ha84b07 5', mRNA sequence.    34   3.7    2
AE003687|AE003687.3 Drosophila melanogaster chromosome 3R, section 25 of 118 of the complete sequence.    42   4.6    1
CC475314|CC475314.1 CH240_300J19.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_300J19, genomic survey sequence.    42   4.6    1
AC018294|AC018294.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    42   4.6    1
AC007770|AC007770.5 Drosophila melanogaster, chromosome 3R, region 86C-86C, BAC clone BACR03J13, complete sequence.    42   4.6    1
AC067951|AC067951.5 Homo sapiens chromosome 15 clone RP11-350A1, WORKING DRAFT SEQUENCE, 18 unordered pieces.    34   4.9    4
AC119266|AC119266.3 Mus musculus clone RP24-321G8, WORKING DRAFT SEQUENCE, 11 unordered pieces.    38   9.7    4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7YXD4) RecName: Full=Protein P80; AltName: Full=Endosomal memb...   244   5e-64
DQ646486_1(DQ646486|pid:none) Chlamydomonas reinhardtii transmem...    56   4e-07
CP000569_174(CP000569|pid:none) Actinobacillus pleuropneumoniae ...    32   8.9
(Q7ZXL5) RecName: Full=Protein kinase C-binding protein NELL2; A...    32   8.9
BX901933_2(BX901933|pid:none) Zebrafish DNA sequence from clone ...    32   8.9

 psg: 0.83  gvh: 0.49  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHP253 is cyt

>VHP253Z.Seq
NNNNNNNNNNAATGCAATTATTCGCTGGTATTAAAAGTATTTGCACAGAGATGGCAATGG
ATGGTTGTGAGAAATGTTCAGGAAATTCACCAACTACCACCTGTGATGTTTTGCCAGTTT
ACTCCTCCCTTTGTATGGCTATGCCTGATATGTCACAATGTGCCAATTGGACCAAGATGT
GTTCCTCCTCTGGTCAACTCTACAACTCTCAAATCACATCAGACTATTGTGTCGCCTCTG
TTGCTGACGCCGTTCCAATCATGAGAATGTACTTTCACACTGGTATCTTGGACTATATCC
TCTTTAAATCTTGGGTACCAAGAACTGACCGTCAATTTGCTGGTTCATGGTTTGC