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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP243
Library VH
(Link to library)
Clone ID VHP243
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16236-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHP243 (VHP243Q) /CSM/VH/VHP2-B/VHP243Q.Seq.d/
ACTGTTGGCCTACTGGTATTTNCAAAACAACAATTTGTACCAATACTACTATTATTTCTA
TTTGTAAAAATACTTTCTATCTTTTAATATAATTTTAAATATTATCAACAACCCAAAAAA
AAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
CWPTGIXKTTICTNTTIISICKNTFYLLI*f*ilsttqkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllvfxkqqfvpilllflfvkilsif*ynfkyyqqpkkk---


Frame B:
llaywyxqnnnlyqyyyyfyl*kyflsfniilniinnpkk---


Frame C:
CWPTGIXKTTICTNTTIISICKNTFYLLI*f*ilsttqkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP243 (VHP243Q) /CSM/VH/VHP2-B/VHP243Q.Seq.d/                        220   4e-57
VHD416 (VHD416Q) /CSM/VH/VHD4-A/VHD416Q.Seq.d/                        180   3e-45
SLE471 (SLE471Q) /CSM/SL/SLE4-C/SLE471Q.Seq.d/                        176   5e-44
SSH687 (SSH687Q) /CSM/SS/SSH6-D/SSH687Q.Seq.d/                        117   4e-26
VFM185 (VFM185Q) /CSM/VF/VFM1-D/VFM185Q.Seq.d/                         48   3e-05
AFH542 (AFH542Q) /CSM/AF/AFH5-B/AFH542Q.Seq.d/                         48   3e-05
AHP118 (AHP118Q) /CSM/AH/AHP1-A/AHP118Q.Seq.d/                         46   1e-04
VHP317 (VHP317Q) /CSM/VH/VHP3-A/VHP317Q.Seq.d/                         42   0.002
VHB390 (VHB390Q) /CSM/VH/VHB3-D/VHB390Q.Seq.d/                         42   0.002
VHB226 (VHB226Q) /CSM/VH/VHB2-B/VHB226Q.Seq.d/                         42   0.002
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ427105) Dictyostelium discoideum cDNA clone:ddv61e12, 5' ...   220   9e-54  1
(BJ438537) Dictyostelium discoideum cDNA clone:ddv37p04, 3' ...   180   7e-42  1
(BJ419789) Dictyostelium discoideum cDNA clone:ddv37p04, 5' ...   180   7e-42  1
(AU061502) Dictyostelium discoideum slug cDNA, clone SLE471.      176   1e-40  1
(AU035001) Dictyostelium discoideum slug cDNA, clone SLE471.      176   1e-40  1
(AU038419) Dictyostelium discoideum slug cDNA, clone SSH687.      115   4e-24  2
(BJ362924) Dictyostelium discoideum cDNA clone:ddc24i02, 5' ...    38   0.010  3
(BJ331935) Dictyostelium discoideum cDNA clone:dda37i14, 5' ...    42   0.026  2
(BJ416340) Dictyostelium discoideum cDNA clone:ddv25i21, 5' ...    48   0.071  1
(BJ326377) Dictyostelium discoideum cDNA clone:dda16c11, 5' ...    48   0.071  1
dna update 2008.12.15
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 100,354,829
protein update 2009. 7.20
PSORT 

 psg: 0.86  gvh: 0.27  alm: 0.46  top: 0.60  tms: 0.00  mit: 0.46  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 24.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for VHP243 is mit
5' end seq. ID VHP243F
5' end seq. 
>VHP243F.Seq
ACTGTTGGCCTACTGGTATTTNCAAAACAACAATTTGTACCAATACTACTATTATTTCTA
TTTGTAAAAATACTTTCTATCTTTTAATATAATTTTAAATATTATCAACAACCCAAAAAA
AAAANNNNNNNNNN
Length of 5' end seq. 134
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -