VHP196
Library VH
(Link to library)
Clone ID VHP196
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHP196P
(Link to Original site)
Representative DNA sequence
>VHP196 (VHP196Q) /CSM/VH/VHP1-D/VHP196Q.Seq.d/
TTAACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAAT
TCGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGA
TCACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAA
AGTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCAC
CATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGC
TGGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTT
CAGTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTG
CGTCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTAT
CAAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACAC
TGAAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAA
CACTGAAGAXXXXXXXXXXCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAA
AGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCAC
CAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGT
CACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCG
TGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTNTNTTAGAACCAATNTACTTAGT
AGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAG
AGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCA
TTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCA
AGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAA
GAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCC
AGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAA
AAATAGGAATCAAATCTAAAAAAAATTTTAAAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
*LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADK
VSGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDF
SSEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNT
EEAYLSFRRAIESVNVIVGNTE---

---PEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNLYDVTLH
TDAIHRGGGQIIPTARRVLYAAELTASPTXLEPXYLVEITAPENAIGGIYSVLNRRRGIV
IGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHWASIGVVNKDKKAT
EVALATRKRKGLAPEIPDLDKFHEKL*ti*val*vfknrnqi*kkf*kk


Translated Amino Acid sequence (All Frames)
Frame A:
ltleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*
sfw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*f
qfrsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh
*rslslfp*sy*irqchcw*h*r---

---PEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNLYDVTLH
TDAIHRGGGQIIPTARRVLYAAELTASPTXLEPXYLVEITAPENAIGGIYSVLNRRRGIV
IGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHWASIGVVNKDKKAT
EVALATRKRKGLAPEIPDLDKFHEKL*ti*val*vfknrnqi*kkf*kk

Frame B:
*LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADK
VSGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDF
SSEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNT
EEAYLSFRRAIESVNVIVGNTE---

---qkvtvpisssmspkvfni*mklkilslvlsngppkkvlfvmkt*evsvsifmmspst
lmpstevvvkssqllvvysmlln*lppqlx*nqxt**kllpqktllvvftlysivvevll
lvknvvsvphyslskliyqy*npsvspliyvptlpvklshnvssiiglqlvlstkirkpl
ksl*pperekv*pqksqiltnstknskqfkshfefskigikskknfkkk

Frame C:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklislsvellnpsmsllvtlk---

---rr*rcqsprqchqrcsife*n*rffrwcfpmghqrrccl**kherypfqsl*chpph
*chpqrwwsnhpncssctlcc*inclpnxxrtnxlsrnycprkrywwyllctqss*rycy
w*rtsyrfpiilcqssftsirilrfhr*ftfphcrssfptmclrslgfnwccqqr*esh*
srfshqkekrfsprnprs*qiprktlnnlsrtlsfqk*esnlkkilkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP196 (VHP196Q) /CSM/VH/VHP1-D/VHP196Q.Seq.d/ 2413 0.0
VHA230 (VHA230Q) /CSM/VH/VHA2-B/VHA230Q.Seq.d/ 1287 0.0
VHP776 (VHP776Q) /CSM/VH/VHP7-D/VHP776Q.Seq.d/ 1281 0.0
VHP166 (VHP166Q) /CSM/VH/VHP1-C/VHP166Q.Seq.d/ 1281 0.0
VHE364 (VHE364Q) /CSM/VH/VHE3-C/VHE364Q.Seq.d/ 1281 0.0
VHA267 (VHA267Q) /CSM/VH/VHA2-C/VHA267Q.Seq.d/ 1281 0.0
VHP832 (VHP832Q) /CSM/VH/VHP8-B/VHP832Q.Seq.d/ 1279 0.0
VHP746 (VHP746Q) /CSM/VH/VHP7-B/VHP746Q.Seq.d/ 1279 0.0
VHP542 (VHP542Q) /CSM/VH/VHP5-B/VHP542Q.Seq.d/ 1279 0.0
VHJ652 (VHJ652Q) /CSM/VH/VHJ6-C/VHJ652Q.Seq.d/ 1279 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ446191) Dictyostelium discoideum cDNA clone:ddv61o23, 3' ... 1287 0.0 1
(BJ436506) Dictyostelium discoideum cDNA clone:ddv31k08, 3' ... 1287 0.0 1
(BJ446473) Dictyostelium discoideum cDNA clone:ddv62h19, 3' ... 1281 0.0 1
(BJ446062) Dictyostelium discoideum cDNA clone:ddv61c17, 3' ... 1281 0.0 1
(BJ439195) Dictyostelium discoideum cDNA clone:ddv39p15, 3' ... 1281 0.0 1
(BJ437205) Dictyostelium discoideum cDNA clone:ddv33d16, 3' ... 1281 0.0 1
(BJ436566) Dictyostelium discoideum cDNA clone:ddv31e18, 3' ... 1281 0.0 1
(BJ446358) Dictyostelium discoideum cDNA clone:ddv62p08, 3' ... 1279 0.0 1
(BJ446338) Dictyostelium discoideum cDNA clone:ddv62l11, 3' ... 1279 0.0 1
(BJ446289) Dictyostelium discoideum cDNA clone:ddv62c11, 3' ... 1279 0.0 1
dna update 2008.12.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 263 8e-69
AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016... 263 8e-69
DQ848932_1(DQ848932|pid:none) Scophthalmus maximus clone kbc101 ... 262 2e-68
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 261 5e-68
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 259 1e-67
A40411(A40411) translation elongation factor eEF-2 - Caenorhabdi... 259 1e-67
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 259 1e-67
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 259 1e-67
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 258 3e-67
AF248644_1(AF248644|pid:none) Filobasidiella neoformans var. neo... 258 3e-67
protein update 2009. 7.20
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHP196 is cyt

5' end seq. ID VHP196F
5' end seq.
>VHP196F.Seq
TTAACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAAT
TCGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGA
TCACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAA
AGTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCAC
CATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGC
TGGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTT
CAGTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTG
CGTCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTAT
CAAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACAC
TGAAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAA
CACTGAAGANNNNNNNNNN
Length of 5' end seq. 619
3' end seq. ID VHP196Z
3' end seq.
>VHP196Z.Seq
NNNNNNNNNNCCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCA
ATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGG
TGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCA
CACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTA
TGCTGCTGAATTAACTGCCTCCCCAACTNTNTTAGAACCAATNTACTTAGTAGAAATTAC
TGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGT
TATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGT
ATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCC
ACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCAC
TGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGA
CAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAAAAATAGGAA
TCAAATCTAAAAAAAATTTTAAAAAAAAAA
Length of 3' end seq. 690
Connected seq. ID VHP196P
Connected seq.
>VHP196P.Seq
TTAACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAAT
TCGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGA
TCACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAA
AGTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCAC
CATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGC
TGGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTT
CAGTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTG
CGTCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTAT
CAAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACAC
TGAAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAA
CACTGAAGA----------CCAGAAGGTAACGGTGCCAATCTCCTCGTCAATGTCACCAA
AGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCAC
CAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGT
CACCCTCCACACTGATGCCATCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCG
TGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTNTNTTAGAACCAATNTACTTAGT
AGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAG
AGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCA
TTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCA
AGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAA
GAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCC
AGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAA
AAATAGGAATCAAATCTAAAAAAAATTTTAAAAAAAAAA
Length of connected seq. 1289
Full length Seq ID -
Full length Seq. -
Length of full length seq. -