VHP230
Library VH
(Link to library)
Clone ID VHP230
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHP230P
(Link to Original site)
Representative DNA sequence
>VHP230 (VHP230Q) /CSM/VH/VHP2-B/VHP230Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGCACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAXXXXXXXXXXACGAATGGG
ATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCN
TCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTG
CTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTT
TCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCA
TCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAG
AACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTG
TACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTAT
TCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTT
CCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTG
TTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTT
TAGCCCCAGAAATCCCAGATCTTGTACTAATTACCACGAAAAACTATANNCAATNTAAGT
CG
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCAQTETVLRQAVAERIKPVLFVNKVDRFLL---

---EWDKNDAMNIWSFGPEGNGANLXVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDEN
MRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAI
GGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDH
WASIGVVNKDKKATEVALATRKRKGLAPEIPDLVLITTKNYXQXKS


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfahkpklyyvkpslnvsnqsysstksivsy---

---tngikmmp*tfglsvqkvtvpisssmspkvfni*mklkilslvlsngppkkvlfvmk
t*evsvsifmmspstlmpstevvvkssqllvvysmlln*lppqls*nqst**kllpqktl
lvvftlysivvevlllvknvvsvphyslskliyqy*npsvspliyvptlpvklshnvssi
iglqlvlstkirkplksl*pperekv*pqksqily*lprktixnxs

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsfli---

---rmg*k*chehlvfrsrr*rcqsxrqchqrcsife*n*rffrwcfpmghqrrccl**k
herypfqsl*chpph*chpqrwwsnhpncssctlcc*inclpnslrtnllsrnycprkry
wwyllctqss*rycyw*rtsyrfpiilcqssftsirilrfhr*ftfphcrssfptmclrs
lgfnwccqqr*esh*srfshqkekrfsprnprsctnyheklxxx*v

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCAQTETVLRQAVAERIKPVLFVNKVDRFLL---

---EWDKNDAMNIWSFGPEGNGANLXVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDEN
MRGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAI
GGIYSVLNRRRGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDH
WASIGVVNKDKKATEVALATRKRKGLAPEIPDLVLITTKNYXQXKS

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP230 (VHP230Q) /CSM/VH/VHP2-B/VHP230Q.Seq.d/ 2260 0.0
VHQ491 (VHQ491Q) /CSM/VH/VHQ4-D/VHQ491Q.Seq.d/ 1259 0.0
VHQ483 (VHQ483Q) /CSM/VH/VHQ4-D/VHQ483Q.Seq.d/ 1259 0.0
VHQ476 (VHQ476Q) /CSM/VH/VHQ4-D/VHQ476Q.Seq.d/ 1259 0.0
VHQ473 (VHQ473Q) /CSM/VH/VHQ4-D/VHQ473Q.Seq.d/ 1259 0.0
VHQ453 (VHQ453Q) /CSM/VH/VHQ4-C/VHQ453Q.Seq.d/ 1259 0.0
VHQ446 (VHQ446Q) /CSM/VH/VHQ4-B/VHQ446Q.Seq.d/ 1259 0.0
VHQ434 (VHQ434Q) /CSM/VH/VHQ4-B/VHQ434Q.Seq.d/ 1259 0.0
VHQ410 (VHQ410Q) /CSM/VH/VHQ4-A/VHQ410Q.Seq.d/ 1259 0.0
VHQ372 (VHQ372Q) /CSM/VH/VHQ3-C/VHQ372Q.Seq.d/ 1259 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446018) Dictyostelium discoideum cDNA clone:ddv61k08, 3' ... 1306 0.0 1
(AU039435) Dictyostelium discoideum slug cDNA, clone SLH782. 1249 0.0 2
(BJ446824) Dictyostelium discoideum cDNA clone:ddv63o22, 3' ... 1249 0.0 2
(BJ446813) Dictyostelium discoideum cDNA clone:ddv63m22, 3' ... 1249 0.0 2
(BJ446806) Dictyostelium discoideum cDNA clone:ddv63k22, 3' ... 1249 0.0 2
(BJ446805) Dictyostelium discoideum cDNA clone:ddv63k21, 3' ... 1249 0.0 2
(BJ446797) Dictyostelium discoideum cDNA clone:ddv63i24, 3' ... 1249 0.0 2
(BJ446787) Dictyostelium discoideum cDNA clone:ddv63h20, 3' ... 1249 0.0 2
(BJ446785) Dictyostelium discoideum cDNA clone:ddv63g24, 3' ... 1249 0.0 2
(BJ446779) Dictyostelium discoideum cDNA clone:ddv63f24, 3' ... 1249 0.0 2
dna update 2008.12.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 276 1e-72
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 276 1e-72
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 275 2e-72
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 275 2e-72
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 275 3e-72
BT072304_1(BT072304|pid:none) Salmo salar clone ssal-rgf-520-280... 274 5e-72
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 273 1e-71
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 270 6e-71
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 270 6e-71
AK298498_1(AK298498|pid:none) Homo sapiens cDNA FLJ56548 complet... 270 6e-71
protein update 2009. 7.20
PSORT

psg: 0.71 gvh: 0.38 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
44.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHP230 is cyt

5' end seq. ID VHP230F
5' end seq.
>VHP230F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGCACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTANNNNNNNNNN
Length of 5' end seq. 531
3' end seq. ID VHP230Z
3' end seq.
>VHP230Z.Seq
NNNNNNNNNNACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAA
GGTAACGGTGCCAATCTCNTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATT
AAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAA
AACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCAC
AGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACT
GCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCT
ATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGT
CGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGT
TTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGAT
CATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCC
ACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGTACTAATTACCACGAAA
AACTATANNCAATNTAAGTCG
Length of 3' end seq. 681
Connected seq. ID VHP230P
Connected seq.
>VHP230P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGCACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTA----------ACGAATGGG
ATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCN
TCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTG
CTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTT
TCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCA
TCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTCTCTTAG
AACCAATCTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTG
TACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTAT
TCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTT
CCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTG
TTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTT
TAGCCCCAGAAATCCCAGATCTTGTACTAATTACCACGAAAAACTATANNCAATNTAAGT
CG
Length of connected seq. 1192
Full length Seq ID -
Full length Seq. -
Length of full length seq. -