VHP227
Library VH
(Link to library)
Clone ID VHP227
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHP227P
(Link to Original site)
Representative DNA sequence
>VHP227 (VHP227Q) /CSM/VH/VHP2-B/VHP227Q.Seq.d/
GAGAAAGCCTCCGTAAAGCCAAAGTGTCTTCCACCGCCAAACGTGCCGCTGAAGTGACAA
CTGCCTCCGATGATGCTATTACTGTTCAAGTAAAATCAAAAAAGACTCTTCGTCCCACTG
AAGTTGATGATGAAATTTATTCAACTGAAAGCACTGATGTATCCGACGTCGAAGTCAGAG
AGAAAGTGCCAAAGAAATCAAAGACCAATTCGATTGAAGCTAAAACCATTGACGCTTTAA
AAAATGCTGCCACTGCTGTCATCTTCATGAATCTCTTTACCATCCACTGCTCCCAGAATG
GTGTTGAACCAACCTTGAAGACCATTATGGACAATGGTGCTGCATCAAATGAATTATTTC
AATTGCTTCAACCTACCCACAATGAATCAGTTAAGAACAACGATAAAATTGAAGGTGAAA
CATTAAAGAAGCTAATCCACCGTAACTTTAGATCCAAGACTTTGGTTCCATTCAAAACTG
ACTACGAAGCTGCCAACACTAAAGTAGTCGAAGCTATTAACCATCGTAACTGCTACTCAG
CCCXXXXXXXXXXACAAAACGAAAGCCAAGATTAACTTCCCGCTACTAGACGTCAAAGAA
GAGTTTGTTGAACAAATCAATATACAAGTTAACAATGAAATTCATAACTTCTTTATTATA
GAATTGGATATCATTGATGTACTTTTCGGTAATGATATCCTTAAGGACTCTATCATTAAC
CAAAAAGATAAAATAATCAAGTTGAATAACAGTACATACAAAATTAATTATCAACAGTCG
AATCAATTACATTGTAATGTAAAAGCTCCAAGAAAACATGTTACCGTATCCAATGATAAT
CAGTCACAGTCACATAATCTACTAGATGATGATGAAGATATCAAAGAACAAGTTACAAAG
TTTGTTGAAAGCATCCCATCACAACTTTGTGATATACTGGTTAAAACTAATCCAGAAGAA
GAAGAGATACAAGCAGTACGTGATTTCATTAATGATTCATTCGAAGATGTTATAGTAGAT
AAACTTCCTGATATTCCAGATCAGATTAACAATTCCAGAAGAGGTAATATCATACATAAT
ATCATAATAAAGAAAGATCAAGATGTTGAACCAACAAAGAAACAAATCTATTATTCAACA
GATGATCATAAGAGACATGTCGAAGAAATGGTTATCAAATTTATAGATTTAGGTATTATC
AAAAGATCAGAATCAAATTATTAAAT
sequence update 2002.10.25
Translated Amino Acid sequence
ESLRKAKVSSTAKRAAEVTTASDDAITVQVKSKKTLRPTEVDDEIYSTESTDVSDVEVRE
KVPKKSKTNSIEAKTIDALKNAATAVIFMNLFTIHCSQNGVEPTLKTIMDNGAASNELFQ
LLQPTHNESVKNNDKIEGETLKKLIHRNFRSKTLVPFKTDYEAANTKVVEAINHRNCYSA
---

---KTKAKINFPLLDVKEEFVEQINIQVNNEIHNFFIIELDIIDVLFGNDILKDSIINQK
DKIIKLNNSTYKINYQQSNQLHCNVKAPRKHVTVSNDNQSQSHNLLDDDEDIKEQVTKFV
ESIPSQLCDILVKTNPEEEEIQAVRDFINDSFEDVIVDKLPDIPDQINNSRRGNIIHNII
IKKDQDVEPTKKQIYYSTDDHKRHVEEMVIKFIDLGIIKRSESNY*


Translated Amino Acid sequence (All Frames)
Frame A:
ekasvkpkclpppnvplk*qlppmmlllfk*nqkrlfvplklmmkfiqlkalmyptskse
rkcqrnqrpirlklkpltl*kmlpllsss*islpstaprmvlnqp*rplwtmvlhqmnyf
ncfnlptmnqlrttiklkvkh*rs*stvtldprlwfhsklttklptlk*sklltivtatq
p---

---tkrkprltsry*tskksllnksiykltmkfitsll*nwislmyfsvmislrtlsltk
kik*ss*itvhtkliinsrinyivm*klqenmlpypmiishshiiy*mmmkisknklqsl
lkashhnfviywlkliqkkkrykqyvislmihskml**inflifqirltipeevisyiis
**rkikmlnqqrnksiiqqmiirdmskkwlsnl*i*vlskdqnqiik

Frame B:
rkpp*sqsvfhrqtcr*sdnclr*cyycsskikkdsssh*s***nlfn*kh*cirrrsqr
esakeikdqfd*s*nh*rfkkcchcchlheslyhpllpewc*tnledhygqwccik*iis
iastypq*is*eqr*n*r*nikeanpp*l*iqdfgsiqn*lrscqh*ssrsy*ps*llls
---

---qnesqd*lpatrrqrrvc*tnqyts*q*ns*llyyrigyh*ctfr**yp*glyh*pk
r*nnqve*qyiqn*lstvesitl*cksskktcyriq**svtvt*str***ryqrtsykvc
*khpittl*ytg*n*srrrrdtsst*fh**firrcysr*ts*ysrsd*qfqkr*yht*yh
nkersrc*tnketnllfnr*s*etcrrngyqiyrfryyqkiriklln

Frame C:
ESLRKAKVSSTAKRAAEVTTASDDAITVQVKSKKTLRPTEVDDEIYSTESTDVSDVEVRE
KVPKKSKTNSIEAKTIDALKNAATAVIFMNLFTIHCSQNGVEPTLKTIMDNGAASNELFQ
LLQPTHNESVKNNDKIEGETLKKLIHRNFRSKTLVPFKTDYEAANTKVVEAINHRNCYSA
---

---KTKAKINFPLLDVKEEFVEQINIQVNNEIHNFFIIELDIIDVLFGNDILKDSIINQK
DKIIKLNNSTYKINYQQSNQLHCNVKAPRKHVTVSNDNQSQSHNLLDDDEDIKEQVTKFV
ESIPSQLCDILVKTNPEEEEIQAVRDFINDSFEDVIVDKLPDIPDQINNSRRGNIIHNII
IKKDQDVEPTKKQIYYSTDDHKRHVEEMVIKFIDLGIIKRSESNY*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP227 (VHP227Q) /CSM/VH/VHP2-B/VHP227Q.Seq.d/ 2371 0.0
AHH192 (AHH192Q) /CSM/AH/AHH1-D/AHH192Q.Seq.d/ 1334 0.0
SHK447 (SHK447Q) /CSM/SH/SHK4-B/SHK447Q.Seq.d/ 1320 0.0
SHL478 (SHL478Q) /CSM/SH/SHL4-D/SHL478Q.Seq.d/ 1308 0.0
VHG643 (VHG643Q) /CSM/VH/VHG6-B/VHG643Q.Seq.d/ 1304 0.0
SHE406 (SHE406Q) /CSM/SH/SHE4-A/SHE406Q.Seq.d/ 1273 0.0
AHI310 (AHI310Q) /CSM/AH/AHI3-A/AHI310Q.Seq.d/ 1249 0.0
AHK704 (AHK704Q) /CSM/AH/AHK7-A/AHK704Q.Seq.d/ 1181 0.0
AHN739 (AHN739Q) /CSM/AH/AHN7-B/AHN739Q.Seq.d/ 1150 0.0
AHK801 (AHK801Q) /CSM/AH/AHK8-A/AHK801Q.Seq.d/ 1122 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ445989) Dictyostelium discoideum cDNA clone:ddv61e08, 3' ... 1334 0.0 1
(BJ409201) Dictyostelium discoideum cDNA clone:dds39m19, 3' ... 1334 0.0 1
(BJ352155) Dictyostelium discoideum cDNA clone:dda45g23, 3' ... 1334 0.0 1
(BJ408772) Dictyostelium discoideum cDNA clone:dds46l20, 3' ... 1308 0.0 1
(BJ440638) Dictyostelium discoideum cDNA clone:ddv44e12, 3' ... 1279 0.0 2
(BJ408022) Dictyostelium discoideum cDNA clone:dds44n12, 3' ... 1253 0.0 2
(BJ405570) Dictyostelium discoideum cDNA clone:dds32l02, 3' ... 1211 0.0 3
(BJ335927) Dictyostelium discoideum cDNA clone:dda52h01, 5' ... 1181 0.0 1
(BJ352521) Dictyostelium discoideum cDNA clone:dda47d03, 3' ... 1162 0.0 4
(BJ337707) Dictyostelium discoideum cDNA clone:dda58n09, 5' ... 1150 0.0 1
dna update 2008.12.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF017040_1(AF017040|pid:none) Dictyostelium discoideum LTR-retro... 347 7e-94
AF049230_3(AF049230|pid:none) Dictyostelium discoideum LTR-retro... 261 3e-68
AF017040_2(AF017040|pid:none) Dictyostelium discoideum LTR-retro... 186 2e-45
AE014185_316(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 42 0.045
AF031904_2(AF031904|pid:none) Plasmodium berghei nucleosome asse... 42 0.058
CP001357_1378(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 41 0.076
FN357821_5(FN357821|pid:none) Schistosoma mansoni genome sequenc... 40 0.13
CR382131_591(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 40 0.13
AJ746250_2(AJ746250|pid:none) Yarrowia lipolytica retrotransposo... 40 0.13
AM422018_68(AM422018|pid:none) Candidatus Phytoplasma australien... 40 0.22
protein update 2009. 7.20
PSORT

psg: 0.62 gvh: 0.34 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.04
nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for VHP227 is cyt

5' end seq. ID VHP227F
5' end seq.
>VHP227F.Seq
GAGAAAGCCTCCGTAAAGCCAAAGTGTCTTCCACCGCCAAACGTGCCGCTGAAGTGACAA
CTGCCTCCGATGATGCTATTACTGTTCAAGTAAAATCAAAAAAGACTCTTCGTCCCACTG
AAGTTGATGATGAAATTTATTCAACTGAAAGCACTGATGTATCCGACGTCGAAGTCAGAG
AGAAAGTGCCAAAGAAATCAAAGACCAATTCGATTGAAGCTAAAACCATTGACGCTTTAA
AAAATGCTGCCACTGCTGTCATCTTCATGAATCTCTTTACCATCCACTGCTCCCAGAATG
GTGTTGAACCAACCTTGAAGACCATTATGGACAATGGTGCTGCATCAAATGAATTATTTC
AATTGCTTCAACCTACCCACAATGAATCAGTTAAGAACAACGATAAAATTGAAGGTGAAA
CATTAAAGAAGCTAATCCACCGTAACTTTAGATCCAAGACTTTGGTTCCATTCAAAACTG
ACTACGAAGCTGCCAACACTAAAGTAGTCGAAGCTATTAACCATCGTAACTGCTACTCAG
CCCNNNNNNNNNN
Length of 5' end seq. 553
3' end seq. ID VHP227Z
3' end seq.
>VHP227Z.Seq
NNNNNNNNNNACAAAACGAAAGCCAAGATTAACTTCCCGCTACTAGACGTCAAAGAAGAG
TTTGTTGAACAAATCAATATACAAGTTAACAATGAAATTCATAACTTCTTTATTATAGAA
TTGGATATCATTGATGTACTTTTCGGTAATGATATCCTTAAGGACTCTATCATTAACCAA
AAAGATAAAATAATCAAGTTGAATAACAGTACATACAAAATTAATTATCAACAGTCGAAT
CAATTACATTGTAATGTAAAAGCTCCAAGAAAACATGTTACCGTATCCAATGATAATCAG
TCACAGTCACATAATCTACTAGATGATGATGAAGATATCAAAGAACAAGTTACAAAGTTT
GTTGAAAGCATCCCATCACAACTTTGTGATATACTGGTTAAAACTAATCCAGAAGAAGAA
GAGATACAAGCAGTACGTGATTTCATTAATGATTCATTCGAAGATGTTATAGTAGATAAA
CTTCCTGATATTCCAGATCAGATTAACAATTCCAGAAGAGGTAATATCATACATAATATC
ATAATAAAGAAAGATCAAGATGTTGAACCAACAAAGAAACAAATCTATTATTCAACAGAT
GATCATAAGAGACATGTCGAAGAAATGGTTATCAAATTTATAGATTTAGGTATTATCAAA
AGATCAGAATCAAATTATTAAAT
Length of 3' end seq. 683
Connected seq. ID VHP227P
Connected seq.
>VHP227P.Seq
GAGAAAGCCTCCGTAAAGCCAAAGTGTCTTCCACCGCCAAACGTGCCGCTGAAGTGACAA
CTGCCTCCGATGATGCTATTACTGTTCAAGTAAAATCAAAAAAGACTCTTCGTCCCACTG
AAGTTGATGATGAAATTTATTCAACTGAAAGCACTGATGTATCCGACGTCGAAGTCAGAG
AGAAAGTGCCAAAGAAATCAAAGACCAATTCGATTGAAGCTAAAACCATTGACGCTTTAA
AAAATGCTGCCACTGCTGTCATCTTCATGAATCTCTTTACCATCCACTGCTCCCAGAATG
GTGTTGAACCAACCTTGAAGACCATTATGGACAATGGTGCTGCATCAAATGAATTATTTC
AATTGCTTCAACCTACCCACAATGAATCAGTTAAGAACAACGATAAAATTGAAGGTGAAA
CATTAAAGAAGCTAATCCACCGTAACTTTAGATCCAAGACTTTGGTTCCATTCAAAACTG
ACTACGAAGCTGCCAACACTAAAGTAGTCGAAGCTATTAACCATCGTAACTGCTACTCAG
CCC----------ACAAAACGAAAGCCAAGATTAACTTCCCGCTACTAGACGTCAAAGAA
GAGTTTGTTGAACAAATCAATATACAAGTTAACAATGAAATTCATAACTTCTTTATTATA
GAATTGGATATCATTGATGTACTTTTCGGTAATGATATCCTTAAGGACTCTATCATTAAC
CAAAAAGATAAAATAATCAAGTTGAATAACAGTACATACAAAATTAATTATCAACAGTCG
AATCAATTACATTGTAATGTAAAAGCTCCAAGAAAACATGTTACCGTATCCAATGATAAT
CAGTCACAGTCACATAATCTACTAGATGATGATGAAGATATCAAAGAACAAGTTACAAAG
TTTGTTGAAAGCATCCCATCACAACTTTGTGATATACTGGTTAAAACTAATCCAGAAGAA
GAAGAGATACAAGCAGTACGTGATTTCATTAATGATTCATTCGAAGATGTTATAGTAGAT
AAACTTCCTGATATTCCAGATCAGATTAACAATTCCAGAAGAGGTAATATCATACATAAT
ATCATAATAAAGAAAGATCAAGATGTTGAACCAACAAAGAAACAAATCTATTATTCAACA
GATGATCATAAGAGACATGTCGAAGAAATGGTTATCAAATTTATAGATTTAGGTATTATC
AAAAGATCAGAATCAAATTATTAAAT
Length of connected seq. 1216
Full length Seq ID -
Full length Seq. -
Length of full length seq. -