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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHP215
Library VH
(Link to library)
Clone ID VHP215
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16379-1
Original site URL
Representative seq. ID VHP215P
(Link to Original site)
Representative DNA sequence 
>VHP215 (VHP215Q) /CSM/VH/VHP2-A/VHP215Q.Seq.d/
ATTATTTTTATAATTTCACTTGTTTATTTTAATATTTATACATATAAATAATAATATAGT
TGAAAAAATGTGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGA
TAATATCGTACCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATT
CAGCGGCAAAGTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCA
TTCAATTGACATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTAC
CTACTATGAACCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGA
AAATACGATTCTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTA
TCGTTCAAAATATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGC
CACTGATGCTCGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAA
TATTAAAATCACTATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGT
AATTGAAAATAATGATGGTACTAAAACCTTTATTTTTGAACAAACTCCXXXXXXXXXXCT
TTTGAAACCACTTTCAAAACGTTTAGGGTTTCGAGCCAACCAAAGGTGAACCATCTTCAG
ATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGTATGTTGGGTGATGCTGATATCG
TTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTTCAAGTTTACCATCAG
ATATTCGTTNTACAGTACTTGCTACAATCGTAAAGAATGGTGGTGAAGCTGATCAACAAA
TCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGAATTCTTACCTTTTGG
TACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCAATTTCGCTTTATCTC
CATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCCCAAATCGTGTTCGTC
AATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCCAATCAACGAAACATTTAAAAACT
CTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAATGGATGATTCTCAAT
ACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTGCTGATCGTTCAATTA
AACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAGCTTTTAATCAAGATT
TATCAAATTGGATTCAATCAAAATAAAAATAAAATCTCTTACAATGAAAGATCTTTGTTT
TAATAATTGATAGNATAAAAAAAAANAGACGAAAACTAAAATAAACATCAAATTA
sequence update 2002.10.25
Translated Amino Acid sequence 
lfl*FHLFILIFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKDFVF
SGKVDITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELPVTE
NTILSIDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKSFFN
IKITISSHLTALSNMDTTSVIENNDGTKTFIFEQT---

---FETTFKTFRVSSQPKVNHLQIPC*eik*tlnwvcwvmlisllnvrkdsklskqtlqv
yhqifvxqyllqs*rmvvklinksslinilnll*slkriltfwyllwlqkrnwlkkpsis
lylhplevkiviwfslpsqivfvnslgltspktliqstkhlktllclvvslvvvsplkwm
ilntmksstfskiiqfqllivqlnki*kwlqliqigskllikiyqigfnqnknkisyner
slf**lix*kkxden*nkhqi
Translated Amino Acid sequence (All Frames) 
Frame A:
iifiislvyfniytyk**ys*knv*s*tfs*qsr*isitr*yrtk*irfts*tkfkgfci
qrqs*hynqyc*tnqknhypfn*h*nsiskdlkstsyfryll*trrscnfripr*itsyr
kydslh*fhwyfk*qikrflsfkiccqw*rslywyhsirsh*csscfpmf**tcfkifl*
y*nhyfisfncsfkygynfcn*k**wy*nlyf*tns---

---llkplskrlgfranqr*tifrylvkr*skh*igyvg*c*yrc*m*ekirsfqsrlfk
ftirysxystcynrkeww*s*stnhh*sis*iffsr*keflpfgtcfgskrgig*kspqf
rfisir*ksr*lygflyppkscssirlglphqkl*snqrni*klsfvwsyhw*lshl*ng
*fsiq*srqlfqrssssnc*sfn*trfrngyn*fklvqsf*srfikldsikikiksltmk
dlcfnn**xkkkxtktkinikl

Frame B:
lfl*FHLFILIFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLHLRPNLKDFVF
SGKVDITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAILEFQDELPVTE
NTILSIDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCFDEPALKSFFN
IKITISSHLTALSNMDTTSVIENNDGTKTFIFEQT---

---f*nhfqnv*gfeptkgepssdtllrdkvntklgmlgdadivaeckkrfeafkadsss
lpsdirxtvlativknggeadqqiiidqylksslvaeknsyllvlalapkeelvekalnf
alspsvrsqdsymvfftlpnrvrqfawayltknfnpinetfknsplfgriigscltskmd
dsqynevvnffkdhpvpiadrsikqdlemvtinsnwfkafnqdlsnwiqsk*k*nllq*k
ifvliidxikkxrrklk*tsn

Frame C:
yfynftclf*ylyi*iii*lkkcviini*ltk*id*yyqiisyqvntiyildqi*rilys
aakltlqsillnqpkkslsiqltlkfnq*rs*inkllplptmnqkklqf*nskmnyqlqk
irfsplislvf*mtn*kvsivqnmlsmvkivilvplnskplmlvvlshvlmnll*nlsli
lkslfhli*llfqiwiqll*lkimmvlkplflnkl---

---FETTFKTFRVSSQPKVNHLQIPC*eik*tlnwvcwvmlisllnvrkdsklskqtlqv
yhqifvxqyllqs*rmvvklinksslinilnll*slkriltfwyllwlqkrnwlkkpsis
lylhplevkiviwfslpsqivfvnslgltspktliqstkhlktllclvvslvvvsplkwm
ilntmksstfskiiqfqllivqlnki*kwlqliqigskllikiyqigfnqnknkisyner
slf**lix*kkxden*nkhqi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP215 (VHP215Q) /CSM/VH/VHP2-A/VHP215Q.Seq.d/                       2557   0.0
AHO229 (AHO229Q) /CSM/AH/AHO2-B/AHO229Q.Seq.d/                       1461   0.0
AHC268 (AHC268Q) /CSM/AH/AHC2-C/AHC268Q.Seq.d/                       1461   0.0
AHB617 (AHB617Q) /CSM/AH/AHB6-A/AHB617Q.Seq.d/                       1455   0.0
AHK643 (AHK643Q) /CSM/AH/AHK6-B/AHK643Q.Seq.d/                       1453   0.0
VHK646 (VHK646Q) /CSM/VH/VHK6-B/VHK646Q.Seq.d/                       1445   0.0
VHB306 (VHB306Q) /CSM/VH/VHB3-A/VHB306Q.Seq.d/                       1443   0.0
AHM269 (AHM269Q) /CSM/AH/AHM2-C/AHM269Q.Seq.d/                       1443   0.0
VHB463 (VHB463Q) /CSM/VH/VHB4-C/VHB463Q.Seq.d/                       1439   0.0
AHD138 (AHD138Q) /CSM/AH/AHD1-B/AHD138Q.Seq.d/                       1439   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ445953) Dictyostelium discoideum cDNA clone:ddv61m04, 3' ...  1451   0.0    2
(BJ356132) Dictyostelium discoideum cDNA clone:dda59i08, 3' ...  1443   0.0    2
(BJ349159) Dictyostelium discoideum cDNA clone:dda35g18, 3' ...  1443   0.0    2
(BJ348678) Dictyostelium discoideum cDNA clone:dda34a06, 3' ...  1437   0.0    2
(BJ354034) Dictyostelium discoideum cDNA clone:dda52e12, 3' ...  1435   0.0    2
(BJ357826) Dictyostelium discoideum cDNA clone:dda64g23, 3' ...  1425   0.0    2
(BJ405399) Dictyostelium discoideum cDNA clone:dds31e18, 3' ...  1417   0.0    2
(BJ436855) Dictyostelium discoideum cDNA clone:ddv32o08, 3' ...  1407   0.0    1
(BJ446012) Dictyostelium discoideum cDNA clone:ddv61i10, 3' ...  1388   0.0    3
(BJ442621) Dictyostelium discoideum cDNA clone:ddv50p09, 3' ...  1388   0.0    3
dna update 2008.12.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY631393_1(AY631393|pid:none) Dictyostelium discoideum puromycin...   230   1e-59
AF327435_1(AF327435|pid:none) Drosophila melanogaster puromycin-...   155   5e-36
AE014296_282(AE014296|pid:none) Drosophila melanogaster chromoso...   154   6e-36
AE014296_281(AE014296|pid:none) Drosophila melanogaster chromoso...   154   6e-36
AM270075_67(AM270075|pid:none) Aspergillus niger contig An04c014...   137   7e-31
AP007157_574(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...   135   5e-30
EF678434_1(EF678434|pid:none) Picea sitchensis clone WS02921_A14...   132   2e-29
EF676179_1(EF676179|pid:none) Picea sitchensis clone WS02717_G19...   132   4e-29
AF350242_1(AF350242|pid:none) Pichia angusta aminopeptidase gene...   130   9e-29
(P32454) RecName: Full=Aminopeptidase 2, mitochondrial;         ...   129   3e-28
protein update 2009. 7.20
PSORT 

 psg: 0.96  gvh: 0.35  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 16.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHP215 is cyt
5' end seq. ID VHP215F
5' end seq. 
>VHP215F.Seq
ATTATTTTTATAATTTCACTTGTTTATTTTAATATTTATACATATAAATAATAATATAGT
TGAAAAAATGTGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGA
TAATATCGTACCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATT
CAGCGGCAAAGTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCA
TTCAATTGACATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTAC
CTACTATGAACCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGA
AAATACGATTCTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTA
TCGTTCAAAATATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGC
CACTGATGCTCGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAA
TATTAAAATCACTATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGT
AATTGAAAATAATGATGGTACTAAAACCTTTATTTTTGAACAAACTCCNNNNNNNNNN
Length of 5' end seq. 658
3' end seq. ID VHP215Z
3' end seq. 
>VHP215Z.Seq
NNNNNNNNNNCTTTTGAAACCACTTTCAAAACGTTTAGGGTTTCGAGCCAACCAAAGGTG
AACCATCTTCAGATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGTATGTTGGGTG
ATGCTGATATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTTCAA
GTTTACCATCAGATATTCGTTNTACAGTACTTGCTACAATCGTAAAGAATGGTGGTGAAG
CTGATCAACAAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGAATT
CTTACCTTTTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCAATT
TCGCTTTATCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCCCAA
ATCGTGTTCGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCCAATCAACGAAA
CATTTAAAAACTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAATGG
ATGATTCTCAATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTGCTG
ATCGTTCAATTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAGCTT
TTAATCAAGATTTATCAAATTGGATTCAATCAAAATAAAAATAAAATCTCTTACAATGAA
AGATCTTTGTTTTAATAATTGATAGNATAAAAAAAAANAGACGAAAACTAAAATAAACAT
CAAATTA
Length of 3' end seq. 787
Connected seq. ID VHP215P
Connected seq. 
>VHP215P.Seq
ATTATTTTTATAATTTCACTTGTTTATTTTAATATTTATACATATAAATAATAATATAGT
TGAAAAAATGTGTGATCATAAACATTTAGTTGACAAAGTAGATAGATTAGTATTACCAGA
TAATATCGTACCAAGTAAATACGATTTACATCTTAGACCAAATTTAAAGGATTTTGTATT
CAGCGGCAAAGTTGACATTACAATCAATATTGTTAAACCAACCAAAAAAATCATTATCCA
TTCAATTGACATTGAAATTCAATCAGTAAAGATCTTAAATCAACAAGCTACTTCCGTTAC
CTACTATGAACCAGAAGAAGTTGCAATTTTAGAATTCCAAGATGAATTACCAGTTACAGA
AAATACGATTCTCTCCATTGATTTCACTGGTATTTTAAATGACAAATTAAAAGGTTTCTA
TCGTTCAAAATATGTTGTCAATGGTGAAGATCGTTATATTGGTACCACTCAATTCGAAGC
CACTGATGCTCGTCGTGCTTTCCCATGTTTTGATGAACCTGCTTTAAAATCTTTCTTTAA
TATTAAAATCACTATTTCATCTCATTTAACTGCTCTTTCAAATATGGATACAACTTCTGT
AATTGAAAATAATGATGGTACTAAAACCTTTATTTTTGAACAAACTCC----------CT
TTTGAAACCACTTTCAAAACGTTTAGGGTTTCGAGCCAACCAAAGGTGAACCATCTTCAG
ATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGTATGTTGGGTGATGCTGATATCG
TTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTTCAAGTTTACCATCAG
ATATTCGTTNTACAGTACTTGCTACAATCGTAAAGAATGGTGGTGAAGCTGATCAACAAA
TCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGAATTCTTACCTTTTGG
TACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCAATTTCGCTTTATCTC
CATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCCCAAATCGTGTTCGTC
AATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCCAATCAACGAAACATTTAAAAACT
CTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAATGGATGATTCTCAAT
ACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTGCTGATCGTTCAATTA
AACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAGCTTTTAATCAAGATT
TATCAAATTGGATTCAATCAAAATAAAAATAAAATCTCTTACAATGAAAGATCTTTGTTT
TAATAATTGATAGNATAAAAAAAAANAGACGAAAACTAAAATAAACATCAAATTA
Length of connected seq. 1425
Full length Seq ID -
Full length Seq. -
Length of full length seq. -